Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003475.1

Orthogroup ID

OG0018060

Physical Location & Seq

Genomic Coordinates Reverse (-)

72049 .. 72378

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003475.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atgcgaagcaaggcacacatcgtctctgctatccatggcgacatggaccagttcaatcgtgacaggattatgcgtgagttccattctggcacttgcccggttctgatcaccagtactgatatgatggcttctaatatcaatgcggagcaagtatctctagccataaattatgatttgcctactcaaccagaacaataccgacggattgaaaccttcggaagaacaggtgttgccattaactttgtgaccagggatgagaagagagtgcttcacgatatcgagagggtttgtaatatggacatcagggagcttccattttccaccagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DEAD DUF4283 Helicase_C

Protein Analysis

109

Amino Acids

12.56

Weight (kDa)

6.05

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018060)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34110
rosa_laevigata	RLG00000020077
rosa_multiflora	Rmu_co8505185.1_g000001 Rmu_sc0003475.1_g000011 Rmu_sc0003475.1_g000013
rosa_roxburghii	Rroxscaffold_2G00101340
rosa_rugosa	Rorug02G0386100
rosa_samantha	Rh2AG438500 Rh2CG425600 Rh2DG458600
rosa_wichuraiana	Rw2G035860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	143
AfaI	GTAC	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	55, 209
AjnI	CCWGG	1 cut(s)	248
AluBI	AGCT	2 cut(s)	310, 327
AluI	AGCT	2 cut(s)	310, 327
Alw26I	GTCTC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	46
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	46
BccI	CCATC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	250
BclI	TGATCA	1 cut(s)	105
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	158
BmcAI	AGTACT	1 cut(s)	115
Bme1390I	CCNGG	2 cut(s)	98, 250
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmrFI	CCNGG	2 cut(s)	98, 250
BpuMI	CCSGG	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	34, 249
Bse1I	ACTGG	2 cut(s)	49, 111
BseBI	CCWGG	1 cut(s)	250
BseDI	CCNNGG	2 cut(s)	34, 249
BseGI	GGATG	1 cut(s)	259
BseNI	ACTGG	2 cut(s)	49, 111
BsiSI	CCGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	28
BsmBI	CGTCTC	1 cut(s)	28
Bsp143I	GATC	1 cut(s)	105
Bsp19I	CCATGG	1 cut(s)	34
BspACI	CCGC	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	49, 111
BssECI	CCNNGG	2 cut(s)	34, 249
BssMI	GATC	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	254
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	1 cut(s)	108
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	105
BstNI	CCWGG	1 cut(s)	250
BstSCI	CCNGG	2 cut(s)	96, 248
BtgI	CCRYGG	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	2 cut(s)	35, 43
CviJI	RGCY	4 cut(s)	128, 161, 310, 327
CviKI_1	RGCY	4 cut(s)	128, 161, 310, 327
CviQI	GTAC	1 cut(s)	114
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	34
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	248
EcoRV	GATATC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	34
Esp3I	CGTCTC	1 cut(s)	28
FaeI	CATG	2 cut(s)	38, 46
FaiI	YATR	7 cut(s)	36, 44, 71, 122, 164, 171, 296
FatI	CATG	2 cut(s)	34, 42
FbaI	TGATCA	1 cut(s)	105
FokI	GGATG	1 cut(s)	266
FspBI	CTAG	1 cut(s)	158
HapII	CCGG	1 cut(s)	98
Hin1II	CATG	2 cut(s)	38, 46
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	105, 218
Hpy188III	TCNNGA	3 cut(s)	59, 272, 280
Hpy99I	CGWCG	1 cut(s)	204
HpyAV	CCTTC	1 cut(s)	223
Hsp92II	CATG	2 cut(s)	38, 46
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	105
LmnI	GCTCC	2 cut(s)	145, 307
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	2 cut(s)	59, 244
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	2 cut(s)	231, 271
MluCI	AATT	1 cut(s)	166
MnlI	CCTC	1 cut(s)	276
MseI	TTAA	1 cut(s)	237
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	2 cut(s)	98, 250
MvaI	CCWGG	1 cut(s)	250
NciI	CCSGG	1 cut(s)	98
NcoI	CCATGG	1 cut(s)	34
NdeII	GATC	1 cut(s)	105
NlaIII	CATG	2 cut(s)	38, 46
NmuCI	GTSAC	2 cut(s)	59, 244
Psp6I	CCWGG	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	248
PspPI	GGNCC	1 cut(s)	46
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	105
Sau96I	GGNCC	1 cut(s)	46
ScaI	AGTACT	1 cut(s)	115
ScrFI	CCNGG	2 cut(s)	98, 250
SetI	ASST	4 cut(s)	215, 229, 312, 329
SinI	GGWCC	1 cut(s)	46
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	1 cut(s)	143
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	2 cut(s)	96, 248
StyI	CCWWGG	1 cut(s)	34
TaqI	TCGA	1 cut(s)	279
TasI	AATT	1 cut(s)	166
TatI	WGTACW	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseFI	GTSAC	2 cut(s)	59, 244
Tsp45I	GTSAC	2 cut(s)	59, 244
TspGWI	ACGGA	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	46
XspI	CTAG	1 cut(s)	158
ZrmI	AGTACT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.