Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0017696

Physical Location & Seq

Genomic Coordinates Forward (+)

28642642 .. 28644656

Gene Structure 2015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G285400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGTTCATTGTGCTCTATGTGGTATTGTTTGGGACAAAAAGGAAATTATCAGAATTCTGCTTACCATGAATGGCCGTGGCCGAGATAGGAGGATCCGTGACAGGATTTGCGCCTTGACTAATGAATTAATTTCTGGTATCCTTTCCTTCCTGCCAATCAAGGATGCTGTAGCTACATCCACCCTTTCCCTCAAGATGGCTCAACTCCCTGACATTGAAATTGATGACTACTCACTACGCGACATTGACCATGATCAATGCCACACCATTGTCGGGAAAATTCTCAGCCCCCAAATGCCTCCACCCCTTGAACTCAGCAAGGTCAAAATGAAATTTTATGATCACACCTACCCCGCCGATATCACCACTTTGATCCGTGCTTCTCTAAAACGCATTGTCAAGGAGTTGGACCTTTCTATATGTCCAGATGACGAAGGAAACAGTGAAGAGGTTAACTTCCAGCTGCCCATGGAAGTATTTACAAATCAGCATCTCCAGGTTCTGAAATTGAGCAAAGTGAAGGTTGTTGTGCCACCAGATTCCCGCCATCTTTCAAGGTTCTGCATGTGGTACATCTCATATTATTGTGACAAATCCTTGCAAGATTTCTACAGTTTCTGCCCAGTGCTTGAGGACCTAACATTGGAGGGAGAGCTGAACGAATATCCTGATGAAGAAGTATGTTGTCTGTCTTTCCTTGTTCTGAGATGTGAATTATGGCCGGTTGGGAGGGATGGGTTGTTCTCTGTGATAAAGTGGGAGCTATTGCGATGGCGCGCATGTTTGCTACACAAATACGTTGGGAAGCAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0031090 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

272

Amino Acids

31.33

Weight (kDa)

5.84

Isoelectric Point (pI)

46.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017696)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29801
prunus_persica	Prupe.1G273800_v2.0.a1 Prupe.1G285400_v2.0.a1
rosa_laevigata	RLG00000026075
rosa_rugosa	Rorug02G0357900 Rorug02G0358000
rosa_samantha	Rh1BG427400 Rh1DG460300 Rh1DG460400 Rh2AG407300 Rh2BG417800 Rh2CG393300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	240, 777
AciI	CCGC	2 cut(s)	354, 544
AclWI	GGATC	3 cut(s)	88, 101, 367
AcoI	YGGCCR	3 cut(s)	73, 79, 719
AcsI	RAATTY	3 cut(s)	54, 279, 332
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	3 cut(s)	196, 273, 643
AgsI	TTSAA	3 cut(s)	218, 311, 555
AjnI	CCWGG	1 cut(s)	495
AloI	GAACNNNNNNTCC	2 cut(s)	725, 757
AluBI	AGCT	4 cut(s)	173, 463, 655, 763
AluI	AGCT	4 cut(s)	173, 463, 655, 763
Alw21I	GWGCWC	1 cut(s)	16
AlwI	GGATC	3 cut(s)	88, 101, 367
AlwNI	CAGNNNCTG	2 cut(s)	502, 618
AoxI	GGCC	3 cut(s)	73, 79, 719
ApeKI	GCWGC	1 cut(s)	463
ApoI	RAATTY	3 cut(s)	54, 279, 332
AseI	ATTAAT	1 cut(s)	128
AspLEI	GCGC	3 cut(s)	113, 777, 779
AspS9I	GGNCC	2 cut(s)	409, 634
AsuHPI	GGTGA	1 cut(s)	355
AvaII	GGWCC	2 cut(s)	409, 634
BamHI	GGATCC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	450
BccI	CCATC	4 cut(s)	190, 555, 728, 765
BceAI	ACGGC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	497
BciVI	GTATCC	1 cut(s)	149
BclI	TGATCA	2 cut(s)	253, 340
BfmI	CTRYAG	2 cut(s)	168, 610
BfuI	GTATCC	1 cut(s)	149
BisI	GCNGC	1 cut(s)	464
BlsI	GCNGC	1 cut(s)	465
Bme1390I	CCNGG	1 cut(s)	497
Bme18I	GGWCC	2 cut(s)	409, 634
BmgT120I	GGNCC	2 cut(s)	409, 634
BmiI	GGNNCC	1 cut(s)	95
BmrFI	CCNGG	1 cut(s)	497
BmrI	ACTGGG	1 cut(s)	617
BmsI	GCATC	2 cut(s)	154, 499
BmuI	ACTGGG	1 cut(s)	617
BpmI	CTGGAG	1 cut(s)	479
BpuEI	CTTGAG	2 cut(s)	176, 650
BsaJI	CCNNGG	2 cut(s)	76, 468
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	3 cut(s)	196, 273, 643
Bse118I	RCCGGY	1 cut(s)	721
Bse1I	ACTGG	1 cut(s)	623
BseBI	CCWGG	1 cut(s)	497
BseDI	CCNNGG	2 cut(s)	76, 468
BseGI	GGATG	3 cut(s)	169, 176, 739
BseLI	CCNNNNNNNGG	3 cut(s)	196, 273, 643
BseMII	CTCAG	3 cut(s)	298, 328, 695
BseNI	ACTGG	1 cut(s)	623
BsePI	GCGCGC	1 cut(s)	775
BseXI	GCAGC	1 cut(s)	450
Bsh1236I	CGCG	2 cut(s)	240, 777
BshFI	GGCC	3 cut(s)	75, 81, 721
BsiHKAI	GWGCWC	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	722
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	3 cut(s)	196, 273, 643
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	3 cut(s)	75, 81, 721
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	4 cut(s)	93, 253, 340, 372
Bsp19I	CCATGG	1 cut(s)	468
BspACI	CCGC	2 cut(s)	354, 544
BspANI	GGCC	3 cut(s)	75, 81, 721
BspCNI	CTCAG	3 cut(s)	297, 327, 696
BspFNI	CGCG	2 cut(s)	240, 777
BspLI	GGNNCC	1 cut(s)	95
BspPI	GGATC	3 cut(s)	88, 101, 367
BsrFI	RCCGGY	1 cut(s)	721
BsrI	ACTGG	1 cut(s)	623
BssAI	RCCGGY	1 cut(s)	721
BssECI	CCNNGG	2 cut(s)	76, 468
BssHII	GCGCGC	1 cut(s)	775
BssMI	GATC	4 cut(s)	93, 253, 340, 372
BssT1I	CCWWGG	1 cut(s)	468
Bst2UI	CCWGG	1 cut(s)	497
Bst4CI	ACNGT	2 cut(s)	443, 614
Bst6I	CTCTTC	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	777
BstDEI	CTNAG	3 cut(s)	284, 314, 704
BstDSI	CCRYGG	2 cut(s)	76, 468
BstF5I	GGATG	3 cut(s)	169, 176, 739
BstFNI	CGCG	2 cut(s)	240, 777
BstHHI	GCGC	3 cut(s)	113, 777, 779
BstKTI	GATC	4 cut(s)	96, 256, 343, 375
BstMBI	GATC	4 cut(s)	93, 253, 340, 372
BstNI	CCWGG	1 cut(s)	497
BstNSI	RCATGY	2 cut(s)	568, 783
BstSCI	CCNGG	1 cut(s)	495
BstSFI	CTRYAG	2 cut(s)	168, 610
BstUI	CGCG	2 cut(s)	240, 777
BstV1I	GCAGC	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	149
BsuRI	GGCC	3 cut(s)	75, 81, 721
BtgI	CCRYGG	2 cut(s)	76, 468
BtgZI	GCGATG	1 cut(s)	784
BtsCI	GGATG	3 cut(s)	169, 176, 739
BtsIMutI	CAGTG	2 cut(s)	448, 630
Cac8I	GCNNGC	1 cut(s)	777
CaiI	CAGNNNCTG	2 cut(s)	502, 618
CfoI	GCGC	3 cut(s)	113, 777, 779
Cfr10I	RCCGGY	1 cut(s)	721
Cfr13I	GGNCC	2 cut(s)	409, 634
Csp6I	GTAC	1 cut(s)	571
CviAII	CATG	5 cut(s)	67, 251, 469, 565, 780
CviJI	RGCY	9 cut(s)	75, 81, 173, 200, 288, 463, 655, 721, 763
CviKI_1	RGCY	9 cut(s)	75, 81, 173, 200, 288, 463, 655, 721, 763
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	3 cut(s)	284, 314, 704
DpnI	GATC	4 cut(s)	95, 255, 342, 374
DpnII	GATC	4 cut(s)	93, 253, 340, 372
EaeI	YGGCCR	3 cut(s)	73, 79, 719
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	468
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	409, 634
EcoO109I	RGGNCCY	1 cut(s)	634
EcoRI	GAATTC	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	495
EcoRV	GATATC	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	5 cut(s)	70, 254, 472, 568, 783
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	5 cut(s)	66, 250, 468, 564, 779
FauI	CCCGC	2 cut(s)	361, 551
FbaI	TGATCA	2 cut(s)	253, 340
Fnu4HI	GCNGC	1 cut(s)	464
FokI	GGATG	3 cut(s)	163, 176, 746
Fsp4HI	GCNGC	1 cut(s)	464
GlaI	GCGC	3 cut(s)	112, 776, 778
GluI	GCNGC	1 cut(s)	464
GsuI	CTGGAG	1 cut(s)	479
HaeIII	GGCC	3 cut(s)	75, 81, 721
HapII	CCGG	1 cut(s)	722
HhaI	GCGC	3 cut(s)	113, 777, 779
Hin1II	CATG	5 cut(s)	70, 254, 472, 568, 783
Hin6I	GCGC	3 cut(s)	111, 775, 777
HinP1I	GCGC	3 cut(s)	111, 775, 777
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HinfI	GANTC	1 cut(s)	539
HpaI	GTTAAC	1 cut(s)	454
HpaII	CCGG	1 cut(s)	722
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	3 cut(s)	53, 504, 705
Hpy188III	TCNNGA	4 cut(s)	193, 274, 425, 668
Hpy8I	GTNNAC	1 cut(s)	454
HpyAV	CCTTC	3 cut(s)	157, 428, 514
HpyCH4III	ACNGT	2 cut(s)	443, 614
HpyCH4IV	ACGT	1 cut(s)	798
HpyCH4V	TGCA	2 cut(s)	564, 601
HpyF3I	CTNAG	3 cut(s)	284, 314, 704
HpySE526I	ACGT	1 cut(s)	798
Hsp92II	CATG	5 cut(s)	70, 254, 472, 568, 783
HspAI	GCGC	3 cut(s)	111, 775, 777
Ksp22I	TGATCA	2 cut(s)	253, 340
KspAI	GTTAAC	1 cut(s)	454
Kzo9I	GATC	4 cut(s)	93, 253, 340, 372
LmnI	GCTCC	1 cut(s)	760
Lsp1109I	GCAGC	1 cut(s)	450
LweI	GCATC	2 cut(s)	154, 499
MaeII	ACGT	1 cut(s)	798
MaeIII	GTNAC	2 cut(s)	98, 587
MalI	GATC	4 cut(s)	95, 255, 342, 374
MboI	GATC	4 cut(s)	93, 253, 340, 372
MboII	GAAGA	2 cut(s)	458, 686
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	9 cut(s)	45, 54, 125, 129, 219, 279, 332, 506, 713
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	7 cut(s)	84, 200, 309, 442, 625, 640, 723
MseI	TTAA	2 cut(s)	128, 453
MspA1I	CMGCKG	1 cut(s)	463
MspI	CCGG	1 cut(s)	722
MspR9I	CCNGG	1 cut(s)	497
MvaI	CCWGG	1 cut(s)	497
MvnI	CGCG	2 cut(s)	240, 777
NcoI	CCATGG	1 cut(s)	468
NdeII	GATC	4 cut(s)	93, 253, 340, 372
NlaIII	CATG	5 cut(s)	70, 254, 472, 568, 783
NlaIV	GGNNCC	1 cut(s)	95
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	2 cut(s)	98, 587
NspI	RCATGY	2 cut(s)	568, 783
PauI	GCGCGC	1 cut(s)	775
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	1 cut(s)	465
PpuMI	RGGWCCY	1 cut(s)	634
PshBI	ATTAAT	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	634
Psp6I	CCWGG	1 cut(s)	495
PspGI	CCWGG	1 cut(s)	495
PspN4I	GGNNCC	1 cut(s)	95
PspPI	GGNCC	2 cut(s)	409, 634
PspPPI	RGGWCCY	1 cut(s)	634
PstNI	CAGNNNCTG	2 cut(s)	502, 618
PsuI	RGATCY	1 cut(s)	93
PteI	GCGCGC	1 cut(s)	775
PvuII	CAGCTG	1 cut(s)	463
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
SaqAI	TTAA	2 cut(s)	128, 453
SatI	GCNGC	1 cut(s)	464
Sau3AI	GATC	4 cut(s)	93, 253, 340, 372
Sau96I	GGNCC	2 cut(s)	409, 634
ScrFI	CCNGG	1 cut(s)	497
SduI	GDGCHC	1 cut(s)	16
SfaNI	GCATC	2 cut(s)	154, 499
SfcI	CTRYAG	2 cut(s)	168, 610
SinI	GGWCC	2 cut(s)	409, 634
SmlI	CTYRAG	2 cut(s)	191, 629
SmoI	CTYRAG	2 cut(s)	191, 629
Sse9I	AATT	9 cut(s)	45, 54, 125, 129, 219, 279, 332, 506, 713
SsiI	CCGC	2 cut(s)	354, 544
StyD4I	CCNGG	1 cut(s)	495
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	443, 614
TaiI	ACGT	1 cut(s)	801
TasI	AATT	9 cut(s)	45, 54, 125, 129, 219, 279, 332, 506, 713
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	2 cut(s)	128, 453
Tru9I	TTAA	2 cut(s)	128, 453
TscAI	CASTG	2 cut(s)	448, 630
TseFI	GTSAC	2 cut(s)	98, 587
TseI	GCWGC	1 cut(s)	463
Tsp45I	GTSAC	2 cut(s)	98, 587
TspDTI	ATGAA	4 cut(s)	83, 138, 344, 687
TspGWI	ACGGA	2 cut(s)	86, 365
TspRI	CASTG	2 cut(s)	448, 630
VpaK11BI	GGWCC	2 cut(s)	409, 634
VspI	ATTAAT	1 cut(s)	128
XapI	RAATTY	3 cut(s)	54, 279, 332
XceI	RCATGY	2 cut(s)	568, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.