Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009854

Physical Location & Seq

Genomic Coordinates Reverse (-)

24416232 .. 24416540

Gene Structure 309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1201900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGAAAAAGTCGCCGTTACTTCCTTCTCCTACTTCCTTCACGTCCGCCAGTCCGAACCCTACCTCTGTCTCCCTGCCTTCCTGTTCGGCGAGTCCCTGGATGGCTTAGCCACCATGCTCATGTACATCCAATCCCCTCCCGACATGTGGACGGGCTTAATCTTCTCCTCCCCGCTCTTCGTCAAATCGGAAAACATGAAGCCCAGCAAAGTCCACCTCTTTGGAATCGCCGGCACGTGGGTGATGCGAAAATTACTTAACACACAAATTAAACCCTCTTGTATCAATTGTAGTAAAGAATGTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0003846 GO:0004620 GO:0004622 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005911 GO:0006629 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008374 GO:0009506 GO:0009636 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016298 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0030054 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0050896 GO:0052689 GO:0055044 GO:0071704 GO:0071944 GO:0090430 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

103

Amino Acids

11.56

Weight (kDa)

8.75

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	13 - 94	8.1e-07	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52760
fragaria_vesca	FvH4_6g30610 FvH4_6g30610 FvH4_6g30610 FvH4_6g30610
malus_domestica	MD17G1201900.v1.1
prunus_persica	Prupe.5G109300_v2.0.a1
pyrus_communis	pycom17g20580 pycom17g20590 pycom17g20600 pycom17g20610
rosa_chinensis	RchiOBHm_Chr2g0137021
rosa_laevigata	RLG00000019597
rosa_multiflora	Rmu_sc0001374.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107770
rosa_rugosa	Rorug02G0337200
rosa_samantha	Rh2AG386300 Rh2BG393100 Rh2CG373600 Rh2DG409300
rosa_wichuraiana	Rw2G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	175
AciI	CCGC	2 cut(s)	46, 173
AcvI	CACGTG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	2 cut(s)	147, 237
AflIII	ACRYGT	1 cut(s)	144
AjiI	CACGTC	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	96
AleI	CACNNNNGTG	1 cut(s)	239
Alw26I	GTCTC	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	253
BbrPI	CACGTG	1 cut(s)	237
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	74
BlpI	GCTNAGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	98
BmgBI	CACGTC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	234
Bpu1102I	GCTNAGC	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 237
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	2 cut(s)	106, 126
BseLI	CCNNNNNNNGG	2 cut(s)	147, 237
BseNI	ACTGG	1 cut(s)	49
BseRI	GAGGAG	1 cut(s)	157
BseYI	CCCAGC	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	147, 237
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	79
Bsp1407I	TGTACA	1 cut(s)	123
Bsp1720I	GCTNAGC	1 cut(s)	106
BspACI	CCGC	2 cut(s)	46, 173
BspQI	GCTCTTC	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	175
BsrFI	RCCGGY	1 cut(s)	230
BsrGI	TGTACA	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	182
BstAUI	TGTACA	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	1 cut(s)	106
BstF5I	GGATG	2 cut(s)	106, 126
BstMAI	GTCTC	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	96
BstXI	CCANNNNNNTGG	1 cut(s)	221
BtrI	CACGTC	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	106, 126
Cac8I	GCNNGC	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	4 cut(s)	115, 121, 145, 196
CviJI	RGCY	4 cut(s)	105, 110, 156, 202
CviKI_1	RGCY	4 cut(s)	105, 110, 156, 202
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
EciI	GGCGGA	1 cut(s)	35
Eco72I	CACGTG	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	96
FaeI	CATG	4 cut(s)	118, 124, 148, 199
FaiI	YATR	4 cut(s)	116, 122, 146, 197
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	4 cut(s)	114, 120, 144, 195
FauI	CCCGC	1 cut(s)	180
FokI	GGATG	2 cut(s)	113, 113
GsaI	CCCAGC	1 cut(s)	207
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	4 cut(s)	118, 124, 148, 199
HinfI	GANTC	2 cut(s)	92, 225
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	2 cut(s)	150, 214
Hpy188I	TCNGA	2 cut(s)	55, 190
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	2 cut(s)	150, 214
HpyAV	CCTTC	3 cut(s)	34, 47, 88
HpyCH4IV	ACGT	2 cut(s)	42, 236
HpyF3I	CTNAG	1 cut(s)	106
HpySE526I	ACGT	2 cut(s)	42, 236
Hsp92II	CATG	4 cut(s)	118, 124, 148, 199
KroI	GCCGGC	1 cut(s)	230
KroNI	GCCGGC	1 cut(s)	232
LguI	GCTCTTC	1 cut(s)	182
LpnPI	CCDG	7 cut(s)	62, 83, 87, 95, 110, 217, 244
LweI	GCATC	1 cut(s)	234
MaeII	ACGT	2 cut(s)	42, 236
MaeIII	GTNAC	1 cut(s)	16
MbiI	CCGCTC	1 cut(s)	175
MboII	GAAGA	2 cut(s)	154, 169
MfeI	CAATTG	1 cut(s)	286
MluCI	AATT	3 cut(s)	251, 267, 286
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	5 cut(s)	74, 147, 178, 227, 286
MroNI	GCCGGC	1 cut(s)	230
MseI	TTAA	3 cut(s)	158, 258, 270
MslI	CAYNNNNRTG	2 cut(s)	119, 239
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	98
MunI	CAATTG	1 cut(s)	286
MvaI	CCWGG	1 cut(s)	98
NaeI	GCCGGC	1 cut(s)	232
NgoMIV	GCCGGC	1 cut(s)	230
NlaIII	CATG	4 cut(s)	118, 124, 148, 199
NspI	RCATGY	1 cut(s)	148
OliI	CACNNNNGTG	1 cut(s)	239
PciI	ACATGT	1 cut(s)	144
PciSI	GCTCTTC	1 cut(s)	182
PdiI	GCCGGC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	225
PleI	GAGTC	1 cut(s)	100
PmaCI	CACGTG	1 cut(s)	237
PmlI	CACGTG	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	100
Ppu21I	YACGTR	1 cut(s)	237
PscI	ACATGT	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	96
PspCI	CACGTG	1 cut(s)	237
PspFI	CCCAGC	1 cut(s)	203
PspGI	CCWGG	1 cut(s)	96
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	2 cut(s)	119, 239
SapI	GCTCTTC	1 cut(s)	182
SaqAI	TTAA	3 cut(s)	158, 258, 270
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	98
SetI	ASST	4 cut(s)	45, 66, 219, 239
SfaNI	GCATC	1 cut(s)	234
SmiMI	CAYNNNNRTG	2 cut(s)	119, 239
Sse9I	AATT	3 cut(s)	251, 267, 286
SsiI	CCGC	2 cut(s)	46, 173
StyD4I	CCNGG	1 cut(s)	96
TaiI	ACGT	2 cut(s)	45, 239
TasI	AATT	3 cut(s)	251, 267, 286
TatI	WGTACW	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	225
Tru1I	TTAA	3 cut(s)	158, 258, 270
Tru9I	TTAA	3 cut(s)	158, 258, 270
TspDTI	ATGAA	1 cut(s)	212
XceI	RCATGY	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.