MD17G1163400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014773
Physical Location & Seq
Forward (+)
16177726 .. 16179161
1436 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1163400.v1.1.491

Sequence Viewer

Length: 366 bp
ATGGAGGACGATGATGAGAAAAAAGCCTACGCTTCTCCAACATCATCTCCTCCAACACCATCTCCTCCAACACCTCCCTCTCCACTTCCAATTAGTGTAGGACCCGGCAACCAAAGGTACACATTCTCGCCGTCTCCCTCCCCTTCGCTGCCTTTCTCTCAGCCTCCCTCGAGCCACGCGTCCGCGGAGAACCTCCCTCTTCTGCCTCATGGTCAGAAGCTCCCTAGTAGTCCTGCAGCACCATCACCATTCTCGTTGGATTATCAGAGACCACCCGAGGATTCGGATTCCAAAAGCTCATGCCTTGTAGACTTGTTAGCGTGGTTCATAGAAAAATGCTGCAACTGTGGTGCTAAGTCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

12.8

Weight (kDa)

4.91

Isoelectric Point (pI)

101.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014773)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37030
malus_domestica MD09G1164800.v1.1 MD17G1163400.v1.1
prunus_persica Prupe.3G022200_v2.0.a1 Prupe.3G022200_v2.0.a1
pyrus_communis pycom09g08200 pycom17g15620
rosa_chinensis RchiOBHm_Chr2g0149581
rosa_laevigata RLG00000020426
rosa_multiflora Rmu_sc0006867.1_g000022
rosa_roxburghii Rroxscaffold_2G00097950
rosa_rugosa Rorug02G0412600
rosa_samantha Rh2AG473100 Rh2BG485100 Rh2CG458900 Rh2DG494300
rosa_wichuraiana Rw2G038580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 309
AccII CGCG 2 cut(s) 179, 185
AciI CCGC 2 cut(s) 183, 185
AfaI GTAC 1 cut(s) 119
AflIII ACRYGT 1 cut(s) 177
AluBI AGCT 2 cut(s) 220, 297
AluI AGCT 2 cut(s) 220, 297
Alw26I GTCTC 2 cut(s) 138, 262
Ama87I CYCGRG 2 cut(s) 169, 275
ApeKI GCWGC 3 cut(s) 148, 236, 339
AspS9I GGNCC 1 cut(s) 101
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 237
AvaI CYCGRG 2 cut(s) 169, 275
AvaII GGWCC 1 cut(s) 101
BbvI GCAGC 3 cut(s) 135, 248, 326
BccI CCATC 2 cut(s) 67, 250
BceAI ACGGC 1 cut(s) 115
BcnI CCSGG 1 cut(s) 105
BcoDI GTCTC 2 cut(s) 138, 262
BfaI CTAG 1 cut(s) 225
BfmI CTRYAG 1 cut(s) 234
BisI GCNGC 3 cut(s) 149, 237, 340
BlsI GCNGC 3 cut(s) 150, 238, 341
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 101
BmeT110I CYCGRG 2 cut(s) 169, 275
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 262
BsaJI CCNNGG 2 cut(s) 183, 276
BsaXI ACNNNNNCTCC 4 cut(s) 31, 46, 61, 76
BseDI CCNNGG 2 cut(s) 183, 276
BseMII CTCAG 1 cut(s) 173
BseRI GAGGAG 2 cut(s) 39, 54
BseXI GCAGC 3 cut(s) 135, 248, 326
Bsh1236I CGCG 2 cut(s) 179, 185
BsiHKCI CYCGRG 2 cut(s) 169, 275
BsiSI CCGG 1 cut(s) 105
BsmAI GTCTC 2 cut(s) 138, 262
BsmBI CGTCTC 1 cut(s) 138
Bso31I GGTCTC 1 cut(s) 262
BsoBI CYCGRG 2 cut(s) 169, 275
BspACI CCGC 2 cut(s) 183, 185
BspCNI CTCAG 1 cut(s) 172
BspFNI CGCG 2 cut(s) 179, 185
BspLI GGNNCC 1 cut(s) 103
BspMAI CTGCAG 1 cut(s) 238
BspTNI GGTCTC 1 cut(s) 262
BssECI CCNNGG 2 cut(s) 183, 276
Bst4CI ACNGT 1 cut(s) 347
Bst6I CTCTTC 1 cut(s) 204
BstDEI CTNAG 3 cut(s) 159, 354, 360
BstDSI CCRYGG 1 cut(s) 183
BstFNI CGCG 2 cut(s) 179, 185
BstMAI GTCTC 2 cut(s) 138, 262
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 234
BstUI CGCG 2 cut(s) 179, 185
BstV1I GCAGC 3 cut(s) 135, 248, 326
BtgI CCRYGG 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 101
Cfr42I CCGCGG 1 cut(s) 186
CseI GACGC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 118
CviAII CATG 2 cut(s) 209, 300
CviJI RGCY 5 cut(s) 26, 163, 174, 220, 297
CviKI_1 RGCY 5 cut(s) 26, 163, 174, 220, 297
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 3 cut(s) 159, 354, 360
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 101
Eco88I CYCGRG 2 cut(s) 169, 275
EcoO109I RGGNCCY 1 cut(s) 101
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 2 cut(s) 212, 303
FaiI YATR 3 cut(s) 210, 301, 329
FatI CATG 2 cut(s) 208, 299
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 3 cut(s) 149, 237, 340
Fsp4HI GCNGC 3 cut(s) 149, 237, 340
FspBI CTAG 1 cut(s) 225
GluI GCNGC 3 cut(s) 149, 237, 340
HapII CCGG 1 cut(s) 105
HgaI GACGC 1 cut(s) 168
Hin1II CATG 2 cut(s) 212, 303
HinfI GANTC 2 cut(s) 281, 287
HpaII CCGG 1 cut(s) 105
HphI GGTGA 1 cut(s) 237
Hpy166II GTNNAC 2 cut(s) 120, 310
Hpy188I TCNGA 3 cut(s) 216, 267, 286
Hpy8I GTNNAC 2 cut(s) 120, 310
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4V TGCA 2 cut(s) 236, 342
HpyF3I CTNAG 3 cut(s) 159, 354, 360
Hsp92II CATG 2 cut(s) 212, 303
KspI CCGCGG 1 cut(s) 186
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 2 cut(s) 118, 246
Lsp1109I GCAGC 3 cut(s) 135, 248, 326
MaeI CTAG 1 cut(s) 225
MboII GAAGA 1 cut(s) 191
MluCI AATT 1 cut(s) 90
MluI ACGCGT 1 cut(s) 177
MmeI TCCRAC 4 cut(s) 62, 77, 92, 237
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 105
MvnI CGCG 2 cut(s) 179, 185
NciI CCSGG 1 cut(s) 105
NlaIII CATG 2 cut(s) 212, 303
NlaIV GGNNCC 1 cut(s) 103
PaeR7I CTCGAG 1 cut(s) 169
PcsI WCGNNNNNNNCGW 1 cut(s) 176
PfeI GAWTC 2 cut(s) 281, 287
PkrI GCNGC 3 cut(s) 150, 238, 341
PpuMI RGGWCCY 1 cut(s) 101
Psp5II RGGWCCY 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 101
PspPPI RGGWCCY 1 cut(s) 101
PspXI VCTCGAGB 1 cut(s) 169
PstI CTGCAG 1 cut(s) 238
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SacII CCGCGG 1 cut(s) 186
SatI GCNGC 3 cut(s) 149, 237, 340
Sau96I GGNCC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 105
SetI ASST 5 cut(s) 76, 119, 195, 222, 299
SfcI CTRYAG 1 cut(s) 234
Sfr274I CTCGAG 1 cut(s) 169
Sfr303I CCGCGG 1 cut(s) 186
SgrBI CCGCGG 1 cut(s) 186
SinI GGWCC 1 cut(s) 101
SlaI CTCGAG 1 cut(s) 169
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
Sse9I AATT 1 cut(s) 90
SsiI CCGC 2 cut(s) 183, 185
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 347
TaqI TCGA 1 cut(s) 170
TasI AATT 1 cut(s) 90
TfiI GAWTC 2 cut(s) 281, 287
TseI GCWGC 3 cut(s) 148, 236, 339
TspDTI ATGAA 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 101
XhoI CTCGAG 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 309
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.