FvH4_6g30610

Serine aminopeptidase, S33

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
23705700 .. 23707550
1851 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30610.t4

Sequence Viewer

Length: 990 bp
ATGTCAACGGAAAAATCGGCATCATCGGCGCCGGAGACGCCTCCGAATTTCTGGGGCGACACCCCCGCGGAGGAGTACTACGCCTCCGAAGGGGTGCGCCACACCCAATCCTACTTCGAAACCCCCAACGGCAAGATCTTCACCCAAAGCTTCCTGCCGTTGGATCCCGACCTCCCGGTCAAAGCCACCGTCTTCATGACCCACGGCTACGGCTCCGACAGCGGCTGGCTCTTCCAGAAAATCTGCATCGCCTTCTCCACCTGGGGCTACGCCGTCTTCGCCGCCGACCTCCTCGGCCACGGCCGCTCCGACGGCCTCCGCTGCTACCTCGGCGACATGGAGAAGGTTGCCGCCACCTCCCTCTCCTTCTTCCTCCACGTCCGGCGCAGCGAGCCCTACCGCCACCTCCCGGCCTTCCTCTTCGGCGAGTCCATGGGCGGCCTCGCCACCATGCTCATGTACTTCCAGTCCTCCGAGCCCGACAGGTGGACGGGCCTGATCTTCTCTGCTCCCCTCTTCGTGATCCCGGAGAACATGAAGCCCAGCAGGCTCCATCTCTTCGTGTACGGACTCCTGTTCGGCATCGCGGACACTTGGGCCGCGATGCCGGACAACAAGATGGTCGGGAAGGCCATCAAGGACCCGGAGAAGCTCAAGATTATAGCTTCAAACCCGAGGAGGTACACTGGGCCACCCAGGGTGGGGACCATGAGGGAGATTGCTAGGGTGTGCCAGTACATACAGGATAACTTCTCCCGCGTAACGGCGCCGTTTCTGACCGTGCACGGGACCGCCGACGGGGTGACGTGTCCGACGTCGTCGAAGCTGTTGTATGAGAAGGCGTCGAGCGTGGACAAGAGCTTGAAGATTTACGAGGGGATGTACCATTCGTTGATACAAGGAGAGACCGATGAGAATGCCAACCTTGTGTTGCAGGATATGAGAGAGTGGATTGATGAGAGGGTCGAGAAGTATGGACCTAAACCCTAA

Protein Analysis

330

Amino Acids

36.9

Weight (kDa)

6.09

Isoelectric Point (pI)

34.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase_4 PF12146 60 - 302 2.9e-51 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 64 - 200 8e-08 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 65 - 296 5e-07 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009854)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AatII GACGTC 1 cut(s) 818
AccB1I GGYRCC 2 cut(s) 28, 766
AccBSI CCGCTC 1 cut(s) 306
AccII CGCG 4 cut(s) 68, 587, 602, 759
AclWI GGATC 3 cut(s) 158, 171, 517
AcoI YGGCCR 2 cut(s) 295, 301
AcsI RAATTY 1 cut(s) 46
AcyI GRCGYC 5 cut(s) 29, 38, 767, 815, 842
AfaI GTAC 6 cut(s) 77, 461, 566, 683, 737, 884
AflIII ACRYGT 1 cut(s) 806
AgsI TTSAA 2 cut(s) 669, 865
AjiI CACGTC 2 cut(s) 379, 807
AjnI CCWGG 2 cut(s) 260, 695
AluBI AGCT 5 cut(s) 150, 652, 665, 826, 861
AluI AGCT 5 cut(s) 150, 652, 665, 826, 861
Alw21I GWGCWC 1 cut(s) 786
Alw26I GTCTC 2 cut(s) 29, 899
Alw44I GTGCAC 1 cut(s) 782
AlwI GGATC 3 cut(s) 158, 171, 517
AlwNI CAGNNNCTG 1 cut(s) 225
Ama87I CYCGRG 1 cut(s) 673
AoxI GGCC 9 cut(s) 295, 301, 313, 411, 439, 493, 597, 630, 689
ApaLI GTGCAC 1 cut(s) 782
ApeKI GCWGC 2 cut(s) 321, 387
ApoI RAATTY 1 cut(s) 46
ArsI GACNNNNNNTTYG 2 cut(s) 174, 206
AspLEI GCGC 4 cut(s) 31, 99, 387, 769
AspS9I GGNCC 7 cut(s) 493, 597, 640, 689, 705, 789, 977
AsuC2I CCSGG 4 cut(s) 176, 410, 527, 644
AsuHPI GGTGA 2 cut(s) 133, 814
AsuII TTCGAA 1 cut(s) 117
AvaI CYCGRG 1 cut(s) 673
AvaII GGWCC 4 cut(s) 640, 705, 789, 977
BaeGI GKGCMC 1 cut(s) 786
BamHI GGATCC 1 cut(s) 163
BanI GGYRCC 2 cut(s) 28, 766
BanII GRGCYC 2 cut(s) 396, 480
BbsI GAAGAC 2 cut(s) 184, 268
Bbv12I GWGCWC 1 cut(s) 786
BbvI GCAGC 2 cut(s) 308, 399
BccI CCATC 3 cut(s) 561, 613, 641
BceAI ACGGC 9 cut(s) 142, 145, 220, 226, 257, 316, 328, 754, 780
BcgI CGANNNNNNTGC 2 cut(s) 899, 933
BciT130I CCWGG 2 cut(s) 262, 697
BcnI CCSGG 4 cut(s) 176, 410, 527, 644
BcoDI GTCTC 2 cut(s) 29, 899
BfaI CTAG 1 cut(s) 723
BfoI RGCGCY 2 cut(s) 32, 770
BglI GCCNNNNNGGC 1 cut(s) 547
BglII AGATCT 1 cut(s) 135
BisI GCNGC 8 cut(s) 223, 282, 304, 322, 351, 388, 439, 600
BlsI GCNGC 8 cut(s) 224, 283, 305, 323, 352, 389, 440, 601
BmcAI AGTACT 1 cut(s) 77
Bme1390I CCNGG 6 cut(s) 176, 262, 410, 527, 644, 697
Bme18I GGWCC 4 cut(s) 640, 705, 789, 977
BmeT110I CYCGRG 1 cut(s) 673
BmgBI CACGTC 2 cut(s) 379, 807
BmgT120I GGNCC 7 cut(s) 493, 597, 640, 689, 705, 789, 977
BmiI GGNNCC 8 cut(s) 30, 165, 214, 551, 642, 706, 768, 790
BmrFI CCNGG 6 cut(s) 176, 262, 410, 527, 644, 697
BmrI ACTGGG 1 cut(s) 696
BmsI GCATC 4 cut(s) 29, 255, 591, 594
BmuI ACTGGG 1 cut(s) 696
BpiI GAAGAC 2 cut(s) 184, 268
Bpu14I TTCGAA 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 638
BpuMI CCSGG 4 cut(s) 176, 410, 527, 644
BsaHI GRCGYC 5 cut(s) 29, 38, 767, 815, 842
BsaI GGTCTC 1 cut(s) 899
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 290, 320
Bse1I ACTGG 3 cut(s) 466, 691, 733
BseBI CCWGG 2 cut(s) 262, 697
BseGI GGATG 1 cut(s) 885
BseNI ACTGG 3 cut(s) 466, 691, 733
BseRI GAGGAG 3 cut(s) 86, 281, 691
BseSI GKGCMC 1 cut(s) 786
BseX3I CGGCCG 1 cut(s) 301
BseXI GCAGC 2 cut(s) 308, 399
BseYI CCCAGC 1 cut(s) 542
Bsh1236I CGCG 4 cut(s) 68, 587, 602, 759
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 9 cut(s) 297, 303, 315, 413, 441, 495, 599, 632, 691
BshNI GGYRCC 2 cut(s) 28, 766
BsiEI CGRYCG 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 786
BsiHKCI CYCGRG 1 cut(s) 673
BsiSI CCGG 7 cut(s) 32, 176, 382, 410, 527, 608, 644
BslFI GGGAC 2 cut(s) 718, 802
BsmAI GTCTC 2 cut(s) 29, 899
BsmBI CGTCTC 1 cut(s) 29
BsmFI GGGAC 2 cut(s) 718, 802
BsmI GAATGC 1 cut(s) 922
BsnI GGCC 9 cut(s) 297, 303, 315, 413, 441, 495, 599, 632, 691
Bso31I GGTCTC 1 cut(s) 899
BsoBI CYCGRG 1 cut(s) 673
Bsp119I TTCGAA 1 cut(s) 117
Bsp1286I GDGCHC 3 cut(s) 396, 480, 786
Bsp143I GATC 4 cut(s) 135, 163, 498, 522
Bsp19I CCATGG 1 cut(s) 432
BspANI GGCC 9 cut(s) 297, 303, 315, 413, 441, 495, 599, 632, 691
BspFNI CGCG 4 cut(s) 68, 587, 602, 759
BspHI TCATGA 1 cut(s) 195
BspLI GGNNCC 8 cut(s) 30, 165, 214, 551, 642, 706, 768, 790
BspPI GGATC 3 cut(s) 158, 171, 517
BspQI GCTCTTC 1 cut(s) 236
BspT104I TTCGAA 1 cut(s) 117
BspT107I GGYRCC 2 cut(s) 28, 766
BspTNI GGTCTC 1 cut(s) 899
BsrBI CCGCTC 1 cut(s) 306
BsrI ACTGG 3 cut(s) 466, 691, 733
BssMI GATC 4 cut(s) 135, 163, 498, 522
BssNI GRCGYC 5 cut(s) 29, 38, 767, 815, 842
BssT1I CCWWGG 1 cut(s) 432
Bst2UI CCWGG 2 cut(s) 262, 697
Bst4CI ACNGT 2 cut(s) 190, 781
Bst6I CTCTTC 4 cut(s) 236, 425, 521, 563
BstACI GRCGYC 5 cut(s) 29, 38, 767, 815, 842
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 3 cut(s) 227, 392, 548
BstDSI CCRYGG 4 cut(s) 66, 202, 298, 432
BstF5I GGATG 1 cut(s) 885
BstFNI CGCG 4 cut(s) 68, 587, 602, 759
BstH2I RGCGCY 2 cut(s) 32, 770
BstHHI GCGC 4 cut(s) 31, 99, 387, 769
BstKTI GATC 4 cut(s) 138, 166, 501, 525
BstMAI GTCTC 2 cut(s) 29, 899
BstMBI GATC 4 cut(s) 135, 163, 498, 522
BstMCI CGRYCG 1 cut(s) 304
BstNI CCWGG 2 cut(s) 262, 697
BstSCI CCNGG 6 cut(s) 174, 260, 408, 525, 642, 695
BstSLI GKGCMC 1 cut(s) 786
BstUI CGCG 4 cut(s) 68, 587, 602, 759
BstV1I GCAGC 2 cut(s) 308, 399
BstV2I GAAGAC 2 cut(s) 184, 268
BstX2I RGATCY 2 cut(s) 135, 163
BstYI RGATCY 2 cut(s) 135, 163
BstZI CGGCCG 1 cut(s) 301
BsuRI GGCC 9 cut(s) 297, 303, 315, 413, 441, 495, 599, 632, 691
BtgI CCRYGG 4 cut(s) 66, 202, 298, 432
BtgZI GCGATG 3 cut(s) 232, 568, 617
BtrI CACGTC 2 cut(s) 379, 807
BtsCI GGATG 1 cut(s) 885
BtsIMutI CAGTG 1 cut(s) 684
Cac8I GCNNGC 3 cut(s) 227, 392, 548
CaiI CAGNNNCTG 1 cut(s) 225
CciI TCATGA 1 cut(s) 195
CfoI GCGC 4 cut(s) 31, 99, 387, 769
Cfr13I GGNCC 7 cut(s) 493, 597, 640, 689, 705, 789, 977
Cfr42I CCGCGG 1 cut(s) 69
CseI GACGC 2 cut(s) 46, 831
Csp6I GTAC 6 cut(s) 76, 460, 565, 682, 736, 883
CviAII CATG 7 cut(s) 196, 337, 433, 451, 457, 535, 709
CviQI GTAC 6 cut(s) 76, 460, 565, 682, 736, 883
DinI GGCGCC 2 cut(s) 30, 768
DpnI GATC 4 cut(s) 137, 165, 500, 524
DpnII GATC 4 cut(s) 135, 163, 498, 522
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
EaeI YGGCCR 2 cut(s) 295, 301
EagI CGGCCG 1 cut(s) 301
Eam1104I CTCTTC 4 cut(s) 236, 425, 521, 563
EarI CTCTTC 4 cut(s) 236, 425, 521, 563
EclXI CGGCCG 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 432
Eco24I GRGCYC 2 cut(s) 396, 480
Eco31I GGTCTC 1 cut(s) 899
Eco47I GGWCC 4 cut(s) 640, 705, 789, 977
Eco52I CGGCCG 1 cut(s) 301
Eco88I CYCGRG 1 cut(s) 673
EcoO109I RGGNCCY 1 cut(s) 640
EcoRII CCWGG 2 cut(s) 260, 695
EcoT14I CCWWGG 1 cut(s) 432
EcoT38I GRGCYC 2 cut(s) 396, 480
EgeI GGCGCC 2 cut(s) 30, 768
EheI GGCGCC 2 cut(s) 30, 768
ErhI CCWWGG 1 cut(s) 432
Esp3I CGTCTC 1 cut(s) 29
FaeI CATG 7 cut(s) 199, 340, 436, 454, 460, 538, 712
FaqI GGGAC 2 cut(s) 718, 802
FatI CATG 7 cut(s) 195, 336, 432, 450, 456, 534, 708
FauI CCCGC 2 cut(s) 73, 764
Fnu4HI GCNGC 8 cut(s) 223, 282, 304, 322, 351, 388, 439, 600
FokI GGATG 1 cut(s) 892
FriOI GRGCYC 2 cut(s) 396, 480
Fsp4HI GCNGC 8 cut(s) 223, 282, 304, 322, 351, 388, 439, 600
FspBI CTAG 1 cut(s) 723
GlaI GCGC 4 cut(s) 30, 98, 386, 768
GluI GCNGC 8 cut(s) 223, 282, 304, 322, 351, 388, 439, 600
GsaI CCCAGC 1 cut(s) 546
HaeII RGCGCY 2 cut(s) 32, 770
HaeIII GGCC 9 cut(s) 297, 303, 315, 413, 441, 495, 599, 632, 691
HapII CCGG 7 cut(s) 32, 176, 382, 410, 527, 608, 644
HgaI GACGC 2 cut(s) 46, 831
HhaI GCGC 4 cut(s) 31, 99, 387, 769
Hin1I GRCGYC 5 cut(s) 29, 38, 767, 815, 842
Hin1II CATG 7 cut(s) 199, 340, 436, 454, 460, 538, 712
Hin6I GCGC 4 cut(s) 29, 97, 385, 767
HinP1I GCGC 4 cut(s) 29, 97, 385, 767
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 148
HinfI GANTC 2 cut(s) 428, 570
HpaII CCGG 7 cut(s) 32, 176, 382, 410, 527, 608, 644
HphI GGTGA 2 cut(s) 133, 814
Hpy166II GTNNAC 6 cut(s) 6, 489, 565, 684, 784, 853
Hpy188I TCNGA 7 cut(s) 45, 88, 217, 310, 475, 777, 813
Hpy188III TCNNGA 7 cut(s) 167, 196, 235, 520, 625, 655, 967
Hpy8I GTNNAC 6 cut(s) 6, 489, 565, 684, 784, 853
Hpy99I CGWCG 6 cut(s) 314, 800, 817, 820, 823, 847
HpyAV CCTTC 7 cut(s) 83, 262, 337, 376, 424, 622, 832
HpyCH4III ACNGT 2 cut(s) 190, 781
HpyCH4IV ACGT 3 cut(s) 378, 806, 815
HpyCH4V TGCA 3 cut(s) 246, 784, 934
HpySE526I ACGT 3 cut(s) 378, 806, 815
Hsp92I GRCGYC 5 cut(s) 29, 38, 767, 815, 842
Hsp92II CATG 7 cut(s) 199, 340, 436, 454, 460, 538, 712
HspAI GCGC 4 cut(s) 29, 97, 385, 767
KasI GGCGCC 2 cut(s) 28, 766
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 4 cut(s) 135, 163, 498, 522
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 4 cut(s) 218, 311, 514, 555
Lsp1109I GCAGC 2 cut(s) 308, 399
LweI GCATC 4 cut(s) 29, 255, 591, 594
MaeI CTAG 1 cut(s) 723
MaeII ACGT 3 cut(s) 378, 806, 815
MaeIII GTNAC 2 cut(s) 760, 802
MalI GATC 4 cut(s) 137, 165, 500, 524
MbiI CCGCTC 1 cut(s) 306
MboI GATC 4 cut(s) 135, 163, 498, 522
MflI RGATCY 2 cut(s) 135, 163
MhlI GDGCHC 3 cut(s) 396, 480, 786
MluCI AATT 1 cut(s) 46
Mly113I GGCGCC 2 cut(s) 29, 767
MlyI GAGTC 2 cut(s) 437, 564
MmeI TCCRAC 4 cut(s) 141, 240, 333, 836
MslI CAYNNNNRTG 1 cut(s) 455
MspA1I CMGCKG 3 cut(s) 68, 222, 321
MspI CCGG 7 cut(s) 32, 176, 382, 410, 527, 608, 644
MspR9I CCNGG 6 cut(s) 176, 262, 410, 527, 644, 697
Mva1269I GAATGC 1 cut(s) 922
MvaI CCWGG 2 cut(s) 262, 697
MvnI CGCG 4 cut(s) 68, 587, 602, 759
NarI GGCGCC 2 cut(s) 29, 767
NciI CCSGG 4 cut(s) 176, 410, 527, 644
NcoI CCATGG 1 cut(s) 432
NdeII GATC 4 cut(s) 135, 163, 498, 522
NlaIII CATG 7 cut(s) 199, 340, 436, 454, 460, 538, 712
NlaIV GGNNCC 8 cut(s) 30, 165, 214, 551, 642, 706, 768, 790
NmeAIII GCCGAG 2 cut(s) 273, 309
NmuCI GTSAC 1 cut(s) 802
NspV TTCGAA 1 cut(s) 117
PagI TCATGA 1 cut(s) 195
PasI CCCWGGG 1 cut(s) 696
PciSI GCTCTTC 1 cut(s) 236
PcsI WCGNNNNNNNCGW 3 cut(s) 306, 792, 812
PctI GAATGC 1 cut(s) 922
PflFI GACNNNGTC 1 cut(s) 817
PfoI TCCNGGA 1 cut(s) 525
PkrI GCNGC 8 cut(s) 224, 283, 305, 323, 352, 389, 440, 601
PleI GAGTC 2 cut(s) 436, 564
PluTI GGCGCC 2 cut(s) 32, 770
PpsI GAGTC 2 cut(s) 436, 564
PpuMI RGGWCCY 1 cut(s) 640
Psp5II RGGWCCY 1 cut(s) 640
Psp6I CCWGG 2 cut(s) 260, 695
PspFI CCCAGC 1 cut(s) 542
PspGI CCWGG 2 cut(s) 260, 695
PspN4I GGNNCC 8 cut(s) 30, 165, 214, 551, 642, 706, 768, 790
PspPI GGNCC 7 cut(s) 493, 597, 640, 689, 705, 789, 977
PspPPI RGGWCCY 1 cut(s) 640
PstNI CAGNNNCTG 1 cut(s) 225
PsuI RGATCY 2 cut(s) 135, 163
PsyI GACNNNGTC 1 cut(s) 817
RsaI GTAC 6 cut(s) 77, 461, 566, 683, 737, 884
RsaNI GTAC 6 cut(s) 76, 460, 565, 682, 736, 883
RseI CAYNNNNRTG 1 cut(s) 455
SacII CCGCGG 1 cut(s) 69
SapI GCTCTTC 1 cut(s) 236
SatI GCNGC 8 cut(s) 223, 282, 304, 322, 351, 388, 439, 600
Sau3AI GATC 4 cut(s) 135, 163, 498, 522
Sau96I GGNCC 7 cut(s) 493, 597, 640, 689, 705, 789, 977
ScaI AGTACT 1 cut(s) 77
SchI GAGTC 2 cut(s) 437, 564
ScrFI CCNGG 6 cut(s) 176, 262, 410, 527, 644, 697
SduI GDGCHC 3 cut(s) 396, 480, 786
SfaNI GCATC 4 cut(s) 29, 255, 591, 594
SfoI GGCGCC 2 cut(s) 30, 768
Sfr303I CCGCGG 1 cut(s) 69
SfuI TTCGAA 1 cut(s) 117
SgrBI CCGCGG 1 cut(s) 69
SinI GGWCC 4 cut(s) 640, 705, 789, 977
SmiMI CAYNNNNRTG 1 cut(s) 455
SmlI CTYRAG 1 cut(s) 653
SmoI CTYRAG 1 cut(s) 653
Sse9I AATT 1 cut(s) 46
SspDI GGCGCC 2 cut(s) 28, 766
SspMI CTAG 1 cut(s) 723
StyD4I CCNGG 6 cut(s) 174, 260, 408, 525, 642, 695
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 2 cut(s) 190, 781
TaiI ACGT 3 cut(s) 381, 809, 818
TaqI TCGA 4 cut(s) 117, 821, 845, 966
TaqII GACCGA 1 cut(s) 923
TasI AATT 1 cut(s) 46
TatI WGTACW 3 cut(s) 75, 459, 735
TauI GCSGC 6 cut(s) 225, 284, 306, 353, 441, 602
TscAI CASTG 1 cut(s) 691
TseFI GTSAC 1 cut(s) 802
TseI GCWGC 2 cut(s) 321, 387
Tsp45I GTSAC 1 cut(s) 802
TspDTI ATGAA 2 cut(s) 184, 551
TspGWI ACGGA 2 cut(s) 23, 582
TspRI CASTG 1 cut(s) 691
Tth111I GACNNNGTC 1 cut(s) 817
VneI GTGCAC 1 cut(s) 782
VpaK11BI GGWCC 4 cut(s) 640, 705, 789, 977
XapI RAATTY 1 cut(s) 46
XspI CTAG 1 cut(s) 723
ZraI GACGTC 1 cut(s) 816
ZrmI AGTACT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.