Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0018060

Physical Location & Seq

Genomic Coordinates Forward (+)

58961520 .. 58968815

Gene Structure 7296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G035860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGGATTCCTTTTGTCTACAGGGCTGGAAGGTGTAATGCAATTTTACGTAAACGTTGAAAAGGAAGAAGGGAAGTTTGACAAACTCTGTGATCTCTACGATACCTTGTGCATCACTTCCCAGAGTGTCATCCTTCTCAAAGCGGAATGGCTTACTCAAAAGATGCGAAGCAAGGCACACATCGTCTCTGCTATCCATGGCGACATGGACCAGTTCAATCGTGACAGGATTATGCGTGAGTTCCATTCTGGCACTTGCCCTGTTCTGATCACCAGTACTGATATGATGGCTTCTAATATCAATGCGGAGCAAGTATCTCTAGCCATAAATTATGATTTGCCTACTCAACCAGAACAATACCGACGGATTGAAACCTTCGGAAGAACAGGTGTTGCCATTAACTTTGTGACCAGGTATGAGAAGAGAGTGCTGCACGATATGGAGAGGGTTTGTAATATGGACATCAGGGAGCTGCCATTTTCCACCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DEAD DUF4283 Helicase_C

Protein Analysis

163

Amino Acids

18.78

Weight (kDa)

5.57

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	25 - 122	8.5e-15	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018060)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34110
rosa_laevigata	RLG00000020077
rosa_multiflora	Rmu_co8505185.1_g000001 Rmu_sc0003475.1_g000011 Rmu_sc0003475.1_g000013
rosa_roxburghii	Rroxscaffold_2G00101340
rosa_rugosa	Rorug02G0386100
rosa_samantha	Rh2AG438500 Rh2CG425600 Rh2DG458600
rosa_wichuraiana	Rw2G035860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	17
AciI	CCGC	2 cut(s)	143, 305
AclI	AACGTT	1 cut(s)	54
AfaI	GTAC	1 cut(s)	277
AgsI	TTSAA	3 cut(s)	59, 217, 371
AjnI	CCWGG	1 cut(s)	410
AluBI	AGCT	2 cut(s)	472, 489
AluI	AGCT	2 cut(s)	472, 489
Alw26I	GTCTC	1 cut(s)	190
ApeKI	GCWGC	2 cut(s)	430, 472
AspS9I	GGNCC	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	208
BbvI	GCAGC	2 cut(s)	417, 459
BccI	CCATC	1 cut(s)	280
BciT130I	CCWGG	1 cut(s)	412
BclI	TGATCA	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	1 cut(s)	18
BisI	GCNGC	2 cut(s)	431, 473
BlsI	GCNGC	2 cut(s)	432, 474
BmcAI	AGTACT	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	412
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	412
BmsI	GCATC	2 cut(s)	120, 153
BsaAI	YACGTR	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	196
Bse1I	ACTGG	2 cut(s)	211, 273
BseBI	CCWGG	1 cut(s)	412
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	129
BseNI	ACTGG	2 cut(s)	211, 273
BseXI	GCAGC	2 cut(s)	417, 459
BsgI	GTGCAG	1 cut(s)	416
BsmAI	GTCTC	1 cut(s)	190
BsmBI	CGTCTC	1 cut(s)	190
Bsp143I	GATC	2 cut(s)	91, 267
Bsp19I	CCATGG	1 cut(s)	196
BspACI	CCGC	2 cut(s)	143, 305
BsrI	ACTGG	2 cut(s)	211, 273
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	2 cut(s)	91, 267
BssT1I	CCWWGG	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	412
Bst6I	CTCTTC	1 cut(s)	416
BstBAI	YACGTR	1 cut(s)	49
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	129
BstKTI	GATC	2 cut(s)	94, 270
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	2 cut(s)	91, 267
BstNI	CCWGG	1 cut(s)	412
BstSCI	CCNGG	1 cut(s)	410
BstSFI	CTRYAG	1 cut(s)	18
BstSNI	TACGTA	1 cut(s)	49
BstV1I	GCAGC	2 cut(s)	417, 459
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	208
CsiI	ACCWGGT	1 cut(s)	410
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	2 cut(s)	197, 205
CviJI	RGCY	6 cut(s)	25, 151, 290, 323, 472, 489
CviKI_1	RGCY	6 cut(s)	25, 151, 290, 323, 472, 489
CviQI	GTAC	1 cut(s)	276
DpnI	GATC	2 cut(s)	93, 269
DpnII	GATC	2 cut(s)	91, 267
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco105I	TACGTA	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	410
EcoT14I	CCWWGG	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	196
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	2 cut(s)	200, 208
FaiI	YATR	9 cut(s)	198, 206, 233, 284, 326, 333, 417, 440, 458
FatI	CATG	2 cut(s)	196, 204
FbaI	TGATCA	1 cut(s)	267
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	2 cut(s)	431, 473
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	2 cut(s)	431, 473
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	2 cut(s)	431, 473
Hin1II	CATG	2 cut(s)	200, 208
HinfI	GANTC	1 cut(s)	6
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	2 cut(s)	18, 52
Hpy188I	TCNGA	2 cut(s)	267, 380
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	2 cut(s)	18, 52
Hpy99I	CGWCG	1 cut(s)	366
HpyAV	CCTTC	4 cut(s)	23, 62, 143, 385
HpyCH4IV	ACGT	2 cut(s)	48, 54
HpyCH4V	TGCA	3 cut(s)	40, 111, 433
HpySE526I	ACGT	2 cut(s)	48, 54
Hsp92II	CATG	2 cut(s)	200, 208
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	2 cut(s)	91, 267
LmnI	GCTCC	2 cut(s)	307, 469
Lsp1109I	GCAGC	2 cut(s)	417, 459
LweI	GCATC	2 cut(s)	120, 153
MabI	ACCWGGT	1 cut(s)	410
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	2 cut(s)	48, 54
MaeIII	GTNAC	2 cut(s)	221, 406
MalI	GATC	2 cut(s)	93, 269
MboI	GATC	2 cut(s)	91, 267
MboII	GAAGA	3 cut(s)	77, 393, 433
MluCI	AATT	2 cut(s)	41, 328
MnlI	CCTC	1 cut(s)	438
MseI	TTAA	1 cut(s)	399
MspR9I	CCNGG	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	412
NcoI	CCATGG	1 cut(s)	196
NdeII	GATC	2 cut(s)	91, 267
NlaIII	CATG	2 cut(s)	200, 208
NmuCI	GTSAC	2 cut(s)	221, 406
PfeI	GAWTC	1 cut(s)	6
PkrI	GCNGC	2 cut(s)	432, 474
Ppu21I	YACGTR	1 cut(s)	49
Psp1406I	AACGTT	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	410
PspPI	GGNCC	1 cut(s)	208
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	2 cut(s)	431, 473
Sau3AI	GATC	2 cut(s)	91, 267
Sau96I	GGNCC	1 cut(s)	208
ScaI	AGTACT	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	412
SetI	ASST	9 cut(s)	34, 51, 57, 107, 377, 391, 416, 474, 491
SexAI	ACCWGGT	1 cut(s)	410
SfaNI	GCATC	2 cut(s)	120, 153
SfcI	CTRYAG	1 cut(s)	18
SinI	GGWCC	1 cut(s)	208
SnaBI	TACGTA	1 cut(s)	49
Sse9I	AATT	2 cut(s)	41, 328
SsiI	CCGC	2 cut(s)	143, 305
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	410
StyI	CCWWGG	1 cut(s)	196
TaiI	ACGT	2 cut(s)	51, 57
TasI	AATT	2 cut(s)	41, 328
TatI	WGTACW	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	6
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TseFI	GTSAC	2 cut(s)	221, 406
TseI	GCWGC	2 cut(s)	430, 472
Tsp45I	GTSAC	2 cut(s)	221, 406
TspGWI	ACGGA	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	17
XspI	CTAG	1 cut(s)	320
ZrmI	AGTACT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.