Rroxscaffold_2G00097950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014773
Physical Location & Seq
Reverse (-)
19138708 .. 19140128
1421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00097950.1

Sequence Viewer

Length: 483 bp
ATGGAGGCTGATGATGAGAAAAAAGCAGTCTATGCTTCTCCAACATCATCACCTCCAACACCTCCCTCACCACTTCCCATCAGTGTTGGACCCGGCAACCAAAAGTACTTATTCTCGCCGTCTCCGTCTCCCTCGCCGCCTTTCTCCCTCCCTCAAGCCACACGTCTGCCGAGAACCTCCCTCTTCTCCTCCCTGAGGAGCTGCAGCCCAGTCCTAAAGTGCCACCATCAGCATTTTCCTTGGATTATAGTAGACCAGCGCCGGACCATTTGGATTCCAGGAGCTCATGCCTTAGAGACTTGCTCTGTTTCCTTTGAGAAACATGGGACCTTTTATGAGGTTAGAGTGGTTTATAGAAAGATGCTGCAACTGCTGTACCAGGTCTCCCTATCAACTAGAAAACAGATCCTCATCAAGAGCAGCAGTCCCAGTGTGATTGATATTGTGTTGAAGGTTTTGGTAGAGATTCAAAGCCGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.92

Weight (kDa)

9.75

Isoelectric Point (pI)

72.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014773)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37030
malus_domestica MD09G1164800.v1.1 MD17G1163400.v1.1
prunus_persica Prupe.3G022200_v2.0.a1 Prupe.3G022200_v2.0.a1
pyrus_communis pycom09g08200 pycom17g15620
rosa_chinensis RchiOBHm_Chr2g0149581
rosa_laevigata RLG00000020426
rosa_multiflora Rmu_sc0006867.1_g000022
rosa_roxburghii Rroxscaffold_2G00097950
rosa_rugosa Rorug02G0412600
rosa_samantha Rh2AG473100 Rh2BG485100 Rh2CG458900 Rh2DG494300
rosa_wichuraiana Rw2G038580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 252
AciI CCGC 2 cut(s) 137, 475
AclWI GGATC 1 cut(s) 400
AfaI GTAC 2 cut(s) 107, 377
AfiI CCNNNNNNNGG 1 cut(s) 195
AflIII ACRYGT 1 cut(s) 161
AgsI TTSAA 2 cut(s) 451, 470
AjiI CACGTC 1 cut(s) 164
AjnI CCWGG 2 cut(s) 277, 378
AluBI AGCT 2 cut(s) 201, 284
AluI AGCT 2 cut(s) 201, 284
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 4 cut(s) 126, 132, 290, 388
AlwI GGATC 1 cut(s) 400
ApeKI GCWGC 4 cut(s) 201, 204, 364, 420
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 3 cut(s) 89, 264, 327
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 2 cut(s) 42, 60
AvaII GGWCC 3 cut(s) 89, 264, 327
AxyI CCTNAGG 1 cut(s) 194
BaeI ACNNNNGTAYC 2 cut(s) 359, 392
BanII GRGCYC 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 4 cut(s) 188, 216, 351, 432
BccI CCATC 2 cut(s) 86, 234
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 2 cut(s) 279, 380
BcnI CCSGG 1 cut(s) 93
BcoDI GTCTC 4 cut(s) 126, 132, 290, 388
BfaI CTAG 1 cut(s) 396
BfmI CTRYAG 1 cut(s) 202
BfoI RGCGCY 1 cut(s) 262
BisI GCNGC 6 cut(s) 137, 202, 205, 365, 421, 475
BlsI GCNGC 6 cut(s) 138, 203, 206, 366, 422, 476
BmcAI AGTACT 1 cut(s) 107
Bme1390I CCNGG 3 cut(s) 93, 279, 380
Bme18I GGWCC 3 cut(s) 89, 264, 327
BmgBI CACGTC 1 cut(s) 164
BmgT120I GGNCC 3 cut(s) 89, 264, 327
BmiI GGNNCC 2 cut(s) 91, 328
BmrFI CCNGG 3 cut(s) 93, 279, 380
BmrI ACTGGG 2 cut(s) 203, 423
BmsI GCATC 1 cut(s) 351
BmuI ACTGGG 2 cut(s) 203, 423
BplI GAGNNNNNCTC 2 cut(s) 287, 319
BpuEI CTTGAG 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 93
BsaBI GATNNNNATC 1 cut(s) 410
BsaI GGTCTC 1 cut(s) 388
BsaJI CCNNGG 1 cut(s) 239
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse1I ACTGG 2 cut(s) 209, 429
Bse21I CCTNAGG 1 cut(s) 194
Bse8I GATNNNNATC 1 cut(s) 410
BseBI CCWGG 2 cut(s) 279, 380
BseDI CCNNGG 1 cut(s) 239
BseJI GATNNNNATC 1 cut(s) 410
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 2 cut(s) 209, 429
BseRI GAGGAG 2 cut(s) 178, 211
BseXI GCAGC 4 cut(s) 188, 216, 351, 432
BsiHKAI GWGCWC 1 cut(s) 286
BsiSI CCGG 2 cut(s) 93, 262
BslFI GGGAC 2 cut(s) 340, 411
BslI CCNNNNNNNGG 1 cut(s) 195
BsmAI GTCTC 4 cut(s) 126, 132, 290, 388
BsmBI CGTCTC 2 cut(s) 126, 132
BsmFI GGGAC 2 cut(s) 340, 411
Bso31I GGTCTC 1 cut(s) 388
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 1 cut(s) 405
BspACI CCGC 2 cut(s) 137, 475
BspCNI CTCAG 1 cut(s) 186
BspLI GGNNCC 2 cut(s) 91, 328
BspMAI CTGCAG 1 cut(s) 206
BspPI GGATC 1 cut(s) 400
BspTNI GGTCTC 1 cut(s) 388
BsrI ACTGG 2 cut(s) 209, 429
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 1 cut(s) 405
BssT1I CCWWGG 1 cut(s) 239
Bst2UI CCWGG 2 cut(s) 279, 380
Bst6I CTCTTC 1 cut(s) 188
BstAPI GCANNNNNTGC 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 194, 292
BstENI CCTNNNNNAGG 1 cut(s) 193
BstH2I RGCGCY 1 cut(s) 262
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 1 cut(s) 408
BstMAI GTCTC 4 cut(s) 126, 132, 290, 388
BstMBI GATC 1 cut(s) 405
BstMWI GCNNNNNNNGC 2 cut(s) 32, 370
BstNI CCWGG 2 cut(s) 279, 380
BstSCI CCNGG 3 cut(s) 91, 277, 378
BstSFI CTRYAG 1 cut(s) 202
BstV1I GCAGC 4 cut(s) 188, 216, 351, 432
BstX2I RGATCY 1 cut(s) 405
BstYI RGATCY 1 cut(s) 405
Bsu36I CCTNAGG 1 cut(s) 194
BtrI CACGTC 1 cut(s) 164
BtsIMutI CAGTG 2 cut(s) 88, 436
CfoI GCGC 1 cut(s) 261
Cfr13I GGNCC 3 cut(s) 89, 264, 327
CsiI ACCWGGT 1 cut(s) 378
Csp6I GTAC 2 cut(s) 106, 376
CviAII CATG 2 cut(s) 287, 323
CviJI RGCY 6 cut(s) 8, 158, 201, 207, 284, 474
CviKI_1 RGCY 6 cut(s) 8, 158, 201, 207, 284, 474
CviQI GTAC 2 cut(s) 106, 376
DdeI CTNAG 2 cut(s) 194, 292
DpnI GATC 1 cut(s) 407
DpnII GATC 1 cut(s) 405
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Ecl136II GAGCTC 1 cut(s) 284
Eco130I CCWWGG 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 286
Eco31I GGTCTC 1 cut(s) 388
Eco47I GGWCC 3 cut(s) 89, 264, 327
Eco53kI GAGCTC 1 cut(s) 284
Eco81I CCTNAGG 1 cut(s) 194
EcoICRI GAGCTC 1 cut(s) 284
EcoNI CCTNNNNNAGG 1 cut(s) 193
EcoO109I RGGNCCY 1 cut(s) 327
EcoRII CCWGG 2 cut(s) 277, 378
EcoT14I CCWWGG 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 239
Esp3I CGTCTC 2 cut(s) 126, 132
FaeI CATG 2 cut(s) 290, 326
FaiI YATR 6 cut(s) 33, 248, 288, 324, 336, 354
FaqI GGGAC 2 cut(s) 340, 411
FatI CATG 2 cut(s) 286, 322
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 6 cut(s) 137, 202, 205, 365, 421, 475
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 6 cut(s) 137, 202, 205, 365, 421, 475
FspBI CTAG 1 cut(s) 396
GlaI GCGC 1 cut(s) 260
GluI GCNGC 6 cut(s) 137, 202, 205, 365, 421, 475
HaeII RGCGCY 1 cut(s) 262
HapII CCGG 2 cut(s) 93, 262
HhaI GCGC 1 cut(s) 261
Hin1II CATG 2 cut(s) 290, 326
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HinfI GANTC 2 cut(s) 274, 466
HpaII CCGG 2 cut(s) 93, 262
HphI GGTGA 2 cut(s) 42, 60
Hpy166II GTNNAC 1 cut(s) 253
Hpy188III TCNNGA 1 cut(s) 415
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 445
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 2 cut(s) 204, 367
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 370
HpyF3I CTNAG 2 cut(s) 194, 292
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 2 cut(s) 290, 326
HspAI GCGC 1 cut(s) 259
Kzo9I GATC 1 cut(s) 405
LmnI GCTCC 2 cut(s) 198, 281
Lsp1109I GCAGC 4 cut(s) 188, 216, 351, 432
LweI GCATC 1 cut(s) 351
MabI ACCWGGT 1 cut(s) 378
MaeI CTAG 1 cut(s) 396
MaeII ACGT 1 cut(s) 163
MalI GATC 1 cut(s) 407
MboI GATC 1 cut(s) 405
MboII GAAGA 1 cut(s) 175
MflI RGATCY 1 cut(s) 405
MhlI GDGCHC 1 cut(s) 286
MmeI TCCRAC 3 cut(s) 65, 67, 80
MspI CCGG 2 cut(s) 93, 262
MspR9I CCNGG 3 cut(s) 93, 279, 380
MvaI CCWGG 2 cut(s) 279, 380
MwoI GCNNNNNNNGC 2 cut(s) 32, 370
NciI CCSGG 1 cut(s) 93
NdeII GATC 1 cut(s) 405
NlaIII CATG 2 cut(s) 290, 326
NlaIV GGNNCC 2 cut(s) 91, 328
NmeAIII GCCGAG 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PfeI GAWTC 2 cut(s) 274, 466
PfoI TCCNGGA 1 cut(s) 277
PkrI GCNGC 6 cut(s) 138, 203, 206, 366, 422, 476
PpuMI RGGWCCY 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 286
Psp5II RGGWCCY 1 cut(s) 327
Psp6I CCWGG 2 cut(s) 277, 378
PspGI CCWGG 2 cut(s) 277, 378
PspN4I GGNNCC 2 cut(s) 91, 328
PspPI GGNCC 3 cut(s) 89, 264, 327
PspPPI RGGWCCY 1 cut(s) 327
PstI CTGCAG 1 cut(s) 206
PsuI RGATCY 1 cut(s) 405
RsaI GTAC 2 cut(s) 107, 377
RsaNI GTAC 2 cut(s) 106, 376
SacI GAGCTC 1 cut(s) 286
SatI GCNGC 6 cut(s) 137, 202, 205, 365, 421, 475
Sau3AI GATC 1 cut(s) 405
Sau96I GGNCC 3 cut(s) 89, 264, 327
ScaI AGTACT 1 cut(s) 107
ScrFI CCNGG 3 cut(s) 93, 279, 380
SduI GDGCHC 1 cut(s) 286
SexAI ACCWGGT 1 cut(s) 378
SfaNI GCATC 1 cut(s) 351
SfcI CTRYAG 1 cut(s) 202
SinI GGWCC 3 cut(s) 89, 264, 327
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
SsiI CCGC 2 cut(s) 137, 475
SspMI CTAG 1 cut(s) 396
SstI GAGCTC 1 cut(s) 286
StyD4I CCNGG 3 cut(s) 91, 277, 378
StyI CCWWGG 1 cut(s) 239
TaiI ACGT 1 cut(s) 166
TatI WGTACW 1 cut(s) 105
TauI GCSGC 2 cut(s) 139, 477
TfiI GAWTC 2 cut(s) 274, 466
TscAI CASTG 2 cut(s) 88, 436
TseI GCWGC 4 cut(s) 201, 204, 364, 420
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 2 cut(s) 88, 436
VpaK11BI GGWCC 3 cut(s) 89, 264, 327
XagI CCTNNNNNAGG 1 cut(s) 193
XmiI GTMKAC 1 cut(s) 252
XspI CTAG 1 cut(s) 396
ZrmI AGTACT 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.