Rh1DG460400

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0017696
Physical Location & Seq
Reverse (-)
66438649 .. 66439608
960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG460400.1

Sequence Viewer

Length: 960 bp
ATGGCTGACAAAGCTAGGATCAGCGAGCTACCTGACGATATCAGCTTAAAGATCCTCTCCTTGCTACCAGGCAAAGATGCGGTAGCAACAGCAATTCTATCACATAAATGGAAAGACCTATATAAACCGCAAGGTGAAGTGAGGTTTGAATTCAACTCAACGCATGAGGACAGAGAAACTCTATACAACTCTATCAAGGAGGAGTTGCTTATTACAGGTGTACCACCCCTACTTAGGTTTGTCTTACAATGCAACTTGTACAAGGAGCGTCGCCCAATTGAGCATATGCTCCATGCAGCAACTAAAAATCGCCTTGTGGTGGAGATGGAAGTGTGTGTCAAACCAGACAAAGAGAAAGGTGTGTTCCCACTACCTGAATTTGTGCTTACAAGCCAACATCTGAAGTACTTAAGATTGTGTGGGGTGAGCGTGAGAGTTCCAGATGGGACACCTGTTCTCCAATCTTTGAAGAGGTTACAAGTCGATAAATCATTAAAGAGTGACATTTCCCTCCAGTACCTCTATGCCAAATGTCCTGTTCTTCAGGAGCTCACAATGGAAGGAAATATCGATGACCTACCTCGTGAGTCTGACAAGCGTGTGTTTGATGTATATTCCCCTAGTCTGAAAACTTTGCAGATAAAACTCGAGACAGATTTTGAGTTTGGTCTCACAGGTCATCATGCACCAGACCCCATATACTCATTCTGCATATATGCACCAAAGCTGGAGAATCTCTTGATAGAAGAGAACATGTTAGCTTGCTACAGAGTCCACAACTTGGAAACTACAGTTGAAGCCAGGCTTCAGATTGGATGGCGAGCTGTGGGCTATGAATTCACAGATCCTAAGTCTCTAAATGATGCTTTCAGCCTTTTGAGAGGCCTAACCAATGTGCAGTCTCTGACCCTTTACGACCATACTACAGCGGTAAGACCATTGAGTCTTTCTTTTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

319

Amino Acids

36.47

Weight (kDa)

6.17

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 7 - 40 3.3e-06 F-box domain
LRR_At5g56370 PF24758 106 - 254 1.4e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 942
AccB7I CCANNNNNTGG 1 cut(s) 781
AciI CCGC 3 cut(s) 80, 128, 929
AclWI GGATC 3 cut(s) 26, 46, 839
AcsI RAATTY 3 cut(s) 149, 377, 836
AcuI CTGAAG 3 cut(s) 422, 527, 791
AfaI GTAC 4 cut(s) 222, 260, 407, 518
AfiI CCNNNNNNNGG 3 cut(s) 234, 319, 781
AflII CTTAAG 1 cut(s) 409
AflIII ACRYGT 1 cut(s) 753
AgsI TTSAA 4 cut(s) 149, 154, 469, 797
AjnI CCWGG 2 cut(s) 67, 800
AluBI AGCT 7 cut(s) 14, 28, 45, 550, 727, 761, 824
AluI AGCT 7 cut(s) 14, 28, 45, 550, 727, 761, 824
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 4 cut(s) 644, 674, 858, 906
AlwI GGATC 3 cut(s) 26, 46, 839
AlwNI CAGNNNCTG 1 cut(s) 904
Ama87I CYCGRG 1 cut(s) 647
AoxI GGCC 1 cut(s) 883
ApeKI GCWGC 1 cut(s) 296
ApoI RAATTY 3 cut(s) 149, 377, 836
AsuHPI GGTGA 2 cut(s) 146, 436
AvaI CYCGRG 1 cut(s) 647
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BanII GRGCYC 1 cut(s) 552
BauI CACGAG 1 cut(s) 582
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 1 cut(s) 308
BccI CCATC 3 cut(s) 319, 437, 810
BciT130I CCWGG 2 cut(s) 69, 802
BcoDI GTCTC 4 cut(s) 644, 674, 858, 906
BfaI CTAG 2 cut(s) 15, 621
BfmI CTRYAG 3 cut(s) 766, 789, 924
BfrI CTTAAG 1 cut(s) 409
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
BmcAI AGTACT 1 cut(s) 407
Bme1390I CCNGG 2 cut(s) 69, 802
BmeT110I CYCGRG 1 cut(s) 647
BmrFI CCNGG 2 cut(s) 69, 802
BmsI GCATC 2 cut(s) 67, 853
BpmI CTGGAG 2 cut(s) 497, 749
Bsa29I ATCGAT 1 cut(s) 570
BsaI GGTCTC 1 cut(s) 674
BsaXI ACNNNNNCTCC 2 cut(s) 441, 471
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 319, 781
Bse1I ACTGG 1 cut(s) 514
BseBI CCWGG 2 cut(s) 69, 802
BseCI ATCGAT 1 cut(s) 570
BseGI GGATG 1 cut(s) 821
BseLI CCNNNNNNNGG 3 cut(s) 234, 319, 781
BseNI ACTGG 1 cut(s) 514
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 308
BsgI GTGCAG 1 cut(s) 917
BshFI GGCC 1 cut(s) 885
BshVI ATCGAT 1 cut(s) 570
BsiHKAI GWGCWC 1 cut(s) 552
BsiHKCI CYCGRG 1 cut(s) 647
BslFI GGGAC 1 cut(s) 460
BslI CCNNNNNNNGG 3 cut(s) 234, 319, 781
BsmAI GTCTC 4 cut(s) 644, 674, 858, 906
BsmFI GGGAC 1 cut(s) 460
BsnI GGCC 1 cut(s) 885
Bso31I GGTCTC 1 cut(s) 674
BsoBI CYCGRG 1 cut(s) 647
Bsp1286I GDGCHC 1 cut(s) 552
Bsp1407I TGTACA 1 cut(s) 258
Bsp143I GATC 3 cut(s) 18, 51, 844
BspACI CCGC 3 cut(s) 80, 128, 929
BspANI GGCC 1 cut(s) 885
BspDI ATCGAT 1 cut(s) 570
BspPI GGATC 3 cut(s) 26, 46, 839
BspTI CTTAAG 1 cut(s) 409
BspTNI GGTCTC 1 cut(s) 674
BsrGI TGTACA 1 cut(s) 258
BsrI ACTGG 1 cut(s) 514
BssMI GATC 3 cut(s) 18, 51, 844
BssSI CACGAG 1 cut(s) 582
Bst2BI CACGAG 1 cut(s) 582
Bst2UI CCWGG 2 cut(s) 69, 802
Bst4CI ACNGT 1 cut(s) 793
Bst6I CTCTTC 2 cut(s) 464, 741
BstAFI CTTAAG 1 cut(s) 409
BstAUI TGTACA 1 cut(s) 258
BstC8I GCNNGC 3 cut(s) 26, 763, 822
BstDEI CTNAG 2 cut(s) 233, 849
BstF5I GGATG 1 cut(s) 821
BstKTI GATC 3 cut(s) 21, 54, 847
BstMAI GTCTC 4 cut(s) 644, 674, 858, 906
BstMBI GATC 3 cut(s) 18, 51, 844
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 69, 802
BstNSI RCATGY 1 cut(s) 757
BstSCI CCNGG 2 cut(s) 67, 800
BstSFI CTRYAG 3 cut(s) 766, 789, 924
BstV1I GCAGC 1 cut(s) 308
BstX2I RGATCY 2 cut(s) 51, 844
BstYI RGATCY 2 cut(s) 51, 844
Bsu15I ATCGAT 1 cut(s) 570
BsuRI GGCC 1 cut(s) 885
BsuTUI ATCGAT 1 cut(s) 570
BtsCI GGATG 1 cut(s) 821
Cac8I GCNNGC 3 cut(s) 26, 763, 822
CaiI CAGNNNCTG 1 cut(s) 904
ClaI ATCGAT 1 cut(s) 570
CseI GACGC 1 cut(s) 257
Csp6I GTAC 4 cut(s) 221, 259, 406, 517
CviAII CATG 4 cut(s) 164, 293, 683, 754
CviQI GTAC 4 cut(s) 221, 259, 406, 517
DdeI CTNAG 2 cut(s) 233, 849
DpnI GATC 3 cut(s) 20, 53, 846
DpnII GATC 3 cut(s) 18, 51, 844
DrdI GACNNNNNNGTC 1 cut(s) 942
DseDI GACNNNNNNGTC 1 cut(s) 942
Eam1104I CTCTTC 2 cut(s) 464, 741
EarI CTCTTC 2 cut(s) 464, 741
Ecl136II GAGCTC 1 cut(s) 550
Eco147I AGGCCT 1 cut(s) 885
Eco24I GRGCYC 1 cut(s) 552
Eco31I GGTCTC 1 cut(s) 674
Eco32I GATATC 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 550
Eco57I CTGAAG 3 cut(s) 422, 527, 791
Eco88I CYCGRG 1 cut(s) 647
EcoICRI GAGCTC 1 cut(s) 550
EcoRI GAATTC 2 cut(s) 149, 836
EcoRII CCWGG 2 cut(s) 67, 800
EcoRV GATATC 1 cut(s) 40
EcoT38I GRGCYC 1 cut(s) 552
FaeI CATG 4 cut(s) 167, 296, 686, 757
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FaqI GGGAC 1 cut(s) 460
FatI CATG 4 cut(s) 163, 292, 682, 753
FauNDI CATATG 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 1 cut(s) 828
FriOI GRGCYC 1 cut(s) 552
Fsp4HI GCNGC 1 cut(s) 297
FspBI CTAG 2 cut(s) 15, 621
GluI GCNGC 1 cut(s) 297
GsuI CTGGAG 2 cut(s) 497, 749
HaeIII GGCC 1 cut(s) 885
HgaI GACGC 1 cut(s) 257
Hin1II CATG 4 cut(s) 167, 296, 686, 757
HinfI GANTC 4 cut(s) 587, 733, 771, 943
HphI GGTGA 2 cut(s) 146, 436
Hpy166II GTNNAC 2 cut(s) 221, 775
Hpy188I TCNGA 5 cut(s) 402, 592, 627, 810, 906
Hpy188III TCNNGA 5 cut(s) 440, 545, 584, 649, 739
Hpy8I GTNNAC 2 cut(s) 221, 775
Hpy99I CGWCG 1 cut(s) 273
HpyAV CCTTC 1 cut(s) 554
HpyCH4III ACNGT 1 cut(s) 793
HpyCH4V TGCA 7 cut(s) 252, 296, 637, 686, 711, 719, 898
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 233, 849
Hsp92II CATG 4 cut(s) 167, 296, 686, 757
Kzo9I GATC 3 cut(s) 18, 51, 844
LmnI GCTCC 3 cut(s) 265, 294, 547
Lsp1109I GCAGC 1 cut(s) 308
LweI GCATC 2 cut(s) 67, 853
MaeI CTAG 2 cut(s) 15, 621
MaeIII GTNAC 2 cut(s) 474, 500
MalI GATC 3 cut(s) 20, 53, 846
MboI GATC 3 cut(s) 18, 51, 844
MboII GAAGA 3 cut(s) 481, 533, 758
MfeI CAATTG 1 cut(s) 276
MflI RGATCY 2 cut(s) 51, 844
MhlI GDGCHC 1 cut(s) 552
MluCI AATT 5 cut(s) 93, 149, 276, 377, 836
MlyI GAGTC 3 cut(s) 596, 780, 952
MnlI CCTC 9 cut(s) 65, 135, 160, 193, 465, 521, 530, 591, 875
MseI TTAA 3 cut(s) 47, 410, 494
MslI CAYNNNNRTG 1 cut(s) 106
MspA1I CMGCKG 1 cut(s) 929
MspCI CTTAAG 1 cut(s) 409
MspR9I CCNGG 2 cut(s) 69, 802
MunI CAATTG 1 cut(s) 276
MvaI CCWGG 2 cut(s) 69, 802
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeI CATATG 1 cut(s) 285
NdeII GATC 3 cut(s) 18, 51, 844
NlaIII CATG 4 cut(s) 167, 296, 686, 757
NmuCI GTSAC 1 cut(s) 500
NspI RCATGY 1 cut(s) 757
PaeR7I CTCGAG 1 cut(s) 647
PceI AGGCCT 1 cut(s) 885
PciI ACATGT 1 cut(s) 753
PfeI GAWTC 1 cut(s) 733
PflMI CCANNNNNTGG 1 cut(s) 781
PkrI GCNGC 1 cut(s) 298
PleI GAGTC 3 cut(s) 595, 779, 951
PpsI GAGTC 3 cut(s) 595, 779, 951
PscI ACATGT 1 cut(s) 753
Psp124BI GAGCTC 1 cut(s) 552
Psp6I CCWGG 2 cut(s) 67, 800
PspGI CCWGG 2 cut(s) 67, 800
PstNI CAGNNNCTG 1 cut(s) 904
PsuI RGATCY 2 cut(s) 51, 844
RsaI GTAC 4 cut(s) 222, 260, 407, 518
RsaNI GTAC 4 cut(s) 221, 259, 406, 517
RseI CAYNNNNRTG 1 cut(s) 106
SacI GAGCTC 1 cut(s) 552
SaqAI TTAA 3 cut(s) 47, 410, 494
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 3 cut(s) 18, 51, 844
ScaI AGTACT 1 cut(s) 407
SchI GAGTC 3 cut(s) 596, 780, 952
ScrFI CCNGG 2 cut(s) 69, 802
SduI GDGCHC 1 cut(s) 552
SfaNI GCATC 2 cut(s) 67, 853
SfcI CTRYAG 3 cut(s) 766, 789, 924
Sfr274I CTCGAG 1 cut(s) 647
SlaI CTCGAG 1 cut(s) 647
SmiMI CAYNNNNRTG 1 cut(s) 106
SmlI CTYRAG 2 cut(s) 409, 647
SmoI CTYRAG 2 cut(s) 409, 647
Sse9I AATT 5 cut(s) 93, 149, 276, 377, 836
SseBI AGGCCT 1 cut(s) 885
SsiI CCGC 3 cut(s) 80, 128, 929
SspMI CTAG 2 cut(s) 15, 621
SstI GAGCTC 1 cut(s) 552
StuI AGGCCT 1 cut(s) 885
StyD4I CCNGG 2 cut(s) 67, 800
TaaI ACNGT 1 cut(s) 793
TaqI TCGA 3 cut(s) 483, 570, 648
TasI AATT 5 cut(s) 93, 149, 276, 377, 836
TatI WGTACW 2 cut(s) 258, 405
TfiI GAWTC 1 cut(s) 733
Tru1I TTAA 3 cut(s) 47, 410, 494
Tru9I TTAA 3 cut(s) 47, 410, 494
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 1 cut(s) 849
Van91I CCANNNNNTGG 1 cut(s) 781
Vha464I CTTAAG 1 cut(s) 409
XapI RAATTY 3 cut(s) 149, 377, 836
XceI RCATGY 1 cut(s) 757
XhoI CTCGAG 1 cut(s) 647
XspI CTAG 2 cut(s) 15, 621
ZrmI AGTACT 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.