Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009854

Physical Location & Seq

Genomic Coordinates Reverse (-)

19034011 .. 19034489

Gene Structure 479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g20600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGACTATGTAGAATTCTCTGTACTGTCTCATGGAAGAGCTTCCTTGCCAGAGGAATATCGTCTTTTGCAAGTTTTGCAGAATGTAATGGAAGGTTTTGTCCATGTGAACAGCGACGATGTTTTTGACAATTTCTCGGGGATGATGGCGTCGTTTTTTACAGTACATGGGACGGCGAACAGGGTGACGTACACAACGTCGTCACAGCTGCTGTACGAGAAGGGATTAAGCGTGGACAAGACTTTGAAGATTTACGATGGAATGTACCATTCTTTGGTACAAGGGGAGCCGGGCGAGAACGCGGATATTGTGTTGAGGGATATGAGGGAGTGGATTGATGAGAGGGTGGCGAGGTATGGGAGCAAAGCAAAGGGCTTGGAGGAGGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0003846 GO:0004620 GO:0004622 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005911 GO:0006629 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008374 GO:0009506 GO:0009636 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016298 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0030054 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0050896 GO:0052689 GO:0055044 GO:0071704 GO:0071944 GO:0090430 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

131

Amino Acids

14.82

Weight (kDa)

4.79

Isoelectric Point (pI)

21.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52760
fragaria_vesca	FvH4_6g30610 FvH4_6g30610 FvH4_6g30610 FvH4_6g30610
malus_domestica	MD17G1201900.v1.1
prunus_persica	Prupe.5G109300_v2.0.a1
pyrus_communis	pycom17g20580 pycom17g20590 pycom17g20600 pycom17g20610
rosa_chinensis	RchiOBHm_Chr2g0137021
rosa_laevigata	RLG00000019597
rosa_multiflora	Rmu_sc0001374.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107770
rosa_rugosa	Rorug02G0337200
rosa_samantha	Rh2AG386300 Rh2BG393100 Rh2CG373600 Rh2DG409300
rosa_wichuraiana	Rw2G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	274
AccII	CGCG	1 cut(s)	302
AciI	CCGC	1 cut(s)	302
AcsI	RAATTY	2 cut(s)	14, 387
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	6 cut(s)	24, 165, 191, 215, 266, 279
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	1 cut(s)	247
AluBI	AGCT	2 cut(s)	41, 208
AluI	AGCT	2 cut(s)	41, 208
Alw26I	GTCTC	1 cut(s)	33
AlwNI	CAGNNNCTG	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	208
ApoI	RAATTY	2 cut(s)	14, 387
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
Asp700I	GAANNNNTTC	1 cut(s)	40
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	195
BccI	CCATC	2 cut(s)	139, 251
BceAI	ACGGC	1 cut(s)	189
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	33
BisI	GCNGC	1 cut(s)	209
BlsI	GCNGC	1 cut(s)	210
Bme1390I	CCNGG	1 cut(s)	291
BmeT110I	CYCGRG	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	291
BpuMI	CCSGG	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	302
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	184
BsoBI	CYCGRG	1 cut(s)	136
BspACI	CCGC	1 cut(s)	302
BspFNI	CGCG	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	288
BspQI	GCTCTTC	1 cut(s)	31
BssNI	GRCGYC	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	27, 163
Bst6I	CTCTTC	1 cut(s)	31
BstACI	GRCGYC	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	147
BstFNI	CGCG	1 cut(s)	302
BstMAI	GTCTC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	289
BstUI	CGCG	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	147
CaiI	CAGNNNCTG	1 cut(s)	211
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	6 cut(s)	23, 164, 190, 214, 265, 278
CviAII	CATG	3 cut(s)	32, 104, 167
CviJI	RGCY	4 cut(s)	41, 208, 289, 375
CviKI_1	RGCY	4 cut(s)	41, 208, 289, 375
CviQI	GTAC	6 cut(s)	23, 164, 190, 214, 265, 278
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
Eco88I	CYCGRG	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	14
FaeI	CATG	3 cut(s)	35, 107, 170
FaiI	YATR	6 cut(s)	9, 33, 105, 168, 323, 357
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	3 cut(s)	31, 103, 166
Fnu4HI	GCNGC	1 cut(s)	209
FokI	GGATG	1 cut(s)	154
Fsp4HI	GCNGC	1 cut(s)	209
GluI	GCNGC	1 cut(s)	209
HapII	CCGG	1 cut(s)	290
HgaI	GACGC	1 cut(s)	138
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	35, 107, 170
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	3 cut(s)	109, 192, 235
Hpy8I	GTNNAC	3 cut(s)	109, 192, 235
Hpy99I	CGWCG	3 cut(s)	119, 154, 202
HpyAV	CCTTC	2 cut(s)	86, 214
HpyCH4III	ACNGT	2 cut(s)	27, 163
HpyCH4IV	ACGT	2 cut(s)	188, 197
HpyCH4V	TGCA	2 cut(s)	70, 79
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpySE526I	ACGT	2 cut(s)	188, 197
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	3 cut(s)	35, 107, 170
LguI	GCTCTTC	1 cut(s)	31
LmnI	GCTCC	2 cut(s)	286, 360
LpnPI	CCDG	3 cut(s)	63, 166, 303
Lsp1109I	GCAGC	1 cut(s)	195
MaeII	ACGT	2 cut(s)	188, 197
MaeIII	GTNAC	2 cut(s)	184, 201
MboII	GAAGA	2 cut(s)	48, 259
MluCI	AATT	3 cut(s)	14, 130, 387
MnlI	CCTC	7 cut(s)	46, 309, 318, 336, 345, 373, 376
MroXI	GAANNNNTTC	1 cut(s)	40
MseI	TTAA	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	208
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	302
MwoI	GCNNNNNNNGC	1 cut(s)	76
NciI	CCSGG	1 cut(s)	291
NlaIII	CATG	3 cut(s)	35, 107, 170
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	2 cut(s)	184, 201
PciSI	GCTCTTC	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	1 cut(s)	194
PdmI	GAANNNNTTC	1 cut(s)	40
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	208
RsaI	GTAC	6 cut(s)	24, 165, 191, 215, 266, 279
RsaNI	GTAC	6 cut(s)	23, 164, 190, 214, 265, 278
SapI	GCTCTTC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	291
SetI	ASST	6 cut(s)	43, 97, 191, 200, 210, 356
Sse9I	AATT	3 cut(s)	14, 130, 387
SsiI	CCGC	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	2 cut(s)	27, 163
TaiI	ACGT	2 cut(s)	191, 200
TasI	AATT	3 cut(s)	14, 130, 387
TatI	WGTACW	2 cut(s)	22, 163
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TseFI	GTSAC	2 cut(s)	184, 201
TseI	GCWGC	1 cut(s)	208
Tsp45I	GTSAC	2 cut(s)	184, 201
Van91I	CCANNNNNTGG	1 cut(s)	274
XapI	RAATTY	2 cut(s)	14, 387
XmnI	GAANNNNTTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.