Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0018060

Physical Location & Seq

Genomic Coordinates Forward (+)

57943112 .. 57943591

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG425600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAAGGTGTAATGCAATTTTACGTAAACGTTGAAAAGGAAGAAGGGAAGTTTGACAAACTCTGTGATCTCTACGATACCTTGTGCATCACTTCCCAGAGTGTCATCCTTGTTAATACAAGGCTCAAAGCGGAATGGCTTGCTCAAAACATGCAAAGCAAGGCACACATCGTCTCTGCTATCCATGGCGACATGGACCAGTTCAATCGTGACAGGATTATGCGTGAGTTCCATTCTGGCACTTGCCCTGTTCTGATCACCAGTACCGATATGATGGCTTCTAATATCAATGCGGAGCAAGTATCTCTAGCCATAAATTATGATTTGCCTACTCAACCTGAACAATACCGACGGATTGAAACCTTCGGAAGAACAGGTGTTGCCATTAACTTTGTGACCAGGGATGAGAAGAGAGTGCTGTACGATATCGAGAGGGTTTGTAATATGGACATCAGGGAGCTGCCTTTTTCCACCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DEAD DUF4283 Helicase_C

Protein Analysis

159

Amino Acids

18.35

Weight (kDa)

5.07

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	17 - 118	2.5e-16	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018060)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34110
rosa_laevigata	RLG00000020077
rosa_multiflora	Rmu_co8505185.1_g000001 Rmu_sc0003475.1_g000011 Rmu_sc0003475.1_g000013
rosa_roxburghii	Rroxscaffold_2G00101340
rosa_rugosa	Rorug02G0386100
rosa_samantha	Rh2AG438500 Rh2CG425600 Rh2DG458600
rosa_wichuraiana	Rw2G035860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	131, 293
AclI	AACGTT	1 cut(s)	30
AfaI	GTAC	2 cut(s)	265, 422
AgsI	TTSAA	3 cut(s)	35, 205, 359
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	2 cut(s)	460, 477
AluI	AGCT	2 cut(s)	460, 477
Alw26I	GTCTC	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	460
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	447
BccI	CCATC	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	400
BclI	TGATCA	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	308
BisI	GCNGC	1 cut(s)	461
BlsI	GCNGC	1 cut(s)	462
Bme1390I	CCNGG	1 cut(s)	400
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	1 cut(s)	96
BsaAI	YACGTR	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	184, 399
Bse1I	ACTGG	2 cut(s)	199, 261
BseBI	CCWGG	1 cut(s)	400
BseDI	CCNNGG	2 cut(s)	184, 399
BseGI	GGATG	2 cut(s)	105, 409
BseNI	ACTGG	2 cut(s)	199, 261
BseXI	GCAGC	1 cut(s)	447
BsmAI	GTCTC	1 cut(s)	178
BsmBI	CGTCTC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	67, 255
Bsp19I	CCATGG	1 cut(s)	184
BspACI	CCGC	2 cut(s)	131, 293
BsrI	ACTGG	2 cut(s)	199, 261
BssECI	CCNNGG	2 cut(s)	184, 399
BssMI	GATC	2 cut(s)	67, 255
BssT1I	CCWWGG	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	400
Bst6I	CTCTTC	1 cut(s)	404
BstBAI	YACGTR	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	141
BstDSI	CCRYGG	1 cut(s)	184
BstF5I	GGATG	2 cut(s)	105, 409
BstKTI	GATC	2 cut(s)	70, 258
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	2 cut(s)	67, 255
BstNI	CCWGG	1 cut(s)	400
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	398
BstSNI	TACGTA	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	447
BtgI	CCRYGG	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	105, 409
Cac8I	GCNNGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	264, 421
CviAII	CATG	3 cut(s)	151, 185, 193
CviJI	RGCY	6 cut(s)	124, 139, 278, 311, 460, 477
CviKI_1	RGCY	6 cut(s)	124, 139, 278, 311, 460, 477
CviQI	GTAC	2 cut(s)	264, 421
DpnI	GATC	2 cut(s)	69, 257
DpnII	GATC	2 cut(s)	67, 255
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Eco105I	TACGTA	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	184
Eco32I	GATATC	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	398
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	3 cut(s)	154, 188, 196
FaiI	YATR	8 cut(s)	152, 186, 194, 221, 272, 314, 321, 446
FatI	CATG	3 cut(s)	150, 184, 192
FbaI	TGATCA	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	461
FokI	GGATG	2 cut(s)	92, 416
Fsp4HI	GCNGC	1 cut(s)	461
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	1 cut(s)	461
Hin1II	CATG	3 cut(s)	154, 188, 196
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	255, 368
Hpy188III	TCNNGA	2 cut(s)	209, 430
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	1 cut(s)	354
HpyAV	CCTTC	2 cut(s)	38, 373
HpyCH4IV	ACGT	2 cut(s)	24, 30
HpyCH4V	TGCA	3 cut(s)	16, 87, 154
HpySE526I	ACGT	2 cut(s)	24, 30
Hsp92II	CATG	3 cut(s)	154, 188, 196
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	67, 255
LmnI	GCTCC	2 cut(s)	295, 457
Lsp1109I	GCAGC	1 cut(s)	447
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	2 cut(s)	24, 30
MaeIII	GTNAC	2 cut(s)	209, 394
MalI	GATC	2 cut(s)	69, 257
MboI	GATC	2 cut(s)	67, 255
MboII	GAAGA	3 cut(s)	53, 381, 421
MluCI	AATT	2 cut(s)	17, 316
MnlI	CCTC	1 cut(s)	426
MseI	TTAA	2 cut(s)	114, 387
MspR9I	CCNGG	1 cut(s)	400
MvaI	CCWGG	1 cut(s)	400
NcoI	CCATGG	1 cut(s)	184
NdeII	GATC	2 cut(s)	67, 255
NlaIII	CATG	3 cut(s)	154, 188, 196
NmuCI	GTSAC	2 cut(s)	209, 394
NspI	RCATGY	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	462
Ppu21I	YACGTR	1 cut(s)	25
Psp1406I	AACGTT	1 cut(s)	30
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PspPI	GGNCC	1 cut(s)	196
RsaI	GTAC	2 cut(s)	265, 422
RsaNI	GTAC	2 cut(s)	264, 421
SaqAI	TTAA	2 cut(s)	114, 387
SatI	GCNGC	1 cut(s)	461
Sau3AI	GATC	2 cut(s)	67, 255
Sau96I	GGNCC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	400
SetI	ASST	9 cut(s)	10, 27, 33, 83, 340, 365, 379, 462, 479
SfaNI	GCATC	1 cut(s)	96
SinI	GGWCC	1 cut(s)	196
SnaBI	TACGTA	1 cut(s)	25
Sse9I	AATT	2 cut(s)	17, 316
SsiI	CCGC	2 cut(s)	131, 293
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	398
StyI	CCWWGG	1 cut(s)	184
TaiI	ACGT	2 cut(s)	27, 33
TaqI	TCGA	1 cut(s)	429
TasI	AATT	2 cut(s)	17, 316
Tru1I	TTAA	2 cut(s)	114, 387
Tru9I	TTAA	2 cut(s)	114, 387
TseFI	GTSAC	2 cut(s)	209, 394
TseI	GCWGC	1 cut(s)	460
Tsp45I	GTSAC	2 cut(s)	209, 394
TspGWI	ACGGA	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	196
XceI	RCATGY	1 cut(s)	154
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.