Rorug02G0412600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014773
Physical Location & Seq
Reverse (-)
52868885 .. 52869259
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0412600.1

Sequence Viewer

Length: 375 bp
ATGATGCGTGCTCATTACCTCCTCGCACTCCTCGCCCTCCTTAATCCACTCTTCGCCGCAGGCGCTTCTGCTCCGACTGGTGAGTGGAAGCCTGTAGACCTCCGCGACCCGCTTGTGACAGATATCGGAAAGTTTGCAGTTATCGAATACAATCAGCGATATAAGAAGGACTTGTTCTTTCGGAAGGTGACTGAAGGCGCCTACAAGGATGAATATTATTCGCCGTATTCGAATGCCACCTTGTATCAGCTTGTCCTTATTGTCGATGCTGACTCAAGTCCTGACCCCAAACTTGCAGTTTATCAGACTACTGTCTTCCGTAGGCAGTGGGATCACTTTCTGAAATTGCTCTCCTTTGTTAAGATTTCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.3

Weight (kDa)

9.07

Isoelectric Point (pI)

21.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQAPI PF16845 33 - 121 6.6e-13 Aspartic acid proteinase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014773)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37030
malus_domestica MD09G1164800.v1.1 MD17G1163400.v1.1
prunus_persica Prupe.3G022200_v2.0.a1 Prupe.3G022200_v2.0.a1
pyrus_communis pycom09g08200 pycom17g15620
rosa_chinensis RchiOBHm_Chr2g0149581
rosa_laevigata RLG00000020426
rosa_multiflora Rmu_sc0006867.1_g000022
rosa_roxburghii Rroxscaffold_2G00097950
rosa_rugosa Rorug02G0412600
rosa_samantha Rh2AG473100 Rh2BG485100 Rh2CG458900 Rh2DG494300
rosa_wichuraiana Rw2G038580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AccI GTMKAC 1 cut(s) 96
AccII CGCG 1 cut(s) 105
AciI CCGC 3 cut(s) 57, 103, 110
AclWI GGATC 1 cut(s) 339
AcuI CTGAAG 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 198
AgsI TTSAA 1 cut(s) 369
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
Alw21I GWGCWC 1 cut(s) 13
AlwI GGATC 1 cut(s) 339
AspLEI GCGC 2 cut(s) 65, 200
AsuHPI GGTGA 2 cut(s) 92, 199
AsuII TTCGAA 1 cut(s) 230
BanI GGYRCC 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 13
BceAI ACGGC 1 cut(s) 208
BfmI CTRYAG 1 cut(s) 93
BfoI RGCGCY 2 cut(s) 66, 201
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 199
BmsI GCATC 1 cut(s) 256
BoxI GACNNNNGTC 2 cut(s) 276, 311
BpiI GAAGAC 1 cut(s) 307
Bpu14I TTCGAA 1 cut(s) 230
BpuEI CTTGAG 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 198
Bse1I ACTGG 1 cut(s) 82
BseGI GGATG 1 cut(s) 214
BseNI ACTGG 1 cut(s) 82
BseRI GAGGAG 2 cut(s) 11, 20
Bsh1236I CGCG 1 cut(s) 105
BshNI GGYRCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 13
BsmI GAATGC 1 cut(s) 238
Bsp119I TTCGAA 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 331
BspACI CCGC 3 cut(s) 57, 103, 110
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 199
BspPI GGATC 1 cut(s) 339
BspT104I TTCGAA 1 cut(s) 230
BspT107I GGYRCC 1 cut(s) 197
BsrI ACTGG 1 cut(s) 82
BssMI GATC 1 cut(s) 331
BssNI GRCGYC 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 198
BstBI TTCGAA 1 cut(s) 230
BstC8I GCNNGC 2 cut(s) 9, 61
BstF5I GGATG 1 cut(s) 214
BstFNI CGCG 1 cut(s) 105
BstH2I RGCGCY 2 cut(s) 66, 201
BstHHI GCGC 2 cut(s) 65, 200
BstKTI GATC 1 cut(s) 334
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 2 cut(s) 32, 62
BstPAI GACNNNNGTC 2 cut(s) 276, 311
BstSFI CTRYAG 1 cut(s) 93
BstUI CGCG 1 cut(s) 105
BstV2I GAAGAC 1 cut(s) 307
BtsCI GGATG 1 cut(s) 214
BtsI GCAGTG 1 cut(s) 332
BtsIMutI CAGTG 1 cut(s) 332
Cac8I GCNNGC 2 cut(s) 9, 61
CfoI GCGC 2 cut(s) 65, 200
CviJI RGCY 2 cut(s) 91, 250
CviKI_1 RGCY 2 cut(s) 91, 250
DinI GGCGCC 1 cut(s) 199
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco32I GATATC 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 213
EcoRV GATATC 1 cut(s) 124
EgeI GGCGCC 1 cut(s) 199
EheI GGCGCC 1 cut(s) 199
FaiI YATR 1 cut(s) 162
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FauI CCCGC 1 cut(s) 117
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 57
GlaI GCGC 2 cut(s) 64, 199
GluI GCNGC 1 cut(s) 57
HaeII RGCGCY 2 cut(s) 66, 201
HhaI GCGC 2 cut(s) 65, 200
Hin1I GRCGYC 1 cut(s) 198
Hin6I GCGC 2 cut(s) 63, 198
HinP1I GCGC 2 cut(s) 63, 198
HinfI GANTC 1 cut(s) 272
HphI GGTGA 2 cut(s) 92, 199
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 5 cut(s) 75, 128, 183, 306, 342
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 3 cut(s) 160, 178, 188
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4V TGCA 2 cut(s) 137, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 62
Hsp92I GRCGYC 1 cut(s) 198
HspAI GCGC 2 cut(s) 63, 198
KasI GGCGCC 1 cut(s) 197
Kzo9I GATC 1 cut(s) 331
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 4 cut(s) 45, 63, 105, 294
LweI GCATC 1 cut(s) 256
MaeIII GTNAC 2 cut(s) 115, 187
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 2 cut(s) 43, 307
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 1 cut(s) 344
Mly113I GGCGCC 1 cut(s) 198
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 5 cut(s) 29, 32, 41, 47, 110
MseI TTAA 2 cut(s) 42, 360
Mva1269I GAATGC 1 cut(s) 238
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 32, 62
NarI GGCGCC 1 cut(s) 198
NdeII GATC 1 cut(s) 331
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 2 cut(s) 115, 187
NspV TTCGAA 1 cut(s) 230
PcsI WCGNNNNNNNCGW 1 cut(s) 227
PctI GAATGC 1 cut(s) 238
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 1 cut(s) 266
PluTI GGCGCC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 266
PshAI GACNNNNGTC 2 cut(s) 276, 311
PspN4I GGNNCC 1 cut(s) 199
SaqAI TTAA 2 cut(s) 42, 360
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 331
SchI GAGTC 1 cut(s) 266
SduI GDGCHC 1 cut(s) 13
SetI ASST 5 cut(s) 21, 102, 189, 242, 252
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 1 cut(s) 93
SfoI GGCGCC 1 cut(s) 199
SfuI TTCGAA 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
Sse9I AATT 1 cut(s) 344
SsiI CCGC 3 cut(s) 57, 103, 110
SspDI GGCGCC 1 cut(s) 197
SspI AATATT 1 cut(s) 215
TaaI ACNGT 1 cut(s) 313
TaqI TCGA 3 cut(s) 144, 230, 264
TasI AATT 1 cut(s) 344
TauI GCSGC 1 cut(s) 59
Tru1I TTAA 2 cut(s) 42, 360
Tru9I TTAA 2 cut(s) 42, 360
TscAI CASTG 1 cut(s) 332
TseFI GTSAC 2 cut(s) 115, 187
Tsp45I GTSAC 2 cut(s) 115, 187
TspDTI ATGAA 1 cut(s) 225
TspGWI ACGGA 1 cut(s) 308
TspRI CASTG 1 cut(s) 332
XmiI GTMKAC 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.