Prupe.3G022200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014773
Physical Location & Seq
Reverse (-)
1655409 .. 1657264
1856 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G022200.2

Sequence Viewer

Length: 351 bp
ATGGAGGAGGATGATGAGAAAAAAGTTTATGCTTCTCCAACATCATCTCCTCCAACACCTCCCTCACCCCTCCCCATCAGTGTAGGACCTGGCAACCAAAAGTACATATTTTCGCCGTCTCCGTCCCCCTCTCCACCTTTCTCTCCGCCTCCGTCGAGCCACACGTCAGCTGAGAACCTCCCTCTTCTGCATCATGATCAGAAGCTCTCTAGCCCTCCAGTGCCATCTTCAGCATTCTCCTTGGATTATCGGCGGCCCCCGGAGGATTTGGATTCCAGGAGCTCATGCCTTGCAGACTTGTTAAAGTGGTTTATAGAAAGATGCTGCAACTGTGGTTCTAAGTCTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.56

Weight (kDa)

5.49

Isoelectric Point (pI)

107.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014773)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37030
malus_domestica MD09G1164800.v1.1 MD17G1163400.v1.1
prunus_persica Prupe.3G022200_v2.0.a1 Prupe.3G022200_v2.0.a1
pyrus_communis pycom09g08200 pycom17g15620
rosa_chinensis RchiOBHm_Chr2g0149581
rosa_laevigata RLG00000020426
rosa_multiflora Rmu_sc0006867.1_g000022
rosa_roxburghii Rroxscaffold_2G00097950
rosa_rugosa Rorug02G0412600
rosa_samantha Rh2AG473100 Rh2BG485100 Rh2CG458900 Rh2DG494300
rosa_wichuraiana Rw2G038580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 146, 253
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 1 cut(s) 104
AflIII ACRYGT 1 cut(s) 162
AjiI CACGTC 1 cut(s) 165
AjnI CCWGG 2 cut(s) 88, 275
AluBI AGCT 3 cut(s) 170, 205, 282
AluI AGCT 3 cut(s) 170, 205, 282
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 123
AoxI GGCC 1 cut(s) 254
ApeKI GCWGC 1 cut(s) 324
AspS9I GGNCC 2 cut(s) 86, 255
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 57
AvaII GGWCC 1 cut(s) 86
BanII GRGCYC 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 311
BccI CCATC 2 cut(s) 83, 232
BceAI ACGGC 1 cut(s) 100
BciT130I CCWGG 2 cut(s) 90, 277
BclI TGATCA 1 cut(s) 196
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 2 cut(s) 210, 349
BisI GCNGC 2 cut(s) 254, 325
BlsI GCNGC 2 cut(s) 255, 326
Bme1390I CCNGG 3 cut(s) 90, 260, 277
Bme18I GGWCC 1 cut(s) 86
BmgBI CACGTC 1 cut(s) 165
BmgT120I GGNCC 2 cut(s) 86, 255
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 3 cut(s) 90, 260, 277
BmsI GCATC 2 cut(s) 199, 311
BpiI GAAGAC 1 cut(s) 336
BpmI CTGGAG 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 240, 258
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bse1I ACTGG 1 cut(s) 218
BseBI CCWGG 2 cut(s) 90, 277
BseDI CCNNGG 2 cut(s) 240, 258
BseGI GGATG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 2 cut(s) 20, 39
BseXI GCAGC 1 cut(s) 311
BshFI GGCC 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 284
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 123
BsmBI CGTCTC 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 109
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 2 cut(s) 146, 253
BspANI GGCC 1 cut(s) 256
BspCNI CTCAG 1 cut(s) 163
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 257
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 240, 258
BssMI GATC 1 cut(s) 196
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 2 cut(s) 90, 277
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 171, 339
BstF5I GGATG 1 cut(s) 16
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 1 cut(s) 196
BstNI CCWGG 2 cut(s) 90, 277
BstSCI CCNGG 3 cut(s) 88, 258, 275
BstV1I GCAGC 1 cut(s) 311
BstV2I GAAGAC 1 cut(s) 336
BsuRI GGCC 1 cut(s) 256
BtrI CACGTC 1 cut(s) 165
BtsCI GGATG 1 cut(s) 16
BtsIMutI CAGTG 2 cut(s) 85, 225
CciI TCATGA 1 cut(s) 193
Cfr13I GGNCC 2 cut(s) 86, 255
Csp6I GTAC 1 cut(s) 103
CviAII CATG 2 cut(s) 194, 285
CviJI RGCY 6 cut(s) 159, 170, 205, 213, 256, 282
CviKI_1 RGCY 6 cut(s) 159, 170, 205, 213, 256, 282
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 171, 339
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
EciI GGCGGA 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 284
Eco47I GGWCC 1 cut(s) 86
Eco53kI GAGCTC 1 cut(s) 282
Eco57I CTGAAG 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 86
EcoRII CCWGG 2 cut(s) 88, 275
EcoT14I CCWWGG 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 2 cut(s) 197, 288
FaiI YATR 5 cut(s) 30, 107, 195, 286, 314
FaqI GGGAC 1 cut(s) 109
FatI CATG 2 cut(s) 193, 284
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 254, 325
FokI GGATG 1 cut(s) 23
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 254, 325
FspBI CTAG 2 cut(s) 210, 349
GluI GCNGC 2 cut(s) 254, 325
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 256
HapII CCGG 1 cut(s) 260
Hin1II CATG 2 cut(s) 197, 288
HinfI GANTC 1 cut(s) 272
HpaII CCGG 1 cut(s) 260
HphI GGTGA 1 cut(s) 57
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 1 cut(s) 194
Hpy99I CGWCG 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 3 cut(s) 190, 293, 327
HpyF3I CTNAG 2 cut(s) 171, 339
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 2 cut(s) 197, 288
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 279
LpnPI CCDG 6 cut(s) 75, 102, 231, 262, 273, 289
Lsp1109I GCAGC 1 cut(s) 311
LweI GCATC 2 cut(s) 199, 311
MaeI CTAG 2 cut(s) 210, 349
MaeII ACGT 1 cut(s) 164
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 3 cut(s) 176, 219, 336
MhlI GDGCHC 1 cut(s) 284
MmeI TCCRAC 2 cut(s) 62, 77
MseI TTAA 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 3 cut(s) 90, 260, 277
Mva1269I GAATGC 1 cut(s) 233
MvaI CCWGG 2 cut(s) 90, 277
NciI CCSGG 1 cut(s) 260
NdeII GATC 1 cut(s) 196
NlaIII CATG 2 cut(s) 197, 288
NlaIV GGNNCC 1 cut(s) 257
PagI TCATGA 1 cut(s) 193
PcsI WCGNNNNNNNCGW 2 cut(s) 119, 161
PctI GAATGC 1 cut(s) 233
PfeI GAWTC 1 cut(s) 272
PfoI TCCNGGA 1 cut(s) 275
PkrI GCNGC 2 cut(s) 255, 326
PpuMI RGGWCCY 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 284
Psp5II RGGWCCY 1 cut(s) 86
Psp6I CCWGG 2 cut(s) 88, 275
PspGI CCWGG 2 cut(s) 88, 275
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 2 cut(s) 86, 255
PspPPI RGGWCCY 1 cut(s) 86
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SacI GAGCTC 1 cut(s) 284
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 2 cut(s) 254, 325
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 2 cut(s) 86, 255
ScrFI CCNGG 3 cut(s) 90, 260, 277
SduI GDGCHC 1 cut(s) 284
SetI ASST 8 cut(s) 61, 91, 139, 167, 172, 180, 207, 284
SfaNI GCATC 2 cut(s) 199, 311
SinI GGWCC 1 cut(s) 86
SsiI CCGC 2 cut(s) 146, 253
SspMI CTAG 2 cut(s) 210, 349
SstI GAGCTC 1 cut(s) 284
StyD4I CCNGG 3 cut(s) 88, 258, 275
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 155
TatI WGTACW 1 cut(s) 102
TauI GCSGC 1 cut(s) 256
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 2 cut(s) 85, 225
TseI GCWGC 1 cut(s) 324
TspGWI ACGGA 2 cut(s) 111, 141
TspRI CASTG 2 cut(s) 85, 225
VpaK11BI GGWCC 1 cut(s) 86
XspI CTAG 2 cut(s) 210, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.