Rmu_sc0006867.1_g000022

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006867.1
OG0014773
Physical Location & Seq
Forward (+)
118367 .. 119499
1133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006867.1_g000022.1.cds

Sequence Viewer

Length: 399 bp
atggaggctgatgatgagaaaagagcactctatgcttctccaacatcatcacctccaacacctccctcaccacttcccatcagtgttggacccggcaaccaaaagtacttattctcgccgtctccgtctccctcgccacctttctcccctccctcaagccacacgtctgccgagaacctccctcttctcctccctgagaagctgcagcatagtcctaaagtgacaccatcagcattttccttggattatagtagaccagcgccggaccatttggattccaggagttcatgccttagagacttgttagagtggtttatagaaagatgctgcaactgctgtaccaggtctccctatcgactagaaaacagatcctcatcaagagcagcagtcccagtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.45

Weight (kDa)

6.81

Isoelectric Point (pI)

105.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014773)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37030
malus_domestica MD09G1164800.v1.1 MD17G1163400.v1.1
prunus_persica Prupe.3G022200_v2.0.a1 Prupe.3G022200_v2.0.a1
pyrus_communis pycom09g08200 pycom17g15620
rosa_chinensis RchiOBHm_Chr2g0149581
rosa_laevigata RLG00000020426
rosa_multiflora Rmu_sc0006867.1_g000022
rosa_roxburghii Rroxscaffold_2G00097950
rosa_rugosa Rorug02G0412600
rosa_samantha Rh2AG473100 Rh2BG485100 Rh2CG458900 Rh2DG494300
rosa_wichuraiana Rw2G038580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 253
AclWI GGATC 1 cut(s) 363
AfaI GTAC 2 cut(s) 107, 340
AflIII ACRYGT 1 cut(s) 162
AjiI CACGTC 1 cut(s) 165
AjnI CCWGG 2 cut(s) 278, 341
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 4 cut(s) 126, 132, 291, 351
AlwI GGATC 1 cut(s) 363
ApeKI GCWGC 4 cut(s) 202, 205, 327, 383
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 2 cut(s) 89, 265
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 2 cut(s) 42, 60
AvaII GGWCC 2 cut(s) 89, 265
BaeI ACNNNNGTAYC 2 cut(s) 322, 355
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 4 cut(s) 189, 217, 314, 395
BccI CCATC 2 cut(s) 86, 235
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 2 cut(s) 280, 343
BcnI CCSGG 1 cut(s) 93
BcoDI GTCTC 4 cut(s) 126, 132, 291, 351
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 203
BfoI RGCGCY 1 cut(s) 263
BisI GCNGC 4 cut(s) 203, 206, 328, 384
BlsI GCNGC 4 cut(s) 204, 207, 329, 385
BmcAI AGTACT 1 cut(s) 107
Bme1390I CCNGG 3 cut(s) 93, 280, 343
Bme18I GGWCC 2 cut(s) 89, 265
BmgBI CACGTC 1 cut(s) 165
BmgT120I GGNCC 2 cut(s) 89, 265
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 3 cut(s) 93, 280, 343
BmrI ACTGGG 1 cut(s) 386
BmsI GCATC 1 cut(s) 314
BmuI ACTGGG 1 cut(s) 386
BpuEI CTTGAG 1 cut(s) 139
BpuMI CCSGG 1 cut(s) 93
BsaBI GATNNNNATC 1 cut(s) 373
BsaI GGTCTC 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bse1I ACTGG 1 cut(s) 392
Bse8I GATNNNNATC 1 cut(s) 373
BseBI CCWGG 2 cut(s) 280, 343
BseDI CCNNGG 1 cut(s) 240
BseJI GATNNNNATC 1 cut(s) 373
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 392
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 4 cut(s) 189, 217, 314, 395
BsiHKAI GWGCWC 1 cut(s) 28
BsiSI CCGG 2 cut(s) 93, 263
BslFI GGGAC 1 cut(s) 374
BsmAI GTCTC 4 cut(s) 126, 132, 291, 351
BsmBI CGTCTC 2 cut(s) 126, 132
BsmFI GGGAC 1 cut(s) 374
Bso31I GGTCTC 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 1 cut(s) 368
BspCNI CTCAG 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 91
BspMAI CTGCAG 1 cut(s) 207
BspPI GGATC 1 cut(s) 363
BspTNI GGTCTC 1 cut(s) 351
BsrI ACTGG 1 cut(s) 392
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 1 cut(s) 368
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 2 cut(s) 280, 343
Bst6I CTCTTC 1 cut(s) 189
BstAPI GCANNNNNTGC 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 195, 293
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 1 cut(s) 371
BstMAI GTCTC 4 cut(s) 126, 132, 291, 351
BstMBI GATC 1 cut(s) 368
BstMWI GCNNNNNNNGC 2 cut(s) 32, 333
BstNI CCWGG 2 cut(s) 280, 343
BstSCI CCNGG 3 cut(s) 91, 278, 341
BstSFI CTRYAG 1 cut(s) 203
BstV1I GCAGC 4 cut(s) 189, 217, 314, 395
BstX2I RGATCY 1 cut(s) 368
BstYI RGATCY 1 cut(s) 368
BtrI CACGTC 1 cut(s) 165
BtsIMutI CAGTG 2 cut(s) 88, 399
CfoI GCGC 1 cut(s) 262
Cfr13I GGNCC 2 cut(s) 89, 265
CsiI ACCWGGT 1 cut(s) 341
Csp6I GTAC 2 cut(s) 106, 339
CviAII CATG 1 cut(s) 288
CviJI RGCY 3 cut(s) 8, 159, 202
CviKI_1 RGCY 3 cut(s) 8, 159, 202
CviQI GTAC 2 cut(s) 106, 339
DdeI CTNAG 2 cut(s) 195, 293
DpnI GATC 1 cut(s) 370
DpnII GATC 1 cut(s) 368
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 351
Eco47I GGWCC 2 cut(s) 89, 265
EcoRII CCWGG 2 cut(s) 278, 341
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
Esp3I CGTCTC 2 cut(s) 126, 132
FaeI CATG 1 cut(s) 291
FaiI YATR 5 cut(s) 33, 210, 249, 289, 317
FaqI GGGAC 1 cut(s) 374
FatI CATG 1 cut(s) 287
FblI GTMKAC 1 cut(s) 253
Fnu4HI GCNGC 4 cut(s) 203, 206, 328, 384
Fsp4HI GCNGC 4 cut(s) 203, 206, 328, 384
FspBI CTAG 1 cut(s) 359
GlaI GCGC 1 cut(s) 261
GluI GCNGC 4 cut(s) 203, 206, 328, 384
HaeII RGCGCY 1 cut(s) 263
HapII CCGG 2 cut(s) 93, 263
HhaI GCGC 1 cut(s) 262
Hin1II CATG 1 cut(s) 291
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HinfI GANTC 1 cut(s) 275
HpaII CCGG 2 cut(s) 93, 263
HphI GGTGA 2 cut(s) 42, 60
Hpy166II GTNNAC 1 cut(s) 254
Hpy188III TCNNGA 1 cut(s) 378
Hpy8I GTNNAC 1 cut(s) 254
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 2 cut(s) 205, 330
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 333
HpyF3I CTNAG 2 cut(s) 195, 293
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 1 cut(s) 291
HspAI GCGC 1 cut(s) 260
Kzo9I GATC 1 cut(s) 368
LpnPI CCDG 8 cut(s) 106, 207, 265, 270, 276, 292, 328, 355
Lsp1109I GCAGC 4 cut(s) 189, 217, 314, 395
LweI GCATC 1 cut(s) 314
MabI ACCWGGT 1 cut(s) 341
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 220
MalI GATC 1 cut(s) 370
MboI GATC 1 cut(s) 368
MboII GAAGA 1 cut(s) 176
MflI RGATCY 1 cut(s) 368
MhlI GDGCHC 1 cut(s) 28
MmeI TCCRAC 3 cut(s) 65, 67, 80
MspI CCGG 2 cut(s) 93, 263
MspR9I CCNGG 3 cut(s) 93, 280, 343
MvaI CCWGG 2 cut(s) 280, 343
MwoI GCNNNNNNNGC 2 cut(s) 32, 333
NciI CCSGG 1 cut(s) 93
NdeII GATC 1 cut(s) 368
NlaIII CATG 1 cut(s) 291
NlaIV GGNNCC 1 cut(s) 91
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PfeI GAWTC 1 cut(s) 275
PfoI TCCNGGA 1 cut(s) 278
PkrI GCNGC 4 cut(s) 204, 207, 329, 385
Psp6I CCWGG 2 cut(s) 278, 341
PspGI CCWGG 2 cut(s) 278, 341
PspN4I GGNNCC 1 cut(s) 91
PspPI GGNCC 2 cut(s) 89, 265
PstI CTGCAG 1 cut(s) 207
PsuI RGATCY 1 cut(s) 368
RsaI GTAC 2 cut(s) 107, 340
RsaNI GTAC 2 cut(s) 106, 339
SatI GCNGC 4 cut(s) 203, 206, 328, 384
Sau3AI GATC 1 cut(s) 368
Sau96I GGNCC 2 cut(s) 89, 265
ScaI AGTACT 1 cut(s) 107
ScrFI CCNGG 3 cut(s) 93, 280, 343
SduI GDGCHC 1 cut(s) 28
SetI ASST 7 cut(s) 55, 64, 142, 167, 180, 204, 347
SexAI ACCWGGT 1 cut(s) 341
SfaNI GCATC 1 cut(s) 314
SfcI CTRYAG 1 cut(s) 203
SinI GGWCC 2 cut(s) 89, 265
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 3 cut(s) 91, 278, 341
StyI CCWWGG 1 cut(s) 240
TaiI ACGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 355
TatI WGTACW 1 cut(s) 105
TfiI GAWTC 1 cut(s) 275
TscAI CASTG 2 cut(s) 88, 399
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 4 cut(s) 202, 205, 327, 383
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 2 cut(s) 88, 399
VpaK11BI GGWCC 2 cut(s) 89, 265
XmiI GTMKAC 1 cut(s) 253
XspI CTAG 1 cut(s) 359
ZrmI AGTACT 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.