Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009854

Physical Location & Seq

Genomic Coordinates Reverse (-)

11444294 .. 11446331

Gene Structure 2038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G109300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCGACCGAAACGCCTCCGAATTTCTGGGGCGACATGCCAGAGGAGGACTACTACACCTCCCAAGGCGTGCGCAACACCAAATCATTCTTCCAGACTCCTAACGGCCAGATCTTCACCCAGAGCTTCTTGCCGTTGGATCAAACAGTCAAAGGCACCGTCTTCATGACCCACGGCTACGGATCCGACACCGGCTGGCTCTTCCAGAAAATATGCATGCACTACGCCACGTGGGGCTACGCCGTCTTCGCCGCCGATCTCCTCGGCCACGGGCGATCCGACGGCCTCCGCTGCTACCTTGGCGACATGGAGAAAGTTGCCGCCACGTCACTCTCCTTCTTCCTCCACGTGCGCCGCAACGAATTATACCTCCACCTCCCTGCCTTCCTCTTCGGCGAGTCCATGGGCGGCGCTGCCACCATGCTCATGTACTTCCAGTCCCCGCCCGACACTTGGACGGGCCTGATCTTCTCCGCGCCGCTCTTCGTCATCCCGGAGAACATGAAGCCCAGCAAGGTCCACCTGTTCCTGTACGGCCTCCTCTTCGGGATCGCCGACACATGGGCGGCAATGCCGGACAACAAGATGGTCGGAAAAGCGATCAAGGACCCCGCGAAGCTGAGGATCATAGCCTCGAATCCGAGGAGGTACACGGGCCCACCGAGGGTGGGGACCATGAGGGAGATCGCGAGGGTGTGCCAGTACATACAGGACAACTTCTCGCGCGTCACGACTCCGTTTTTAACAGTGCACGGGACGGCGGACGGGGTGACGTGTCCGTCGTCGTCGAAGCTGTTGTACGAAAAGGCATCGAGTGTGGACAAGACCTTGAAGATTTACGATGGGATGTATCATTCCTTGATACAAGGGGAGCCCGATGAGAATGCGGAGATTGTGTTGAGGGATATGAGGGAGTGGATTGATGAGAGGGTTGAGAGGTATGGGCCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0003846 GO:0004620 GO:0004622 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005911 GO:0006629 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008374 GO:0009506 GO:0009636 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016298 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0030054 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0050896 GO:0052689 GO:0055044 GO:0071704 GO:0071944 GO:0090430 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

318

Amino Acids

35.79

Weight (kDa)

6.45

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52760
fragaria_vesca	FvH4_6g30610 FvH4_6g30610 FvH4_6g30610 FvH4_6g30610
malus_domestica	MD17G1201900.v1.1
prunus_persica	Prupe.5G109300_v2.0.a1
pyrus_communis	pycom17g20580 pycom17g20590 pycom17g20600 pycom17g20610
rosa_chinensis	RchiOBHm_Chr2g0137021
rosa_laevigata	RLG00000019597
rosa_multiflora	Rmu_sc0001374.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107770
rosa_rugosa	Rorug02G0337200
rosa_samantha	Rh2AG386300 Rh2BG393100 Rh2CG373600 Rh2DG409300
rosa_wichuraiana	Rw2G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	778
Acc16I	TGCGCA	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	155
AccBSI	CCGCTC	1 cut(s)	481
AccII	CGCG	5 cut(s)	476, 614, 689, 724, 726
AclWI	GGATC	6 cut(s)	147, 177, 190, 270, 557, 632
AcoI	YGGCCR	2 cut(s)	106, 265
AcsI	RAATTY	1 cut(s)	22
AcvI	CACGTG	2 cut(s)	231, 349
AfaI	GTAC	5 cut(s)	431, 533, 650, 704, 800
AfiI	CCNNNNNNNGG	4 cut(s)	453, 561, 664, 668
AflIII	ACRYGT	1 cut(s)	773
AgsI	TTSAA	1 cut(s)	832
AjiI	CACGTC	2 cut(s)	327, 774
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	3 cut(s)	126, 619, 793
AluI	AGCT	3 cut(s)	126, 619, 793
Alw21I	GWGCWC	1 cut(s)	753
Alw44I	GTGCAC	1 cut(s)	749
AlwI	GGATC	6 cut(s)	147, 177, 190, 270, 557, 632
AoxI	GGCC	7 cut(s)	106, 265, 283, 460, 535, 655, 944
ApaI	GGGCCC	2 cut(s)	659, 948
ApaLI	GTGCAC	1 cut(s)	749
ApeKI	GCWGC	2 cut(s)	291, 413
ApoI	RAATTY	1 cut(s)	22
ArsI	GACNNNNNNTTYG	2 cut(s)	144, 176
AspLEI	GCGC	5 cut(s)	75, 354, 413, 478, 726
AspS9I	GGNCC	8 cut(s)	460, 517, 607, 655, 656, 672, 944, 945
AsuC2I	CCSGG	1 cut(s)	494
AsuHPI	GGTGA	2 cut(s)	109, 781
AvaII	GGWCC	3 cut(s)	517, 607, 672
BaeGI	GKGCMC	3 cut(s)	659, 753, 948
BamHI	GGATCC	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	3 cut(s)	659, 876, 948
BarI	GAAGNNNNNNTAC	2 cut(s)	782, 814
BbrPI	CACGTG	2 cut(s)	231, 349
BbsI	GAAGAC	2 cut(s)	154, 238
Bbv12I	GWGCWC	1 cut(s)	753
BbvCI	CCTCAGC	1 cut(s)	620
BbvI	GCAGC	2 cut(s)	278, 400
BccI	CCATC	2 cut(s)	580, 836
BceAI	ACGGC	7 cut(s)	118, 121, 190, 227, 298, 550, 774
BcgI	CGANNNNNNTGC	2 cut(s)	866, 900
BcnI	CCSGG	1 cut(s)	494
BfoI	RGCGCY	1 cut(s)	414
BglII	AGATCT	1 cut(s)	111
BisI	GCNGC	8 cut(s)	252, 292, 321, 355, 409, 414, 479, 567
BlsI	GCNGC	8 cut(s)	253, 293, 322, 356, 410, 415, 480, 568
Bme1390I	CCNGG	1 cut(s)	494
Bme18I	GGWCC	3 cut(s)	517, 607, 672
BmgBI	CACGTC	2 cut(s)	327, 774
BmgT120I	GGNCC	8 cut(s)	460, 517, 607, 655, 656, 672, 944, 945
BmiI	GGNNCC	7 cut(s)	157, 184, 609, 657, 673, 873, 946
BmrFI	CCNGG	1 cut(s)	494
BmsI	GCATC	1 cut(s)	818
BpiI	GAAGAC	2 cut(s)	154, 238
Bpu10I	CCTNAGC	1 cut(s)	620
BpuMI	CCSGG	1 cut(s)	494
BsaAI	YACGTR	2 cut(s)	231, 349
BsaJI	CCNNGG	8 cut(s)	64, 172, 262, 268, 298, 402, 641, 662
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 881, 911
Bsc4I	CCNNNNNNNGG	4 cut(s)	453, 561, 664, 668
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	436, 700
Bse3DI	GCAATG	1 cut(s)	576
BseDI	CCNNGG	8 cut(s)	64, 172, 262, 268, 298, 402, 641, 662
BseGI	GGATG	2 cut(s)	489, 852
BseLI	CCNNNNNNNGG	4 cut(s)	453, 561, 664, 668
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	1 cut(s)	611
BseNI	ACTGG	2 cut(s)	436, 700
BseRI	GAGGAG	4 cut(s)	59, 251, 530, 658
BseSI	GKGCMC	3 cut(s)	659, 753, 948
BseXI	GCAGC	2 cut(s)	278, 400
BseYI	CCCAGC	1 cut(s)	509
Bsh1236I	CGCG	5 cut(s)	476, 614, 689, 724, 726
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	7 cut(s)	108, 267, 285, 462, 537, 657, 946
BshNI	GGYRCC	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	753
BsiSI	CCGG	3 cut(s)	192, 494, 575
BslFI	GGGAC	3 cut(s)	424, 685, 769
BslI	CCNNNNNNNGG	4 cut(s)	453, 561, 664, 668
BsmFI	GGGAC	3 cut(s)	424, 685, 769
BsmI	GAATGC	1 cut(s)	889
BsnI	GGCC	7 cut(s)	108, 267, 285, 462, 537, 657, 946
Bsp120I	GGGCCC	2 cut(s)	655, 944
Bsp1286I	GDGCHC	4 cut(s)	659, 753, 876, 948
Bsp19I	CCATGG	1 cut(s)	402
Bsp68I	TCGCGA	1 cut(s)	689
BspANI	GGCC	7 cut(s)	108, 267, 285, 462, 537, 657, 946
BspCNI	CTCAG	1 cut(s)	612
BspFNI	CGCG	5 cut(s)	476, 614, 689, 724, 726
BspHI	TCATGA	1 cut(s)	165
BspLI	GGNNCC	7 cut(s)	157, 184, 609, 657, 673, 873, 946
BspPI	GGATC	6 cut(s)	147, 177, 190, 270, 557, 632
BspQI	GCTCTTC	2 cut(s)	206, 488
BspT107I	GGYRCC	1 cut(s)	155
BsrBI	CCGCTC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	576
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	436, 700
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	8 cut(s)	64, 172, 262, 268, 298, 402, 641, 662
BssT1I	CCWWGG	3 cut(s)	64, 298, 402
Bst4CI	ACNGT	3 cut(s)	148, 160, 748
Bst6I	CTCTTC	4 cut(s)	206, 395, 488, 548
BstBAI	YACGTR	2 cut(s)	231, 349
BstC8I	GCNNGC	3 cut(s)	71, 197, 218
BstDEI	CTNAG	1 cut(s)	620
BstDSI	CCRYGG	3 cut(s)	172, 268, 402
BstF5I	GGATG	2 cut(s)	489, 852
BstFNI	CGCG	5 cut(s)	476, 614, 689, 724, 726
BstH2I	RGCGCY	1 cut(s)	414
BstHHI	GCGC	5 cut(s)	75, 354, 413, 478, 726
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 291, 300
BstNSI	RCATGY	2 cut(s)	40, 220
BstSCI	CCNGG	1 cut(s)	492
BstSLI	GKGCMC	3 cut(s)	659, 753, 948
BstUI	CGCG	5 cut(s)	476, 614, 689, 724, 726
BstV1I	GCAGC	2 cut(s)	278, 400
BstV2I	GAAGAC	2 cut(s)	154, 238
BstX2I	RGATCY	2 cut(s)	111, 182
BstYI	RGATCY	2 cut(s)	111, 182
BsuRI	GGCC	7 cut(s)	108, 267, 285, 462, 537, 657, 946
BtgI	CCRYGG	3 cut(s)	172, 268, 402
BtrI	CACGTC	2 cut(s)	327, 774
BtsCI	GGATG	2 cut(s)	489, 852
BtsIMutI	CAGTG	1 cut(s)	753
BtuMI	TCGCGA	1 cut(s)	689
Cac8I	GCNNGC	3 cut(s)	71, 197, 218
CciI	TCATGA	1 cut(s)	165
CfoI	GCGC	5 cut(s)	75, 354, 413, 478, 726
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	8 cut(s)	460, 517, 607, 655, 656, 672, 944, 945
CseI	GACGC	1 cut(s)	715
Csp6I	GTAC	5 cut(s)	430, 532, 649, 703, 799
CviQI	GTAC	5 cut(s)	430, 532, 649, 703, 799
DdeI	CTNAG	1 cut(s)	620
DrdI	GACNNNNNNGTC	1 cut(s)	778
DseDI	GACNNNNNNGTC	1 cut(s)	778
EaeI	YGGCCR	2 cut(s)	106, 265
Eam1104I	CTCTTC	4 cut(s)	206, 395, 488, 548
EarI	CTCTTC	4 cut(s)	206, 395, 488, 548
EciI	GGCGGA	1 cut(s)	776
Eco130I	CCWWGG	3 cut(s)	64, 298, 402
Eco24I	GRGCYC	3 cut(s)	659, 876, 948
Eco47I	GGWCC	3 cut(s)	517, 607, 672
Eco72I	CACGTG	2 cut(s)	231, 349
EcoO109I	RGGNCCY	1 cut(s)	607
EcoT14I	CCWWGG	3 cut(s)	64, 298, 402
EcoT22I	ATGCAT	1 cut(s)	218
EcoT38I	GRGCYC	3 cut(s)	659, 876, 948
ErhI	CCWWGG	3 cut(s)	64, 298, 402
FaqI	GGGAC	3 cut(s)	424, 685, 769
FauI	CCCGC	2 cut(s)	450, 619
Fnu4HI	GCNGC	8 cut(s)	252, 292, 321, 355, 409, 414, 479, 567
FokI	GGATG	2 cut(s)	476, 859
FriOI	GRGCYC	3 cut(s)	659, 876, 948
Fsp4HI	GCNGC	8 cut(s)	252, 292, 321, 355, 409, 414, 479, 567
FspI	TGCGCA	1 cut(s)	74
GlaI	GCGC	5 cut(s)	74, 353, 412, 477, 725
GluI	GCNGC	8 cut(s)	252, 292, 321, 355, 409, 414, 479, 567
GsaI	CCCAGC	1 cut(s)	513
HaeII	RGCGCY	1 cut(s)	414
HaeIII	GGCC	7 cut(s)	108, 267, 285, 462, 537, 657, 946
HapII	CCGG	3 cut(s)	192, 494, 575
HgaI	GACGC	1 cut(s)	715
HhaI	GCGC	5 cut(s)	75, 354, 413, 478, 726
Hin6I	GCGC	5 cut(s)	73, 352, 411, 476, 724
HinP1I	GCGC	5 cut(s)	73, 352, 411, 476, 724
HinfI	GANTC	4 cut(s)	97, 398, 637, 733
HpaII	CCGG	3 cut(s)	192, 494, 575
HphI	GGTGA	2 cut(s)	109, 781
Hpy166II	GTNNAC	4 cut(s)	520, 651, 751, 820
Hpy188I	TCNGA	5 cut(s)	21, 187, 280, 593, 642
Hpy188III	TCNNGA	6 cut(s)	94, 166, 205, 547, 688, 730
Hpy8I	GTNNAC	4 cut(s)	520, 651, 751, 820
Hpy99I	CGWCG	4 cut(s)	284, 784, 787, 790
HpyAV	CCTTC	2 cut(s)	346, 394
HpyCH4III	ACNGT	3 cut(s)	148, 160, 748
HpyCH4IV	ACGT	4 cut(s)	230, 326, 348, 773
HpyCH4V	TGCA	3 cut(s)	216, 220, 751
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 291, 300
HpyF3I	CTNAG	1 cut(s)	620
HpySE526I	ACGT	4 cut(s)	230, 326, 348, 773
HspAI	GCGC	5 cut(s)	73, 352, 411, 476, 724
LguI	GCTCTTC	2 cut(s)	206, 488
LmnI	GCTCC	1 cut(s)	871
Lsp1109I	GCAGC	2 cut(s)	278, 400
LweI	GCATC	1 cut(s)	818
MaeII	ACGT	4 cut(s)	230, 326, 348, 773
MaeIII	GTNAC	3 cut(s)	327, 727, 769
MbiI	CCGCTC	1 cut(s)	481
MflI	RGATCY	2 cut(s)	111, 182
MhlI	GDGCHC	4 cut(s)	659, 753, 876, 948
MluCI	AATT	2 cut(s)	22, 362
MlyI	GAGTC	3 cut(s)	91, 407, 727
MmeI	TCCRAC	4 cut(s)	117, 210, 303, 571
Mph1103I	ATGCAT	1 cut(s)	218
MseI	TTAA	1 cut(s)	743
MslI	CAYNNNNRTG	1 cut(s)	425
MspA1I	CMGCKG	1 cut(s)	291
MspI	CCGG	3 cut(s)	192, 494, 575
MspR9I	CCNGG	1 cut(s)	494
Mva1269I	GAATGC	1 cut(s)	889
MvnI	CGCG	5 cut(s)	476, 614, 689, 724, 726
MwoI	GCNNNNNNNGC	3 cut(s)	248, 291, 300
NciI	CCSGG	1 cut(s)	494
NcoI	CCATGG	1 cut(s)	402
NlaIV	GGNNCC	7 cut(s)	157, 184, 609, 657, 673, 873, 946
NmeAIII	GCCGAG	1 cut(s)	243
NmuCI	GTSAC	3 cut(s)	327, 727, 769
NruI	TCGCGA	1 cut(s)	689
NsbI	TGCGCA	1 cut(s)	74
NsiI	ATGCAT	1 cut(s)	218
NspI	RCATGY	2 cut(s)	40, 220
PaeI	GCATGC	1 cut(s)	220
PagI	TCATGA	1 cut(s)	165
PciSI	GCTCTTC	2 cut(s)	206, 488
PcsI	WCGNNNNNNNCGW	5 cut(s)	276, 552, 659, 728, 779
PctI	GAATGC	1 cut(s)	889
PfeI	GAWTC	1 cut(s)	637
PfoI	TCCNGGA	1 cut(s)	492
PkrI	GCNGC	8 cut(s)	253, 293, 322, 356, 410, 415, 480, 568
PleI	GAGTC	3 cut(s)	91, 406, 727
PmaCI	CACGTG	2 cut(s)	231, 349
PmlI	CACGTG	2 cut(s)	231, 349
PpsI	GAGTC	3 cut(s)	91, 406, 727
Ppu21I	YACGTR	2 cut(s)	231, 349
PpuMI	RGGWCCY	1 cut(s)	607
Psp5II	RGGWCCY	1 cut(s)	607
PspCI	CACGTG	2 cut(s)	231, 349
PspFI	CCCAGC	1 cut(s)	509
PspN4I	GGNNCC	7 cut(s)	157, 184, 609, 657, 673, 873, 946
PspOMI	GGGCCC	2 cut(s)	655, 944
PspPI	GGNCC	8 cut(s)	460, 517, 607, 655, 656, 672, 944, 945
PspPPI	RGGWCCY	1 cut(s)	607
PsuI	RGATCY	2 cut(s)	111, 182
RruI	TCGCGA	1 cut(s)	689
RsaI	GTAC	5 cut(s)	431, 533, 650, 704, 800
RsaNI	GTAC	5 cut(s)	430, 532, 649, 703, 799
RseI	CAYNNNNRTG	1 cut(s)	425
SapI	GCTCTTC	2 cut(s)	206, 488
SaqAI	TTAA	1 cut(s)	743
SatI	GCNGC	8 cut(s)	252, 292, 321, 355, 409, 414, 479, 567
Sau96I	GGNCC	8 cut(s)	460, 517, 607, 655, 656, 672, 944, 945
SchI	GAGTC	3 cut(s)	91, 407, 727
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	4 cut(s)	659, 753, 876, 948
SfaNI	GCATC	1 cut(s)	818
SinI	GGWCC	3 cut(s)	517, 607, 672
SmiMI	CAYNNNNRTG	1 cut(s)	425
SphI	GCATGC	1 cut(s)	220
Sse9I	AATT	2 cut(s)	22, 362
StyD4I	CCNGG	1 cut(s)	492
StyI	CCWWGG	3 cut(s)	64, 298, 402
TaaI	ACNGT	3 cut(s)	148, 160, 748
TaiI	ACGT	4 cut(s)	233, 329, 351, 776
TaqI	TCGA	3 cut(s)	635, 788, 812
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	2 cut(s)	22, 362
TatI	WGTACW	2 cut(s)	429, 702
TauI	GCSGC	6 cut(s)	254, 323, 357, 411, 481, 569
TfiI	GAWTC	1 cut(s)	637
Tru1I	TTAA	1 cut(s)	743
Tru9I	TTAA	1 cut(s)	743
TscAI	CASTG	1 cut(s)	753
TseFI	GTSAC	3 cut(s)	327, 727, 769
TseI	GCWGC	2 cut(s)	291, 413
Tsp45I	GTSAC	3 cut(s)	327, 727, 769
TspDTI	ATGAA	2 cut(s)	154, 518
TspGWI	ACGGA	3 cut(s)	195, 726, 768
TspRI	CASTG	1 cut(s)	753
VneI	GTGCAC	1 cut(s)	749
VpaK11BI	GGWCC	3 cut(s)	517, 607, 672
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	2 cut(s)	40, 220
Zsp2I	ATGCAT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.