Rh2DG458600

Belongs to the DEAD box helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0018060
Physical Location & Seq
Forward (+)
66332722 .. 66333169
448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG458600.1

Sequence Viewer

Length: 351 bp
ATGCGAAGCAAGGCACACATCGTCTCTGCTATCCATGGCGACATGGACCAGTTCAATCGTGACAGGATTATGCGTGAGTTCCATTCTGGCACTTGCCCGGTTCTGATCACCAGTACTGATATGATGGCTTCTAATATCAATGCGGAGCAAGTATCTCTAGCCATAAATTATGATTTGCCTACTCAACCAGAACAATACCGACGGATTGAAACCTTCGGAAGAACAGGTGTTGCCATTAACTTTGTGACCAGGGATGAGAAGAGAGTGCTGCACGATATCGAGAGGGTTTGTAATATGGACATCAGGGAGCTTCCATTTTCCACCAGCAAAATTCTGATGAGATCATTTTAA

Protein Analysis

116

Amino Acids

13.43

Weight (kDa)

6.9

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Helicase_C PF00271 6 - 68 3.5e-13 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018060)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34110
rosa_laevigata RLG00000020077
rosa_multiflora Rmu_co8505185.1_g000001 Rmu_sc0003475.1_g000011 Rmu_sc0003475.1_g000013
rosa_roxburghii Rroxscaffold_2G00101340
rosa_rugosa Rorug02G0386100
rosa_samantha Rh2AG438500 Rh2CG425600 Rh2DG458600
rosa_wichuraiana Rw2G035860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 143
AcsI RAATTY 1 cut(s) 330
AfaI GTAC 1 cut(s) 115
AgsI TTSAA 2 cut(s) 55, 209
AjnI CCWGG 1 cut(s) 248
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
Alw26I GTCTC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 268
ApoI RAATTY 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 100
AvaII GGWCC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 255
BccI CCATC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 250
BclI TGATCA 1 cut(s) 105
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 1 cut(s) 158
BisI GCNGC 1 cut(s) 269
BlsI GCNGC 1 cut(s) 270
BmcAI AGTACT 1 cut(s) 115
Bme1390I CCNGG 2 cut(s) 98, 250
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 98, 250
BpuMI CCSGG 1 cut(s) 98
BsaJI CCNNGG 2 cut(s) 34, 249
Bse1I ACTGG 2 cut(s) 49, 111
BseBI CCWGG 1 cut(s) 250
BseDI CCNNGG 2 cut(s) 34, 249
BseGI GGATG 1 cut(s) 259
BseNI ACTGG 2 cut(s) 49, 111
BseXI GCAGC 1 cut(s) 255
BsgI GTGCAG 1 cut(s) 254
BsiSI CCGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 28
BsmBI CGTCTC 1 cut(s) 28
Bsp143I GATC 2 cut(s) 105, 341
Bsp19I CCATGG 1 cut(s) 34
BspACI CCGC 1 cut(s) 143
BsrI ACTGG 2 cut(s) 49, 111
BssECI CCNNGG 2 cut(s) 34, 249
BssMI GATC 2 cut(s) 105, 341
BssT1I CCWWGG 1 cut(s) 34
Bst2UI CCWGG 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 254
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 2 cut(s) 108, 344
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 2 cut(s) 105, 341
BstNI CCWGG 1 cut(s) 250
BstSCI CCNGG 2 cut(s) 96, 248
BstV1I GCAGC 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 114
CviAII CATG 2 cut(s) 35, 43
CviJI RGCY 3 cut(s) 128, 161, 310
CviKI_1 RGCY 3 cut(s) 128, 161, 310
CviQI GTAC 1 cut(s) 114
DpnI GATC 2 cut(s) 107, 343
DpnII GATC 2 cut(s) 105, 341
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Eco130I CCWWGG 1 cut(s) 34
Eco32I GATATC 1 cut(s) 277
Eco47I GGWCC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 248
EcoRV GATATC 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 34
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 2 cut(s) 38, 46
FaiI YATR 7 cut(s) 36, 44, 71, 122, 164, 171, 296
FatI CATG 2 cut(s) 34, 42
FbaI TGATCA 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 269
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 269
FspBI CTAG 1 cut(s) 158
GluI GCNGC 1 cut(s) 269
HapII CCGG 1 cut(s) 98
Hin1II CATG 2 cut(s) 38, 46
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 3 cut(s) 105, 218, 336
Hpy188III TCNNGA 2 cut(s) 59, 280
Hpy99I CGWCG 1 cut(s) 204
HpyAV CCTTC 1 cut(s) 223
HpyCH4V TGCA 1 cut(s) 271
Hsp92II CATG 2 cut(s) 38, 46
Ksp22I TGATCA 1 cut(s) 105
Kzo9I GATC 2 cut(s) 105, 341
LmnI GCTCC 2 cut(s) 145, 307
Lsp1109I GCAGC 1 cut(s) 255
MaeI CTAG 1 cut(s) 158
MaeIII GTNAC 2 cut(s) 59, 244
MalI GATC 2 cut(s) 107, 343
MboI GATC 2 cut(s) 105, 341
MboII GAAGA 2 cut(s) 231, 271
MluCI AATT 2 cut(s) 166, 330
MnlI CCTC 1 cut(s) 276
MseI TTAA 2 cut(s) 237, 349
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 2 cut(s) 98, 250
MvaI CCWGG 1 cut(s) 250
NciI CCSGG 1 cut(s) 98
NcoI CCATGG 1 cut(s) 34
NdeII GATC 2 cut(s) 105, 341
NlaIII CATG 2 cut(s) 38, 46
NmuCI GTSAC 2 cut(s) 59, 244
PkrI GCNGC 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 248
PspGI CCWGG 1 cut(s) 248
PspPI GGNCC 1 cut(s) 46
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SaqAI TTAA 2 cut(s) 237, 349
SatI GCNGC 1 cut(s) 269
Sau3AI GATC 2 cut(s) 105, 341
Sau96I GGNCC 1 cut(s) 46
ScaI AGTACT 1 cut(s) 115
ScrFI CCNGG 2 cut(s) 98, 250
SetI ASST 3 cut(s) 215, 229, 312
SinI GGWCC 1 cut(s) 46
Sse9I AATT 2 cut(s) 166, 330
SsiI CCGC 1 cut(s) 143
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 2 cut(s) 96, 248
StyI CCWWGG 1 cut(s) 34
TaqI TCGA 1 cut(s) 279
TasI AATT 2 cut(s) 166, 330
TatI WGTACW 1 cut(s) 113
Tru1I TTAA 2 cut(s) 237, 349
Tru9I TTAA 2 cut(s) 237, 349
TseFI GTSAC 2 cut(s) 59, 244
TseI GCWGC 1 cut(s) 268
Tsp45I GTSAC 2 cut(s) 59, 244
TspGWI ACGGA 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 46
XapI RAATTY 1 cut(s) 330
XspI CTAG 1 cut(s) 158
ZrmI AGTACT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.