Rh2AG473100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014773
Physical Location & Seq
Forward (+)
69242951 .. 69246006
3056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG473100.1

Sequence Viewer

Length: 321 bp
ATGGAGGCTGATGATGAGAAAAGAGCACTCTATGCTTCTCCAACATCATCACCTCCAACACCTCCCTCACCACTTCCCATCAGTGTTGGACCCGGCAACCAAAAGTACTTATTCTCGCCGTCTCCGTCTCCCTCGCCTCCTTTCTCCCCTCCCTCAAGCCACACGTCTGCCGAGAACCTCCCTCTTCTCCTCCCTGAGAAGCTGCAGCCTAGTCCTAAAGTGACACCATCAGCATTTTCCTTGGATTATAGTAGACCAGCGCCGGACCATTTGGATTCCAGGAGTTCATGCCTTAGAGACTTGTTTCTTAGTTCGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.33

Weight (kDa)

5.18

Isoelectric Point (pI)

108.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014773)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37030
malus_domestica MD09G1164800.v1.1 MD17G1163400.v1.1
prunus_persica Prupe.3G022200_v2.0.a1 Prupe.3G022200_v2.0.a1
pyrus_communis pycom09g08200 pycom17g15620
rosa_chinensis RchiOBHm_Chr2g0149581
rosa_laevigata RLG00000020426
rosa_multiflora Rmu_sc0006867.1_g000022
rosa_roxburghii Rroxscaffold_2G00097950
rosa_rugosa Rorug02G0412600
rosa_samantha Rh2AG473100 Rh2BG485100 Rh2CG458900 Rh2DG494300
rosa_wichuraiana Rw2G038580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 253
AfaI GTAC 1 cut(s) 107
AflIII ACRYGT 1 cut(s) 162
AjiI CACGTC 1 cut(s) 165
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 3 cut(s) 126, 132, 291
ApeKI GCWGC 2 cut(s) 202, 205
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 2 cut(s) 89, 265
AsuC2I CCSGG 1 cut(s) 93
AsuHPI GGTGA 2 cut(s) 42, 60
AvaII GGWCC 2 cut(s) 89, 265
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 2 cut(s) 189, 217
BccI CCATC 2 cut(s) 86, 235
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 280
BcnI CCSGG 1 cut(s) 93
BcoDI GTCTC 3 cut(s) 126, 132, 291
BfaI CTAG 1 cut(s) 210
BfmI CTRYAG 1 cut(s) 203
BfoI RGCGCY 1 cut(s) 263
BisI GCNGC 2 cut(s) 203, 206
BlsI GCNGC 2 cut(s) 204, 207
BmcAI AGTACT 1 cut(s) 107
Bme1390I CCNGG 2 cut(s) 93, 280
Bme18I GGWCC 2 cut(s) 89, 265
BmgBI CACGTC 1 cut(s) 165
BmgT120I GGNCC 2 cut(s) 89, 265
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 2 cut(s) 93, 280
BpuEI CTTGAG 1 cut(s) 139
BpuMI CCSGG 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 240
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 2 cut(s) 189, 217
BsiHKAI GWGCWC 1 cut(s) 28
BsiSI CCGG 2 cut(s) 93, 263
BsmAI GTCTC 3 cut(s) 126, 132, 291
BsmBI CGTCTC 2 cut(s) 126, 132
Bsp1286I GDGCHC 1 cut(s) 28
BspCNI CTCAG 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 91
BspMAI CTGCAG 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 189
BstAPI GCANNNNNTGC 1 cut(s) 32
BstDEI CTNAG 3 cut(s) 195, 293, 308
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 1 cut(s) 262
BstMAI GTCTC 3 cut(s) 126, 132, 291
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 2 cut(s) 91, 278
BstSFI CTRYAG 1 cut(s) 203
BstV1I GCAGC 2 cut(s) 189, 217
BtrI CACGTC 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 88
CfoI GCGC 1 cut(s) 262
Cfr13I GGNCC 2 cut(s) 89, 265
Csp6I GTAC 1 cut(s) 106
CviAII CATG 1 cut(s) 288
CviJI RGCY 4 cut(s) 8, 159, 202, 208
CviKI_1 RGCY 4 cut(s) 8, 159, 202, 208
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 3 cut(s) 195, 293, 308
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 240
Eco47I GGWCC 2 cut(s) 89, 265
EcoRII CCWGG 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
Esp3I CGTCTC 2 cut(s) 126, 132
FaeI CATG 1 cut(s) 291
FaiI YATR 3 cut(s) 33, 249, 289
FatI CATG 1 cut(s) 287
FblI GTMKAC 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 203, 206
Fsp4HI GCNGC 2 cut(s) 203, 206
FspBI CTAG 1 cut(s) 210
GlaI GCGC 1 cut(s) 261
GluI GCNGC 2 cut(s) 203, 206
HaeII RGCGCY 1 cut(s) 263
HapII CCGG 2 cut(s) 93, 263
HhaI GCGC 1 cut(s) 262
Hin1II CATG 1 cut(s) 291
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HinfI GANTC 1 cut(s) 275
HpaII CCGG 2 cut(s) 93, 263
HphI GGTGA 2 cut(s) 42, 60
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 316
Hpy8I GTNNAC 1 cut(s) 254
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 1 cut(s) 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 3 cut(s) 195, 293, 308
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 1 cut(s) 291
HspAI GCGC 1 cut(s) 260
LpnPI CCDG 6 cut(s) 106, 207, 265, 270, 276, 292
Lsp1109I GCAGC 2 cut(s) 189, 217
MaeI CTAG 1 cut(s) 210
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 220
MboII GAAGA 1 cut(s) 176
MhlI GDGCHC 1 cut(s) 28
MmeI TCCRAC 3 cut(s) 65, 67, 80
MspI CCGG 2 cut(s) 93, 263
MspR9I CCNGG 2 cut(s) 93, 280
MvaI CCWGG 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 32
NciI CCSGG 1 cut(s) 93
NlaIII CATG 1 cut(s) 291
NlaIV GGNNCC 1 cut(s) 91
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PfeI GAWTC 1 cut(s) 275
PfoI TCCNGGA 1 cut(s) 278
PkrI GCNGC 2 cut(s) 204, 207
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 91
PspPI GGNCC 2 cut(s) 89, 265
PstI CTGCAG 1 cut(s) 207
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SatI GCNGC 2 cut(s) 203, 206
Sau96I GGNCC 2 cut(s) 89, 265
ScaI AGTACT 1 cut(s) 107
ScrFI CCNGG 2 cut(s) 93, 280
SduI GDGCHC 1 cut(s) 28
SetI ASST 5 cut(s) 55, 64, 167, 180, 204
SfcI CTRYAG 1 cut(s) 203
SinI GGWCC 2 cut(s) 89, 265
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 2 cut(s) 91, 278
StyI CCWWGG 1 cut(s) 240
TaiI ACGT 1 cut(s) 167
TatI WGTACW 1 cut(s) 105
TfiI GAWTC 1 cut(s) 275
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 2 cut(s) 202, 205
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 1 cut(s) 88
VpaK11BI GGWCC 2 cut(s) 89, 265
XmiI GTMKAC 1 cut(s) 253
XspI CTAG 1 cut(s) 210
ZrmI AGTACT 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.