Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018060

Physical Location & Seq

Genomic Coordinates Reverse (-)

23323222 .. 23323866

Gene Structure 645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGAATGTCTCAGAGAAGCTATGGCTCCACGCCTTTACCAATTACCACGTCACCATGAAGACAAATCTCGATGGCTTCTGGACTAAGGGTGAAATAAGTATTGGAAGCCAAATTTGGGGAGTTATTCTTTATTTATGTTACTTGGGATTCCTTTTGTCTACAGGAATGGAAGGTGTAATGCAATTTTACGTAAACGTTGAAAAGGAAGAAGGGAAGTTTGACAAACTCTGTGATCTCTACGATACCTTGTGCATCACTTCCCAGAGTGTCATCGTTGTTAATACAAGGCTCAAAGCGGAATGGCTTACTCAAAAGATGCGAAGCGAGGCACACATCGTCTCTGCTATCCATGGCGACATGGACCAGTTCAATCGTGACAGGATTATGCGTGAGTTCCATTCTGGCACTTGCCCTGTTCTGATCACCAGTACCGATATGATGGCTTCTAATATCAATGCAGAGCAAGTATCTCTAGCCATAAATTATGATTTGCCTACTCAACCAGAACAATACCGACGGATTGAAACGTTCGGAAGAACAGGTGTTGCCATTAACTTTGTGACCAGGGATGAGAAGAGAGTGCTGCACGATATCGAGAGGGTTTGTAATATGGACATCAGGGAGCTGCCATTTTCCACCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DEAD DUF4283 Helicase_C

Protein Analysis

214

Amino Acids

24.67

Weight (kDa)

5.52

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	72 - 173	2.6e-16	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018060)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34110
rosa_laevigata	RLG00000020077
rosa_multiflora	Rmu_co8505185.1_g000001 Rmu_sc0003475.1_g000011 Rmu_sc0003475.1_g000013
rosa_roxburghii	Rroxscaffold_2G00101340
rosa_rugosa	Rorug02G0386100
rosa_samantha	Rh2AG438500 Rh2CG425600 Rh2DG458600
rosa_wichuraiana	Rw2G035860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	158
AciI	CCGC	1 cut(s)	296
AclI	AACGTT	2 cut(s)	195, 527
AcsI	RAATTY	1 cut(s)	111
AfaI	GTAC	1 cut(s)	430
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	3 cut(s)	200, 370, 524
AjiI	CACGTC	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	563
AjuI	GAANNNNNNNTTGG	4 cut(s)	84, 97, 116, 129
AluBI	AGCT	3 cut(s)	19, 625, 642
AluI	AGCT	3 cut(s)	19, 625, 642
Alw26I	GTCTC	2 cut(s)	13, 343
ApeKI	GCWGC	2 cut(s)	583, 625
ApoI	RAATTY	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	3 cut(s)	43, 101, 415
AvaII	GGWCC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	570, 612
BccI	CCATC	2 cut(s)	65, 433
BciT130I	CCWGG	1 cut(s)	565
BclI	TGATCA	1 cut(s)	420
BcoDI	GTCTC	2 cut(s)	13, 343
BfaI	CTAG	1 cut(s)	473
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	2 cut(s)	584, 626
BlsI	GCNGC	2 cut(s)	585, 627
Bme1390I	CCNGG	1 cut(s)	565
Bme18I	GGWCC	1 cut(s)	361
BmgBI	CACGTC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	565
BmsI	GCATC	2 cut(s)	261, 306
BpiI	GAAGAC	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	190
BsaJI	CCNNGG	2 cut(s)	349, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	364, 426
BseBI	CCWGG	1 cut(s)	565
BseDI	CCNNGG	2 cut(s)	349, 564
BseGI	GGATG	1 cut(s)	574
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	2 cut(s)	364, 426
BseXI	GCAGC	2 cut(s)	570, 612
BsgI	GTGCAG	1 cut(s)	569
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	2 cut(s)	13, 343
BsmBI	CGTCTC	1 cut(s)	343
Bsp143I	GATC	2 cut(s)	232, 420
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	1 cut(s)	296
BspCNI	CTCAG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	26
BsrI	ACTGG	2 cut(s)	364, 426
BssECI	CCNNGG	2 cut(s)	349, 564
BssMI	GATC	2 cut(s)	232, 420
BssT1I	CCWWGG	1 cut(s)	349
Bst2UI	CCWGG	1 cut(s)	565
Bst6I	CTCTTC	1 cut(s)	569
BstBAI	YACGTR	1 cut(s)	190
BstDEI	CTNAG	2 cut(s)	10, 84
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	1 cut(s)	574
BstKTI	GATC	2 cut(s)	235, 423
BstMAI	GTCTC	2 cut(s)	13, 343
BstMBI	GATC	2 cut(s)	232, 420
BstNI	CCWGG	1 cut(s)	565
BstSCI	CCNGG	1 cut(s)	563
BstSFI	CTRYAG	1 cut(s)	159
BstSNI	TACGTA	1 cut(s)	190
BstV1I	GCAGC	2 cut(s)	570, 612
BstV2I	GAAGAC	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	349
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	574
Cfr13I	GGNCC	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	429
CviAII	CATG	3 cut(s)	55, 350, 358
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	2 cut(s)	10, 84
DpnI	GATC	2 cut(s)	234, 422
DpnII	GATC	2 cut(s)	232, 420
Eam1104I	CTCTTC	1 cut(s)	569
EarI	CTCTTC	1 cut(s)	569
Eco105I	TACGTA	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	349
Eco32I	GATATC	1 cut(s)	592
Eco47I	GGWCC	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	563
EcoRV	GATATC	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	349
Esp3I	CGTCTC	1 cut(s)	343
FaeI	CATG	3 cut(s)	58, 353, 361
FatI	CATG	3 cut(s)	54, 349, 357
FbaI	TGATCA	1 cut(s)	420
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	2 cut(s)	584, 626
FokI	GGATG	1 cut(s)	581
Fsp4HI	GCNGC	2 cut(s)	584, 626
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	2 cut(s)	584, 626
Hin1II	CATG	3 cut(s)	58, 353, 361
HinfI	GANTC	1 cut(s)	147
HphI	GGTGA	3 cut(s)	43, 101, 415
Hpy166II	GTNNAC	2 cut(s)	159, 193
Hpy188I	TCNGA	3 cut(s)	13, 420, 533
Hpy188III	TCNNGA	4 cut(s)	68, 79, 374, 595
Hpy8I	GTNNAC	2 cut(s)	159, 193
Hpy99I	CGWCG	1 cut(s)	519
HpyAV	CCTTC	2 cut(s)	164, 203
HpyCH4IV	ACGT	4 cut(s)	48, 189, 195, 527
HpyCH4V	TGCA	4 cut(s)	181, 252, 458, 586
HpyF3I	CTNAG	2 cut(s)	10, 84
HpySE526I	ACGT	4 cut(s)	48, 189, 195, 527
Hsp92II	CATG	3 cut(s)	58, 353, 361
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	2 cut(s)	232, 420
LmnI	GCTCC	2 cut(s)	30, 622
Lsp1109I	GCAGC	2 cut(s)	570, 612
LweI	GCATC	2 cut(s)	261, 306
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	4 cut(s)	48, 189, 195, 527
MaeIII	GTNAC	4 cut(s)	49, 137, 374, 559
MalI	GATC	2 cut(s)	234, 422
MboI	GATC	2 cut(s)	232, 420
MboII	GAAGA	4 cut(s)	70, 218, 546, 586
MluCI	AATT	4 cut(s)	40, 111, 182, 481
MnlI	CCTC	2 cut(s)	319, 591
MseI	TTAA	2 cut(s)	279, 552
MspR9I	CCNGG	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	565
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	2 cut(s)	232, 420
NlaIII	CATG	3 cut(s)	58, 353, 361
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	3 cut(s)	49, 374, 559
PfeI	GAWTC	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	585, 627
Ppu21I	YACGTR	1 cut(s)	190
Psp1406I	AACGTT	2 cut(s)	195, 527
Psp6I	CCWGG	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	563
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	1 cut(s)	361
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
SaqAI	TTAA	2 cut(s)	279, 552
SatI	GCNGC	2 cut(s)	584, 626
Sau3AI	GATC	2 cut(s)	232, 420
Sau96I	GGNCC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	565
SfaNI	GCATC	2 cut(s)	261, 306
SfcI	CTRYAG	1 cut(s)	159
SinI	GGWCC	1 cut(s)	361
SnaBI	TACGTA	1 cut(s)	190
Sse9I	AATT	4 cut(s)	40, 111, 182, 481
SsiI	CCGC	1 cut(s)	296
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	1 cut(s)	563
StyI	CCWWGG	1 cut(s)	349
TaiI	ACGT	4 cut(s)	51, 192, 198, 530
TaqI	TCGA	2 cut(s)	69, 594
TasI	AATT	4 cut(s)	40, 111, 182, 481
TfiI	GAWTC	1 cut(s)	147
Tru1I	TTAA	2 cut(s)	279, 552
Tru9I	TTAA	2 cut(s)	279, 552
TseFI	GTSAC	3 cut(s)	49, 374, 559
TseI	GCWGC	2 cut(s)	583, 625
Tsp45I	GTSAC	3 cut(s)	49, 374, 559
TspDTI	ATGAA	2 cut(s)	17, 71
TspGWI	ACGGA	1 cut(s)	532
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	1 cut(s)	111
XmiI	GTMKAC	1 cut(s)	158
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.