pycom09g08200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0014773
Physical Location & Seq
Reverse (-)
6289656 .. 6291016
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g08200.1

Sequence Viewer

Length: 351 bp
ATGGAGGACGATGGTGAGAAAAAAGCCTACCCGTCTCCGACATCATCTCCTCCCACACCTCCCTCTCCACTTCCAATCAGTGTAGGGCCTGGCAACCAAAAGTACATATTCTCACCTTCTCCTTCCCCCTCGCCGCCTTTCTCTCCGGCTCCCTCGAGCCACACGTCAGCTGAGAACCTCCCTCTTCTGCCTCGTGATCAGAAGCTCTCTAGTAGTCCTGCAGGGCCATCGGTATTCTCGTTGGATTATCGGAGACCGCCAGAGGATTCGGATTCCAAGAGCTCATGCCTTAAAGACTTGTTAGAGTGGTTCATAGAAAGATGCTGCAACTGTGGTGCTAAGTCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.43

Weight (kDa)

5.28

Isoelectric Point (pI)

98.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014773)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37030
malus_domestica MD09G1164800.v1.1 MD17G1163400.v1.1
prunus_persica Prupe.3G022200_v2.0.a1 Prupe.3G022200_v2.0.a1
pyrus_communis pycom09g08200 pycom17g15620
rosa_chinensis RchiOBHm_Chr2g0149581
rosa_laevigata RLG00000020426
rosa_multiflora Rmu_sc0006867.1_g000022
rosa_roxburghii Rroxscaffold_2G00097950
rosa_rugosa Rorug02G0412600
rosa_samantha Rh2AG473100 Rh2BG485100 Rh2CG458900 Rh2DG494300
rosa_wichuraiana Rw2G038580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 134, 257
AfaI GTAC 1 cut(s) 104
AflIII ACRYGT 1 cut(s) 162
AjiI CACGTC 1 cut(s) 165
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 3 cut(s) 170, 205, 282
AluI AGCT 3 cut(s) 170, 205, 282
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 2 cut(s) 39, 247
Ama87I CYCGRG 1 cut(s) 154
AoxI GGCC 2 cut(s) 86, 224
ApeKI GCWGC 1 cut(s) 324
AspS9I GGNCC 2 cut(s) 86, 224
AsuHPI GGTGA 2 cut(s) 26, 105
AvaI CYCGRG 1 cut(s) 154
BanII GRGCYC 1 cut(s) 284
BauI CACGAG 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 311
BccI CCATC 2 cut(s) 5, 235
BcgI CGANNNNNNTGC 2 cut(s) 210, 244
BciT130I CCWGG 1 cut(s) 90
BclI TGATCA 1 cut(s) 196
BcoDI GTCTC 2 cut(s) 39, 247
BfaI CTAG 1 cut(s) 210
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 2 cut(s) 134, 325
BlsI GCNGC 2 cut(s) 135, 326
Bme1390I CCNGG 1 cut(s) 90
BmeT110I CYCGRG 1 cut(s) 154
BmgBI CACGTC 1 cut(s) 165
BmgT120I GGNCC 2 cut(s) 86, 224
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 90
BmsI GCATC 1 cut(s) 311
BsaI GGTCTC 1 cut(s) 247
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
BseBI CCWGG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 311
BshFI GGCC 2 cut(s) 88, 226
BsiHKAI GWGCWC 1 cut(s) 284
BsiHKCI CYCGRG 1 cut(s) 154
BsiSI CCGG 1 cut(s) 146
BsmAI GTCTC 2 cut(s) 39, 247
BsmBI CGTCTC 1 cut(s) 39
BsnI GGCC 2 cut(s) 88, 226
Bso31I GGTCTC 1 cut(s) 247
BsoBI CYCGRG 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 2 cut(s) 134, 257
BspANI GGCC 2 cut(s) 88, 226
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 150
BspMAI CTGCAG 1 cut(s) 223
BspTNI GGTCTC 1 cut(s) 247
BssMI GATC 1 cut(s) 196
BssSI CACGAG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 1 cut(s) 189
BstDEI CTNAG 3 cut(s) 171, 339, 345
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 2 cut(s) 39, 247
BstMBI GATC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 88
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 311
BsuRI GGCC 2 cut(s) 88, 226
BtrI CACGTC 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 85
Cfr13I GGNCC 2 cut(s) 86, 224
Csp6I GTAC 1 cut(s) 103
CviAII CATG 1 cut(s) 285
CviJI RGCY 8 cut(s) 26, 88, 149, 159, 170, 205, 226, 282
CviKI_1 RGCY 8 cut(s) 26, 88, 149, 159, 170, 205, 226, 282
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 3 cut(s) 171, 339, 345
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Ecl136II GAGCTC 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 284
Esp3I CGTCTC 1 cut(s) 39
FaeI CATG 1 cut(s) 288
FaiI YATR 3 cut(s) 107, 286, 314
FatI CATG 1 cut(s) 284
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 134, 325
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 134, 325
FspBI CTAG 1 cut(s) 210
GluI GCNGC 2 cut(s) 134, 325
HaeIII GGCC 2 cut(s) 88, 226
HapII CCGG 1 cut(s) 146
Hin1II CATG 1 cut(s) 288
HinfI GANTC 2 cut(s) 266, 272
HpaII CCGG 1 cut(s) 146
HphI GGTGA 2 cut(s) 26, 105
Hpy188I TCNGA 4 cut(s) 39, 201, 252, 271
Hpy188III TCNNGA 1 cut(s) 194
HpyAV CCTTC 2 cut(s) 126, 132
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 2 cut(s) 221, 327
HpyF3I CTNAG 3 cut(s) 171, 339, 345
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 1 cut(s) 288
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 6 cut(s) 75, 102, 159, 207, 231, 273
Lsp1109I GCAGC 1 cut(s) 311
LweI GCATC 1 cut(s) 311
MaeI CTAG 1 cut(s) 210
MaeII ACGT 1 cut(s) 164
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 1 cut(s) 176
MhlI GDGCHC 1 cut(s) 284
MmeI TCCRAC 2 cut(s) 62, 222
MnlI CCTC 9 cut(s) 60, 69, 73, 139, 163, 188, 192, 201, 256
MseI TTAA 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 90
MvaI CCWGG 1 cut(s) 90
NdeII GATC 1 cut(s) 196
NlaIII CATG 1 cut(s) 288
NlaIV GGNNCC 1 cut(s) 150
PaeR7I CTCGAG 1 cut(s) 154
PcsI WCGNNNNNNNCGW 2 cut(s) 161, 236
PfeI GAWTC 2 cut(s) 266, 272
PkrI GCNGC 2 cut(s) 135, 326
Psp124BI GAGCTC 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 2 cut(s) 86, 224
PspXI VCTCGAGB 1 cut(s) 154
PstI CTGCAG 1 cut(s) 223
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SacI GAGCTC 1 cut(s) 284
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 2 cut(s) 134, 325
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 2 cut(s) 86, 224
SbfI CCTGCAGG 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 90
SdaI CCTGCAGG 1 cut(s) 223
SduI GDGCHC 1 cut(s) 284
SetI ASST 7 cut(s) 61, 118, 167, 172, 180, 207, 284
SfaNI GCATC 1 cut(s) 311
SfcI CTRYAG 1 cut(s) 219
Sfr274I CTCGAG 1 cut(s) 154
SlaI CTCGAG 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse8387I CCTGCAGG 1 cut(s) 223
SsiI CCGC 2 cut(s) 134, 257
SspMI CTAG 1 cut(s) 210
SstI GAGCTC 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 88
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 155
TatI WGTACW 1 cut(s) 102
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 2 cut(s) 266, 272
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 1 cut(s) 85
TseI GCWGC 1 cut(s) 324
TspDTI ATGAA 1 cut(s) 301
TspRI CASTG 1 cut(s) 85
XhoI CTCGAG 1 cut(s) 154
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.