FvH4_6g37030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014773
Physical Location & Seq
Forward (+)
29082517 .. 29084308
1792 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37030.t1

Sequence Viewer

Length: 402 bp
ATGGAGGCTGATGATGAGAAAAAACCACTCTATGCTTCTCCAACATCATCACCTCCAACACCTCCTTCACCACTTCCCATCAGCGTTGGACCCGGCAACCAAAAGTACCTATTCTCGCCGTCTCCATCTCCCTCGCCGCCTTTCTCCCCTCCCTCGAGCCACACGTCTGCCGAGAATCTGCTCCCTCTTCTCCTCCCTGAGAAGCTGCATCCTAGTCCTAAAATGCCATCGTCAACATTTTCCTTGGATTATAGTAGACCGCCACCGGATCATTTGGAGTCCAGGAGCTCCTGCCTTACTGACTTGTTAGAGTGGTTTATAGAGAGATGCTGCAACTGCTGTACCAAGTCTCCCTATCAACTAGAAAACAGATCCTCATCAGGAGCAGCACTCAAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.45

Weight (kDa)

5.87

Isoelectric Point (pI)

99.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014773)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37030
malus_domestica MD09G1164800.v1.1 MD17G1163400.v1.1
prunus_persica Prupe.3G022200_v2.0.a1 Prupe.3G022200_v2.0.a1
pyrus_communis pycom09g08200 pycom17g15620
rosa_chinensis RchiOBHm_Chr2g0149581
rosa_laevigata RLG00000020426
rosa_multiflora Rmu_sc0006867.1_g000022
rosa_roxburghii Rroxscaffold_2G00097950
rosa_rugosa Rorug02G0412600
rosa_samantha Rh2AG473100 Rh2BG485100 Rh2CG458900 Rh2DG494300
rosa_wichuraiana Rw2G038580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 256
AciI CCGC 2 cut(s) 137, 260
AclWI GGATC 2 cut(s) 276, 366
AfaI GTAC 2 cut(s) 107, 343
AflIII ACRYGT 1 cut(s) 162
AjiI CACGTC 1 cut(s) 165
AjnI CCWGG 1 cut(s) 281
AjuI GAANNNNNNNTTGG 2 cut(s) 49, 81
AluBI AGCT 2 cut(s) 205, 288
AluI AGCT 2 cut(s) 205, 288
Alw21I GWGCWC 1 cut(s) 290
Alw26I GTCTC 2 cut(s) 126, 354
AlwI GGATC 2 cut(s) 276, 366
Ama87I CYCGRG 1 cut(s) 154
ApeKI GCWGC 3 cut(s) 205, 330, 386
AspS9I GGNCC 1 cut(s) 89
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 2 cut(s) 42, 60
AvaI CYCGRG 1 cut(s) 154
AvaII GGWCC 1 cut(s) 89
BaeI ACNNNNGTAYC 2 cut(s) 325, 358
BanII GRGCYC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 290
BbvI GCAGC 3 cut(s) 192, 317, 398
BccI CCATC 3 cut(s) 86, 133, 235
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 283
BcnI CCSGG 1 cut(s) 93
BcoDI GTCTC 2 cut(s) 126, 354
BfaI CTAG 2 cut(s) 213, 362
BisI GCNGC 4 cut(s) 137, 206, 331, 387
BlsI GCNGC 4 cut(s) 138, 207, 332, 388
Bme1390I CCNGG 2 cut(s) 93, 283
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 154
BmgBI CACGTC 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 2 cut(s) 93, 283
BmsI GCATC 2 cut(s) 217, 317
BplI GAGNNNNNCTC 1 cut(s) 375
BpuMI CCSGG 1 cut(s) 93
BsaBI GATNNNNATC 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 265
BsaXI ACNNNNNCTCC 2 cut(s) 334, 364
Bse8I GATNNNNATC 1 cut(s) 376
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 1 cut(s) 208
BseJI GATNNNNATC 1 cut(s) 376
BseMII CTCAG 1 cut(s) 189
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 3 cut(s) 192, 317, 398
BsiHKAI GWGCWC 1 cut(s) 290
BsiHKCI CYCGRG 1 cut(s) 154
BsiSI CCGG 2 cut(s) 93, 266
BsmAI GTCTC 2 cut(s) 126, 354
BsmBI CGTCTC 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 290
Bsp143I GATC 2 cut(s) 268, 371
BspACI CCGC 2 cut(s) 137, 260
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 91
BspPI GGATC 2 cut(s) 276, 366
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 2 cut(s) 268, 371
BssT1I CCWWGG 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 208
BstKTI GATC 2 cut(s) 271, 374
BstMAI GTCTC 2 cut(s) 126, 354
BstMBI GATC 2 cut(s) 268, 371
BstMWI GCNNNNNNNGC 1 cut(s) 336
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 2 cut(s) 91, 281
BstV1I GCAGC 3 cut(s) 192, 317, 398
BstX2I RGATCY 1 cut(s) 371
BstYI RGATCY 1 cut(s) 371
BtrI CACGTC 1 cut(s) 165
BtsCI GGATG 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 89
Csp6I GTAC 2 cut(s) 106, 342
CviJI RGCY 4 cut(s) 8, 159, 205, 288
CviKI_1 RGCY 4 cut(s) 8, 159, 205, 288
CviQI GTAC 2 cut(s) 106, 342
DdeI CTNAG 1 cut(s) 198
DpnI GATC 2 cut(s) 270, 373
DpnII GATC 2 cut(s) 268, 371
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Ecl136II GAGCTC 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 290
Eco47I GGWCC 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 281
EcoT14I CCWWGG 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 126
FaiI YATR 3 cut(s) 33, 252, 320
FblI GTMKAC 1 cut(s) 256
Fnu4HI GCNGC 4 cut(s) 137, 206, 331, 387
FokI GGATG 1 cut(s) 195
FriOI GRGCYC 1 cut(s) 290
Fsp4HI GCNGC 4 cut(s) 137, 206, 331, 387
FspBI CTAG 2 cut(s) 213, 362
GluI GCNGC 4 cut(s) 137, 206, 331, 387
HapII CCGG 2 cut(s) 93, 266
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HinfI GANTC 2 cut(s) 175, 278
HpaII CCGG 2 cut(s) 93, 266
HphI GGTGA 2 cut(s) 42, 60
Hpy166II GTNNAC 2 cut(s) 234, 257
Hpy188III TCNNGA 1 cut(s) 381
Hpy8I GTNNAC 2 cut(s) 234, 257
HpyAV CCTTC 1 cut(s) 75
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 2 cut(s) 208, 333
HpyF10VI GCNNNNNNNGC 1 cut(s) 336
HpyF3I CTNAG 1 cut(s) 198
HpySE526I ACGT 1 cut(s) 164
Kzo9I GATC 2 cut(s) 268, 371
LmnI GCTCC 4 cut(s) 186, 285, 293, 383
LpnPI CCDG 7 cut(s) 106, 210, 268, 279, 295, 304, 366
Lsp1109I GCAGC 3 cut(s) 192, 317, 398
LweI GCATC 2 cut(s) 217, 317
MaeI CTAG 2 cut(s) 213, 362
MaeII ACGT 1 cut(s) 164
MalI GATC 2 cut(s) 270, 373
MboI GATC 2 cut(s) 268, 371
MboII GAAGA 1 cut(s) 179
MflI RGATCY 1 cut(s) 371
MhlI GDGCHC 1 cut(s) 290
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 3 cut(s) 65, 67, 80
MnlI CCTC 8 cut(s) 63, 72, 142, 159, 163, 195, 203, 385
MspI CCGG 2 cut(s) 93, 266
MspR9I CCNGG 2 cut(s) 93, 283
MvaI CCWGG 1 cut(s) 283
MwoI GCNNNNNNNGC 1 cut(s) 336
NciI CCSGG 1 cut(s) 93
NdeII GATC 2 cut(s) 268, 371
NlaIV GGNNCC 1 cut(s) 91
NmeAIII GCCGAG 1 cut(s) 196
PaeR7I CTCGAG 1 cut(s) 154
PcsI WCGNNNNNNNCGW 1 cut(s) 161
PfeI GAWTC 1 cut(s) 175
PfoI TCCNGGA 1 cut(s) 281
PkrI GCNGC 4 cut(s) 138, 207, 332, 388
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Psp124BI GAGCTC 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 91
PspPI GGNCC 1 cut(s) 89
PspXI VCTCGAGB 1 cut(s) 154
PsuI RGATCY 1 cut(s) 371
RsaI GTAC 2 cut(s) 107, 343
RsaNI GTAC 2 cut(s) 106, 342
SacI GAGCTC 1 cut(s) 290
SatI GCNGC 4 cut(s) 137, 206, 331, 387
Sau3AI GATC 2 cut(s) 268, 371
Sau96I GGNCC 1 cut(s) 89
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 2 cut(s) 93, 283
SduI GDGCHC 1 cut(s) 290
SetI ASST 6 cut(s) 55, 64, 111, 167, 207, 290
SfaNI GCATC 2 cut(s) 217, 317
Sfr274I CTCGAG 1 cut(s) 154
SinI GGWCC 1 cut(s) 89
SlaI CTCGAG 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
SsiI CCGC 2 cut(s) 137, 260
SspMI CTAG 2 cut(s) 213, 362
SstI GAGCTC 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 91, 281
StyI CCWWGG 1 cut(s) 243
TaiI ACGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 155
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 1 cut(s) 175
TseI GCWGC 3 cut(s) 205, 330, 386
VpaK11BI GGWCC 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 256
XspI CTAG 2 cut(s) 213, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.