Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0017696

Physical Location & Seq

Genomic Coordinates Forward (+)

45201490 .. 45209329

Gene Structure 7840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0358000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGCTTTTGGGAGCAGTGGAGGTGAACCTGAAGTTGGGGAGTGGCTTTATCTGGGACTGGACTTTGGGACTTCTGGAGTGAGAAAGAGTGAAGAAAAAATGGATTGGGCCAGTTCATGGAAGGCCACACTCTTCTCACTTCTCGGAGACATTCCATCTCATCTTCGTAAACTGATTGCTTTCATTTCCAATGATGGGACTTCTACAACTACTCTTATTGTTGACAGCAACATAGGAGAGCCGTTATGGAGACCTTTCCTCTGCAATGAGAGCTGCCCTGATGCTTTACCGACAGTTAAATCTCTTGCTCCTCCAAACCATACAATCTGCTCTGGTTTTCCAAGTACTGATTGTGCTGTATGCACAGGAACCACTGATAGTATAGCAGCTTTTTTAGCAGCTCGTGCAACACAACCTGGGAAAGCTGTAACTTCATTGGGTTCAACACTTGCCATAAAACTGCTGAGCACTACTAGGATTGAGGATGCACGGTTTGGGGTGTATAGTCATCGCCTTGATGATAAGTGGCTTGTTGGAGGTGCTTCAAATACTGGTGGAGCAGTTCTTACACAAATTTTCACTGACGAGCAACTGGAGAAATTGAGTGAACAGATTGATCCCATGGAAGCTTCTGCTCTAGACTATTACCCACTGCAATCAGTTGGTGAGAGATTTCCAGTGGCAGATCCGAATATGGCTCCAAGATACTTGTTTTTTAAGGGAAGAGGAAATAAATATGAGTGGTGCGTTAGAGCAGCAAAGACTCGGAAAGGATACACCCAAGAACAATTTGATGAGAGAAAACACCTTCGCGGGAAAATAGGGTCAAGGTGGGGATTTTCTCAAAACCTTCGCTGCGAGGCTGTTTTTGACGAGGAGCATATTTTAAAGTTCATATTATTTTCAAAGCTCCTGAATATACAACTATGGGGGCCTATATTTGGGGCCTTGCGAGCAGGCCCGGCCCTGGCCCAGGGCAGGCAGGGCGATAGCCCAGGGCCCAAATTTTGGGAGAAACCTCTCTTCAACTCTTCATCTTCTAATTCTTCTCTTCTTCCTCTCAATTCACAGCTCCCAAGTCTCATTAATCATGGAGCAAATCGAGCAATATACCCGTTACCAATTTATGGAGAAGACAATTCATCTTCTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

384

Amino Acids

42.04

Weight (kDa)

6.34

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017696)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29801
prunus_persica	Prupe.1G273800_v2.0.a1 Prupe.1G285400_v2.0.a1
rosa_laevigata	RLG00000026075
rosa_rugosa	Rorug02G0357900 Rorug02G0358000
rosa_samantha	Rh1BG427400 Rh1DG460300 Rh1DG460400 Rh2AG407300 Rh2BG417800 Rh2CG393300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	117, 1008, 1127
AccII	CGCG	1 cut(s)	813
AciI	CCGC	1 cut(s)	813
AclWI	GGATC	2 cut(s)	611, 680
AcsI	RAATTY	2 cut(s)	573, 1004
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	1 cut(s)	346
AfiI	CCNNNNNNNGG	9 cut(s)	35, 117, 195, 941, 967, 973, 978, 1008, 1127
AgsI	TTSAA	4 cut(s)	444, 546, 906, 1027
AjnI	CCWGG	4 cut(s)	415, 966, 972, 994
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AluBI	AGCT	7 cut(s)	273, 389, 401, 425, 629, 910, 1072
AluI	AGCT	7 cut(s)	273, 389, 401, 425, 629, 910, 1072
Alw21I	GWGCWC	1 cut(s)	470
Alw26I	GTCTC	3 cut(s)	141, 244, 1085
AlwI	GGATC	2 cut(s)	611, 680
AoxI	GGCC	8 cut(s)	108, 123, 932, 945, 958, 963, 969, 998
ApaI	GGGCCC	1 cut(s)	1002
ApeKI	GCWGC	5 cut(s)	273, 386, 398, 755, 855
ApoI	RAATTY	2 cut(s)	573, 1004
AseI	ATTAAT	1 cut(s)	1086
AspS9I	GGNCC	8 cut(s)	108, 932, 945, 959, 964, 970, 998, 999
AsuC2I	CCSGG	1 cut(s)	962
AsuHPI	GGTGA	2 cut(s)	35, 677
BaeGI	GKGCMC	1 cut(s)	1002
BanII	GRGCYC	1 cut(s)	1002
BauI	CACGAG	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	1140
Bbv12I	GWGCWC	1 cut(s)	470
BbvI	GCAGC	5 cut(s)	260, 398, 410, 767, 842
BccI	CCATC	2 cut(s)	163, 188
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	4 cut(s)	417, 968, 974, 996
BciVI	GTATCC	1 cut(s)	767
BcnI	CCSGG	1 cut(s)	962
BcoDI	GTCTC	3 cut(s)	141, 244, 1085
BfaI	CTAG	2 cut(s)	474, 638
BfuI	GTATCC	1 cut(s)	767
BisI	GCNGC	5 cut(s)	274, 387, 399, 756, 856
BlpI	GCTNAGC	1 cut(s)	464
BlsI	GCNGC	5 cut(s)	275, 388, 400, 757, 857
BmcAI	AGTACT	1 cut(s)	346
Bme1390I	CCNGG	5 cut(s)	417, 962, 968, 974, 996
BmgT120I	GGNCC	8 cut(s)	108, 932, 945, 959, 964, 970, 998, 999
BmiI	GGNNCC	5 cut(s)	370, 699, 933, 946, 1000
BmrFI	CCNGG	5 cut(s)	417, 962, 968, 974, 996
BmsI	GCATC	2 cut(s)	271, 475
BpiI	GAAGAC	1 cut(s)	1140
BpmI	CTGGAG	2 cut(s)	96, 614
Bpu1102I	GCTNAGC	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	962
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	7 cut(s)	416, 621, 966, 972, 973, 994, 995
Bsc4I	CCNNNNNNNGG	9 cut(s)	35, 117, 195, 941, 967, 973, 978, 1008, 1127
Bse1I	ACTGG	5 cut(s)	63, 111, 556, 597, 677
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	4 cut(s)	417, 968, 974, 996
BseDI	CCNNGG	7 cut(s)	416, 621, 966, 972, 973, 994, 995
BseGI	GGATG	1 cut(s)	490
BseLI	CCNNNNNNNGG	9 cut(s)	35, 117, 195, 941, 967, 973, 978, 1008, 1127
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	5 cut(s)	63, 111, 556, 597, 677
BseRI	GAGGAG	2 cut(s)	300, 890
BseSI	GKGCMC	1 cut(s)	1002
BseXI	GCAGC	5 cut(s)	260, 398, 410, 767, 842
Bsh1236I	CGCG	1 cut(s)	813
BshFI	GGCC	8 cut(s)	110, 125, 934, 947, 960, 965, 971, 1000
BsiHKAI	GWGCWC	1 cut(s)	470
BsiSI	CCGG	1 cut(s)	962
BslFI	GGGAC	3 cut(s)	69, 82, 211
BslI	CCNNNNNNNGG	9 cut(s)	35, 117, 195, 941, 967, 973, 978, 1008, 1127
BsmAI	GTCTC	3 cut(s)	141, 244, 1085
BsmFI	GGGAC	3 cut(s)	69, 82, 211
BsnI	GGCC	8 cut(s)	110, 125, 934, 947, 960, 965, 971, 1000
Bso31I	GGTCTC	1 cut(s)	244
Bsp120I	GGGCCC	1 cut(s)	998
Bsp1286I	GDGCHC	2 cut(s)	470, 1002
Bsp143I	GATC	2 cut(s)	616, 685
Bsp1720I	GCTNAGC	1 cut(s)	464
Bsp19I	CCATGG	1 cut(s)	621
BspACI	CCGC	1 cut(s)	813
BspANI	GGCC	8 cut(s)	110, 125, 934, 947, 960, 965, 971, 1000
BspCNI	CTCAG	1 cut(s)	456
BspFNI	CGCG	1 cut(s)	813
BspLI	GGNNCC	5 cut(s)	370, 699, 933, 946, 1000
BspPI	GGATC	2 cut(s)	611, 680
BspTNI	GGTCTC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	271
BsrI	ACTGG	5 cut(s)	63, 111, 556, 597, 677
BssECI	CCNNGG	7 cut(s)	416, 621, 966, 972, 973, 994, 995
BssMI	GATC	2 cut(s)	616, 685
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	621
Bst2BI	CACGAG	1 cut(s)	402
Bst2UI	CCWGG	4 cut(s)	417, 968, 974, 996
Bst4CI	ACNGT	2 cut(s)	295, 492
Bst6I	CTCTTC	5 cut(s)	137, 718, 1028, 1036, 1056
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	3 cut(s)	954, 958, 980
BstDEI	CTNAG	1 cut(s)	464
BstDSI	CCRYGG	1 cut(s)	621
BstENI	CCTNNNNNAGG	1 cut(s)	971
BstF5I	GGATG	1 cut(s)	490
BstFNI	CGCG	1 cut(s)	813
BstKTI	GATC	2 cut(s)	619, 688
BstMAI	GTCTC	3 cut(s)	141, 244, 1085
BstMBI	GATC	2 cut(s)	616, 685
BstMWI	GCNNNNNNNGC	7 cut(s)	270, 395, 404, 953, 962, 984, 1103
BstNI	CCWGG	4 cut(s)	417, 968, 974, 996
BstSCI	CCNGG	5 cut(s)	415, 960, 966, 972, 994
BstSLI	GKGCMC	1 cut(s)	1002
BstUI	CGCG	1 cut(s)	813
BstV1I	GCAGC	5 cut(s)	260, 398, 410, 767, 842
BstV2I	GAAGAC	1 cut(s)	1140
BstX2I	RGATCY	1 cut(s)	685
BstYI	RGATCY	1 cut(s)	685
BsuI	GTATCC	1 cut(s)	767
BsuRI	GGCC	8 cut(s)	110, 125, 934, 947, 960, 965, 971, 1000
BtgI	CCRYGG	1 cut(s)	621
BtgZI	GCGATG	1 cut(s)	494
BtsCI	GGATG	1 cut(s)	490
BtsI	GCAGTG	2 cut(s)	22, 650
BtsIMutI	CAGTG	5 cut(s)	22, 372, 579, 650, 684
Cac8I	GCNNGC	3 cut(s)	954, 958, 980
Cfr13I	GGNCC	8 cut(s)	108, 932, 945, 959, 964, 970, 998, 999
Csp6I	GTAC	1 cut(s)	345
CviAII	CATG	3 cut(s)	117, 622, 1091
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	2 cut(s)	618, 687
DpnII	GATC	2 cut(s)	616, 685
DraI	TTTAAA	1 cut(s)	888
Eam1104I	CTCTTC	5 cut(s)	137, 718, 1028, 1036, 1056
EarI	CTCTTC	5 cut(s)	137, 718, 1028, 1036, 1056
Eco130I	CCWWGG	1 cut(s)	621
Eco24I	GRGCYC	1 cut(s)	1002
Eco31I	GGTCTC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	971
EcoO109I	RGGNCCY	3 cut(s)	932, 945, 998
EcoRII	CCWGG	4 cut(s)	415, 966, 972, 994
EcoT14I	CCWWGG	1 cut(s)	621
EcoT38I	GRGCYC	1 cut(s)	1002
ErhI	CCWWGG	1 cut(s)	621
FaeI	CATG	3 cut(s)	120, 625, 1094
FaqI	GGGAC	3 cut(s)	69, 82, 211
FatI	CATG	3 cut(s)	116, 621, 1090
FauI	CCCGC	1 cut(s)	806
Fnu4HI	GCNGC	5 cut(s)	274, 387, 399, 756, 856
FokI	GGATG	1 cut(s)	497
FriOI	GRGCYC	1 cut(s)	1002
Fsp4HI	GCNGC	5 cut(s)	274, 387, 399, 756, 856
FspBI	CTAG	2 cut(s)	474, 638
GluI	GCNGC	5 cut(s)	274, 387, 399, 756, 856
GsuI	CTGGAG	2 cut(s)	96, 614
HaeIII	GGCC	8 cut(s)	110, 125, 934, 947, 960, 965, 971, 1000
HapII	CCGG	1 cut(s)	962
Hin1II	CATG	3 cut(s)	120, 625, 1094
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	627
HinfI	GANTC	1 cut(s)	763
HpaII	CCGG	1 cut(s)	962
HphI	GGTGA	2 cut(s)	35, 677
Hpy166II	GTNNAC	4 cut(s)	26, 170, 223, 608
Hpy188I	TCNGA	3 cut(s)	146, 690, 768
Hpy188III	TCNNGA	3 cut(s)	75, 638, 913
Hpy8I	GTNNAC	4 cut(s)	26, 170, 223, 608
HpyAV	CCTTC	3 cut(s)	115, 818, 860
HpyCH4III	ACNGT	2 cut(s)	295, 492
HpyCH4V	TGCA	5 cut(s)	264, 363, 407, 488, 655
HpyF10VI	GCNNNNNNNGC	7 cut(s)	270, 395, 404, 953, 962, 984, 1103
HpyF3I	CTNAG	1 cut(s)	464
Hsp92II	CATG	3 cut(s)	120, 625, 1094
Kzo9I	GATC	2 cut(s)	616, 685
LmnI	GCTCC	8 cut(s)	12, 313, 557, 703, 877, 915, 1077, 1094
Lsp1109I	GCAGC	5 cut(s)	260, 398, 410, 767, 842
LweI	GCATC	2 cut(s)	271, 475
MaeI	CTAG	2 cut(s)	474, 638
MaeIII	GTNAC	2 cut(s)	427, 1116
MalI	GATC	2 cut(s)	618, 687
MboI	GATC	2 cut(s)	616, 685
MflI	RGATCY	1 cut(s)	685
MhlI	GDGCHC	2 cut(s)	470, 1002
MluCI	AATT	8 cut(s)	573, 599, 788, 1004, 1042, 1063, 1122, 1138
MlyI	GAGTC	1 cut(s)	757
MmeI	TCCRAC	1 cut(s)	514
MseI	TTAA	4 cut(s)	297, 717, 887, 1086
MspI	CCGG	1 cut(s)	962
MspR9I	CCNGG	5 cut(s)	417, 962, 968, 974, 996
MvaI	CCWGG	4 cut(s)	417, 968, 974, 996
MvnI	CGCG	1 cut(s)	813
MwoI	GCNNNNNNNGC	7 cut(s)	270, 395, 404, 953, 962, 984, 1103
NciI	CCSGG	1 cut(s)	962
NcoI	CCATGG	1 cut(s)	621
NdeII	GATC	2 cut(s)	616, 685
NlaIII	CATG	3 cut(s)	120, 625, 1094
NlaIV	GGNNCC	5 cut(s)	370, 699, 933, 946, 1000
PasI	CCCWGGG	2 cut(s)	973, 995
PflMI	CCANNNNNTGG	3 cut(s)	117, 1008, 1127
PkrI	GCNGC	5 cut(s)	275, 388, 400, 757, 857
PleI	GAGTC	1 cut(s)	757
PpsI	GAGTC	1 cut(s)	757
PshBI	ATTAAT	1 cut(s)	1086
Psp6I	CCWGG	4 cut(s)	415, 966, 972, 994
PspGI	CCWGG	4 cut(s)	415, 966, 972, 994
PspN4I	GGNNCC	5 cut(s)	370, 699, 933, 946, 1000
PspOMI	GGGCCC	1 cut(s)	998
PspPI	GGNCC	8 cut(s)	108, 932, 945, 959, 964, 970, 998, 999
PsuI	RGATCY	1 cut(s)	685
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
SaqAI	TTAA	4 cut(s)	297, 717, 887, 1086
SatI	GCNGC	5 cut(s)	274, 387, 399, 756, 856
Sau3AI	GATC	2 cut(s)	616, 685
Sau96I	GGNCC	8 cut(s)	108, 932, 945, 959, 964, 970, 998, 999
ScaI	AGTACT	1 cut(s)	346
SchI	GAGTC	1 cut(s)	757
ScrFI	CCNGG	5 cut(s)	417, 962, 968, 974, 996
SduI	GDGCHC	2 cut(s)	470, 1002
SfaNI	GCATC	2 cut(s)	271, 475
Sse9I	AATT	8 cut(s)	573, 599, 788, 1004, 1042, 1063, 1122, 1138
SsiI	CCGC	1 cut(s)	813
SspMI	CTAG	2 cut(s)	474, 638
StyD4I	CCNGG	5 cut(s)	415, 960, 966, 972, 994
StyI	CCWWGG	1 cut(s)	621
TaaI	ACNGT	2 cut(s)	295, 492
TaqI	TCGA	1 cut(s)	1102
TasI	AATT	8 cut(s)	573, 599, 788, 1004, 1042, 1063, 1122, 1138
TatI	WGTACW	1 cut(s)	344
Tru1I	TTAA	4 cut(s)	297, 717, 887, 1086
Tru9I	TTAA	4 cut(s)	297, 717, 887, 1086
TscAI	CASTG	5 cut(s)	22, 379, 586, 657, 684
TseI	GCWGC	5 cut(s)	273, 386, 398, 755, 855
TspDTI	ATGAA	6 cut(s)	105, 172, 423, 883, 1023, 1131
TspRI	CASTG	5 cut(s)	22, 379, 586, 657, 684
Van91I	CCANNNNNTGG	3 cut(s)	117, 1008, 1127
VspI	ATTAAT	1 cut(s)	1086
XagI	CCTNNNNNAGG	1 cut(s)	971
XapI	RAATTY	2 cut(s)	573, 1004
XbaI	TCTAGA	1 cut(s)	637
XspI	CTAG	2 cut(s)	474, 638
ZrmI	AGTACT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.