Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0018060

Physical Location & Seq

Genomic Coordinates Reverse (-)

26947141 .. 26947611

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g34110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAAGGTGTGCTGCAATTCTACATAAACGTTGAAAAGGAAGAAGCGAAGTTTGAGAAACTCTGCAATCTCTACGATACCTTGTGCATCAATTCCCAGAGTGTCATCTTTGTCAACACAAGGCTCAAAGCTGACTGGCTTACTCAACAGATGCGAAGCAAGGCATACATGGTCTCTGCTATCCATGGCGACACGGACCAGTTCAATCGTGACAGGATTATGCGAGAGTTCCATTTTGGCACTTCACCTGTTCTGATCACTAGTACTGATCTCTTGGCTTCTAAAATCAATGCGGAGGTCGTATCTCTAGCCATAAATTATGATTTGCCTACTCAACCAGAACAATACCGACGGATTGAAATGTTCGGAAGAAGTGGTGTTGCCATTAACTTTGTGACCAGGGATGAGAAGAGAGTGCTGCACGATATCGAGAAGGCTTGTAATATGGACATTAGGGAACTGCCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DEAD DUF4283 Helicase_C

Protein Analysis

157

Amino Acids

18.15

Weight (kDa)

5.64

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	17 - 117	3.1e-15	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018060)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34110
rosa_laevigata	RLG00000020077
rosa_multiflora	Rmu_co8505185.1_g000001 Rmu_sc0003475.1_g000011 Rmu_sc0003475.1_g000013
rosa_roxburghii	Rroxscaffold_2G00101340
rosa_rugosa	Rorug02G0386100
rosa_samantha	Rh2AG438500 Rh2CG425600 Rh2DG458600
rosa_wichuraiana	Rw2G035860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	293
AclI	AACGTT	1 cut(s)	30
AfaI	GTAC	1 cut(s)	265
AgsI	TTSAA	3 cut(s)	35, 205, 359
AhlI	ACTAGT	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	178
ApeKI	GCWGC	2 cut(s)	13, 418
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	237
AvaII	GGWCC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	405
BciT130I	CCWGG	1 cut(s)	400
BclI	TGATCA	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	178
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	2 cut(s)	261, 308
BisI	GCNGC	2 cut(s)	14, 419
BlsI	GCNGC	2 cut(s)	15, 420
BmcAI	AGTACT	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	400
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	2 cut(s)	96, 141
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	184, 399
Bse1I	ACTGG	2 cut(s)	140, 199
BseBI	CCWGG	1 cut(s)	400
BseDI	CCNNGG	2 cut(s)	184, 399
BseGI	GGATG	1 cut(s)	409
BseNI	ACTGG	2 cut(s)	140, 199
BseXI	GCAGC	1 cut(s)	405
BsgI	GTGCAG	1 cut(s)	404
BsmAI	GTCTC	1 cut(s)	178
Bso31I	GGTCTC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	255, 268
Bsp19I	CCATGG	1 cut(s)	184
BspACI	CCGC	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	140, 199
BssECI	CCNNGG	2 cut(s)	184, 399
BssMI	GATC	2 cut(s)	255, 268
BssT1I	CCWWGG	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	400
Bst6I	CTCTTC	1 cut(s)	404
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	2 cut(s)	258, 271
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	2 cut(s)	255, 268
BstNI	CCWGG	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	398
BstV1I	GCAGC	1 cut(s)	405
BtgI	CCRYGG	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	2 cut(s)	169, 185
CviJI	RGCY	6 cut(s)	124, 131, 139, 278, 311, 437
CviKI_1	RGCY	6 cut(s)	124, 131, 139, 278, 311, 437
CviQI	GTAC	1 cut(s)	264
DpnI	GATC	2 cut(s)	257, 270
DpnII	GATC	2 cut(s)	255, 268
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Eco130I	CCWWGG	1 cut(s)	184
Eco31I	GGTCTC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	398
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	2 cut(s)	172, 188
FaiI	YATR	8 cut(s)	26, 166, 170, 186, 221, 314, 321, 446
FatI	CATG	2 cut(s)	168, 184
FbaI	TGATCA	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	14, 419
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	2 cut(s)	14, 419
FspBI	CTAG	2 cut(s)	261, 308
GluI	GCNGC	2 cut(s)	14, 419
Hin1II	CATG	2 cut(s)	172, 188
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HphI	GGTGA	1 cut(s)	237
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	2 cut(s)	255, 368
Hpy188III	TCNNGA	2 cut(s)	209, 430
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	1 cut(s)	354
HpyAV	CCTTC	1 cut(s)	427
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	4 cut(s)	16, 66, 87, 421
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	172, 188
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	255, 268
LpnPI	CCDG	8 cut(s)	110, 121, 199, 212, 261, 351, 385, 412
Lsp1109I	GCAGC	1 cut(s)	405
LweI	GCATC	2 cut(s)	96, 141
MaeI	CTAG	2 cut(s)	261, 308
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	209, 394
MalI	GATC	2 cut(s)	257, 270
MboI	GATC	2 cut(s)	255, 268
MboII	GAAGA	3 cut(s)	53, 381, 421
MluCI	AATT	3 cut(s)	17, 91, 316
MnlI	CCTC	1 cut(s)	289
MseI	TTAA	2 cut(s)	387, 469
MspR9I	CCNGG	1 cut(s)	400
MvaI	CCWGG	1 cut(s)	400
NcoI	CCATGG	1 cut(s)	184
NdeII	GATC	2 cut(s)	255, 268
NlaIII	CATG	2 cut(s)	172, 188
NmuCI	GTSAC	2 cut(s)	209, 394
PkrI	GCNGC	2 cut(s)	15, 420
Psp1406I	AACGTT	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PspPI	GGNCC	1 cut(s)	196
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	387, 469
SatI	GCNGC	2 cut(s)	14, 419
Sau3AI	GATC	2 cut(s)	255, 268
Sau96I	GGNCC	1 cut(s)	196
ScaI	AGTACT	1 cut(s)	265
ScrFI	CCNGG	1 cut(s)	400
SetI	ASST	6 cut(s)	10, 33, 83, 133, 250, 300
SfaNI	GCATC	2 cut(s)	96, 141
SinI	GGWCC	1 cut(s)	196
SpeI	ACTAGT	1 cut(s)	260
Sse9I	AATT	3 cut(s)	17, 91, 316
SsiI	CCGC	1 cut(s)	293
SspMI	CTAG	2 cut(s)	261, 308
StyD4I	CCNGG	1 cut(s)	398
StyI	CCWWGG	1 cut(s)	184
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	429
TasI	AATT	3 cut(s)	17, 91, 316
TatI	WGTACW	1 cut(s)	263
Tru1I	TTAA	2 cut(s)	387, 469
Tru9I	TTAA	2 cut(s)	387, 469
TseFI	GTSAC	2 cut(s)	209, 394
TseI	GCWGC	2 cut(s)	13, 418
Tsp45I	GTSAC	2 cut(s)	209, 394
TspGWI	ACGGA	2 cut(s)	209, 367
VpaK11BI	GGWCC	1 cut(s)	196
XspI	CTAG	2 cut(s)	261, 308
ZrmI	AGTACT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.