Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011583

Physical Location & Seq

Genomic Coordinates Forward (+)

30230986 .. 30233751

Gene Structure 2766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38210.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGCCTTCACGTCCAAAGAAAAAACCATCAAAGAAGAAGCTCAAGCATTCCGCAGCACAACTCATCATCCACCACTCGCTACCTACCATTCAAATCCATGTCCCAGAAAGGTTTGTGGAAACTAATTCAGACGTGAAGTTTTGTTGTGAGGAAGAATTAAGTGGTTGTGAGACTGCTTCTGTGACTTGTCAAGACCATTCTTGCCATCCAAACTTAGTAGCTGAAGAGGGACAAGAGAGGAGTAAGTTTTCTGCAGATCATCATCACCAAATGGCGGATTCATCAAACGGAAACGGAAAGTTAGAGGAGAGTGAGAAAGTTCAAGAGGGTGAAGTGGTTGAATCTGTAAGGGATATAGCTATTGATGACTACTCGGTAGAGCATGCGAAAAAGACACATGAAGAGCCGGCTGAAGCTGCTGAGGAGAGTCCTGAAGTTGTGGAATCAGGAGATGTAGTGGAAGAGAAAGAAGACGAGGTTGTTCCAGTCTCGATTGTGGAGAAGGAAACTTCTGTTGTTGAACCAGAAGTGAAGGAAGAAAAGGAGGAGGAGCAATATGTGCCATCTGTGGCTGAGACAGATGGACCTTCTCCTGTTGTAGAAGATGATGTGTCAGAGGAGATTGAGGAGAAGACTAAAACAGATTTGGTCTCTAACGGGGTTGAGGAATCAACATTGCCGTCTTTGAGTGAGGTGACAACAAATGTGGTGTCGAAAGGAATTGAAGAAACTGAAGTGCCTTGTTCAGAGGAGAAGGAAGAGGAGGAAGTTGTTACAGCTGCAAAGGGAATTGAAGAAGTAAAATTGCCAGTTATTGAAGAGATTAGTACTGGGGAGTCATCAGGTGCTGATTACAAGGCAACTAGTGAAAGTGTTGATGATGAGACATTGAAACCGTCGCCTGAGGTTCCAGTTCCTCCTCCAGTTGAATCAACTGATGCTGGAGAAGGGTATGGCAAGCGTGAGATACCTGAAACTGCAGAAAAGCCGTCTATTGTATCTGTGACAAGAGCCCCCCTTCAACCAACTTCATGGAGGAGTTGTTGCGGCCTTTTTGAAGTTCTGCACCGATCTGATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

361

Amino Acids

39.43

Weight (kDa)

4.47

Isoelectric Point (pI)

68.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011583)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38210 FvH4_6g38210 FvH4_6g38210 FvH4_6g38210
malus_domestica	MD09G1152100.v1.1 MD17G1139600.v1.1
prunus_persica	Prupe.3G172400_v2.0.a1 Prupe.3G172400_v2.0.a1
pyrus_communis	pycom17g13270
rosa_chinensis	RchiOBHm_Chr2g0151471
rosa_laevigata	RLG00000020552
rosa_multiflora	Rmu_sc0000940.1_g000017
rosa_roxburghii	Rroxscaffold_2G00096440
rosa_rugosa	Rorug02G0426300 Rorug02G0426400
rosa_samantha	Rh2AG487100 Rh2BG499500 Rh2CG473500 Rh2DG510700
rosa_wichuraiana	Rw2G039920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	51, 275, 1047
AcuI	CTGAAG	4 cut(s)	243, 432, 453, 753
AfaI	GTAC	1 cut(s)	829
AfiI	CCNNNNNNNGG	1 cut(s)	274
AhlI	ACTAGT	1 cut(s)	863
AjiI	CACGTC	2 cut(s)	11, 133
AluBI	AGCT	5 cut(s)	40, 221, 359, 416, 779
AluI	AGCT	5 cut(s)	40, 221, 359, 416, 779
Alw26I	GTCTC	5 cut(s)	164, 493, 569, 655, 878
AlwNI	CAGNNNCTG	1 cut(s)	848
AoxI	GGCC	1 cut(s)	1048
ApeKI	GCWGC	3 cut(s)	53, 416, 779
ArsI	GACNNNNNNTTYG	2 cut(s)	695, 727
AspS9I	GGNCC	1 cut(s)	584
AsuHPI	GGTGA	3 cut(s)	257, 341, 706
AvaII	GGWCC	1 cut(s)	584
AxyI	CCTNAGG	1 cut(s)	903
BanII	GRGCYC	1 cut(s)	1015
BbsI	GAAGAC	2 cut(s)	477, 638
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	3 cut(s)	65, 403, 766
BccI	CCATC	4 cut(s)	34, 213, 571, 575
BceAI	ACGGC	2 cut(s)	664, 973
BcoDI	GTCTC	5 cut(s)	164, 493, 569, 655, 878
BcuI	ACTAGT	1 cut(s)	863
BfaI	CTAG	1 cut(s)	864
BfmI	CTRYAG	2 cut(s)	252, 978
BisI	GCNGC	4 cut(s)	54, 417, 780, 1048
BlsI	GCNGC	4 cut(s)	55, 418, 781, 1049
BmcAI	AGTACT	1 cut(s)	829
Bme18I	GGWCC	1 cut(s)	584
BmgBI	CACGTC	2 cut(s)	11, 133
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	1 cut(s)	909
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	1 cut(s)	928
BmuI	ACTGGG	1 cut(s)	840
BpiI	GAAGAC	2 cut(s)	477, 638
BpmI	CTGGAG	2 cut(s)	906, 963
Bpu10I	CCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	26
BsaBI	GATNNNNATC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	655
BsaXI	ACNNNNNCTCC	4 cut(s)	441, 471, 1027, 1057
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse118I	RCCGGY	1 cut(s)	406
Bse1I	ACTGG	5 cut(s)	485, 809, 835, 911, 923
Bse21I	CCTNAGG	1 cut(s)	903
Bse3DI	GCAATG	1 cut(s)	674
Bse8I	GATNNNNATC	1 cut(s)	261
BseGI	GGATG	2 cut(s)	66, 205
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	3 cut(s)	411, 564, 894
BseNI	ACTGG	5 cut(s)	485, 809, 835, 911, 923
BseXI	GCAGC	3 cut(s)	65, 403, 766
BsgI	GTGCAG	1 cut(s)	1049
BshFI	GGCC	1 cut(s)	1050
BsiSI	CCGG	1 cut(s)	407
BslFI	GGGAC	2 cut(s)	86, 243
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	5 cut(s)	164, 493, 569, 655, 878
BsmFI	GGGAC	2 cut(s)	86, 243
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	1050
Bso31I	GGTCTC	1 cut(s)	655
Bsp1286I	GDGCHC	1 cut(s)	1015
Bsp143I	GATC	2 cut(s)	256, 1070
BspACI	CCGC	3 cut(s)	51, 275, 1047
BspANI	GGCC	1 cut(s)	1050
BspCNI	CTCAG	3 cut(s)	412, 565, 895
BspLI	GGNNCC	1 cut(s)	909
BspMAI	CTGCAG	2 cut(s)	256, 982
BspQI	GCTCTTC	1 cut(s)	396
BspTNI	GGTCTC	1 cut(s)	655
BsrDI	GCAATG	1 cut(s)	674
BsrFI	RCCGGY	1 cut(s)	406
BsrI	ACTGG	5 cut(s)	485, 809, 835, 911, 923
BssAI	RCCGGY	1 cut(s)	406
BssMI	GATC	2 cut(s)	256, 1070
Bst4CI	ACNGT	1 cut(s)	897
Bst6I	CTCTTC	5 cut(s)	219, 396, 456, 753, 813
BstAPI	GCANNNNNTGC	1 cut(s)	559
BstC8I	GCNNGC	3 cut(s)	384, 408, 959
BstDEI	CTNAG	4 cut(s)	214, 420, 573, 903
BstF5I	GGATG	2 cut(s)	66, 205
BstKTI	GATC	2 cut(s)	259, 1073
BstMAI	GTCTC	5 cut(s)	164, 493, 569, 655, 878
BstMBI	GATC	2 cut(s)	256, 1070
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 559
BstNSI	RCATGY	1 cut(s)	386
BstSFI	CTRYAG	2 cut(s)	252, 978
BstV1I	GCAGC	3 cut(s)	65, 403, 766
BstV2I	GAAGAC	2 cut(s)	477, 638
BstXI	CCANNNNNNTGG	1 cut(s)	1032
Bsu36I	CCTNAGG	1 cut(s)	903
BsuRI	GGCC	1 cut(s)	1050
BtrI	CACGTC	2 cut(s)	11, 133
BtsCI	GGATG	2 cut(s)	66, 205
Cac8I	GCNNGC	3 cut(s)	384, 408, 959
CaiI	CAGNNNCTG	1 cut(s)	848
Cfr10I	RCCGGY	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	584
Csp6I	GTAC	1 cut(s)	828
CspCI	CAANNNNNGTGG	2 cut(s)	687, 722
CviAII	CATG	4 cut(s)	98, 383, 398, 1032
CviQI	GTAC	1 cut(s)	828
DdeI	CTNAG	4 cut(s)	214, 420, 573, 903
DpnI	GATC	2 cut(s)	258, 1072
DpnII	GATC	2 cut(s)	256, 1070
Eam1104I	CTCTTC	5 cut(s)	219, 396, 456, 753, 813
EarI	CTCTTC	5 cut(s)	219, 396, 456, 753, 813
EciI	GGCGGA	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	1015
Eco31I	GGTCTC	1 cut(s)	655
Eco47I	GGWCC	1 cut(s)	584
Eco57I	CTGAAG	4 cut(s)	243, 432, 453, 753
Eco81I	CCTNAGG	1 cut(s)	903
EcoT38I	GRGCYC	1 cut(s)	1015
FaeI	CATG	4 cut(s)	101, 386, 401, 1035
FaiI	YATR	7 cut(s)	99, 356, 384, 399, 558, 954, 1033
FaqI	GGGAC	2 cut(s)	86, 243
FatI	CATG	4 cut(s)	97, 382, 397, 1031
Fnu4HI	GCNGC	4 cut(s)	54, 417, 780, 1048
FokI	GGATG	2 cut(s)	53, 192
FriOI	GRGCYC	1 cut(s)	1015
Fsp4HI	GCNGC	4 cut(s)	54, 417, 780, 1048
FspBI	CTAG	1 cut(s)	864
GluI	GCNGC	4 cut(s)	54, 417, 780, 1048
GsuI	CTGGAG	2 cut(s)	906, 963
HaeIII	GGCC	1 cut(s)	1050
HapII	CCGG	1 cut(s)	407
Hin1II	CATG	4 cut(s)	101, 386, 401, 1035
HinfI	GANTC	7 cut(s)	278, 341, 427, 443, 668, 836, 929
HpaII	CCGG	1 cut(s)	407
HphI	GGTGA	3 cut(s)	257, 341, 706
Hpy188I	TCNGA	4 cut(s)	130, 616, 748, 1075
Hpy188III	TCNNGA	5 cut(s)	191, 323, 431, 447, 490
Hpy99I	CGWCG	1 cut(s)	901
HpyAV	CCTTC	7 cut(s)	15, 496, 526, 597, 748, 941, 1028
HpyCH4III	ACNGT	1 cut(s)	897
HpyCH4IV	ACGT	2 cut(s)	10, 132
HpyCH4V	TGCA	4 cut(s)	254, 782, 980, 1066
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 559
HpyF3I	CTNAG	4 cut(s)	214, 420, 573, 903
HpySE526I	ACGT	2 cut(s)	10, 132
Hsp92II	CATG	4 cut(s)	101, 386, 401, 1035
KroI	GCCGGC	1 cut(s)	406
KroNI	GCCGGC	1 cut(s)	408
Kzo9I	GATC	2 cut(s)	256, 1070
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	1 cut(s)	550
Lsp1109I	GCAGC	3 cut(s)	65, 403, 766
LweI	GCATC	1 cut(s)	928
MaeI	CTAG	1 cut(s)	864
MaeII	ACGT	2 cut(s)	10, 132
MaeIII	GTNAC	4 cut(s)	181, 694, 772, 1003
MalI	GATC	2 cut(s)	258, 1072
MboI	GATC	2 cut(s)	256, 1070
MhlI	GDGCHC	1 cut(s)	1015
MluCI	AATT	5 cut(s)	124, 155, 720, 789, 803
MlyI	GAGTC	2 cut(s)	436, 845
MroNI	GCCGGC	1 cut(s)	406
MseI	TTAA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	779
MspI	CCGG	1 cut(s)	407
Mva1269I	GAATGC	1 cut(s)	46
MwoI	GCNNNNNNNGC	2 cut(s)	416, 559
NaeI	GCCGGC	1 cut(s)	408
NdeII	GATC	2 cut(s)	256, 1070
NgoMIV	GCCGGC	1 cut(s)	406
NlaIII	CATG	4 cut(s)	101, 386, 401, 1035
NlaIV	GGNNCC	1 cut(s)	909
NmuCI	GTSAC	3 cut(s)	181, 694, 1003
NspI	RCATGY	1 cut(s)	386
PaeI	GCATGC	1 cut(s)	386
PciSI	GCTCTTC	1 cut(s)	396
PctI	GAATGC	1 cut(s)	46
PdiI	GCCGGC	1 cut(s)	408
PfeI	GAWTC	5 cut(s)	278, 341, 443, 668, 929
PkrI	GCNGC	4 cut(s)	55, 418, 781, 1049
PleI	GAGTC	2 cut(s)	435, 844
PpsI	GAGTC	2 cut(s)	435, 844
PspN4I	GGNNCC	1 cut(s)	909
PspPI	GGNCC	1 cut(s)	584
PstI	CTGCAG	2 cut(s)	256, 982
PstNI	CAGNNNCTG	1 cut(s)	848
PvuII	CAGCTG	1 cut(s)	779
RsaI	GTAC	1 cut(s)	829
RsaNI	GTAC	1 cut(s)	828
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	4 cut(s)	54, 417, 780, 1048
Sau3AI	GATC	2 cut(s)	256, 1070
Sau96I	GGNCC	1 cut(s)	584
ScaI	AGTACT	1 cut(s)	829
SchI	GAGTC	2 cut(s)	436, 845
SduI	GDGCHC	1 cut(s)	1015
SfaNI	GCATC	1 cut(s)	928
SfcI	CTRYAG	2 cut(s)	252, 978
SinI	GGWCC	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SpeI	ACTAGT	1 cut(s)	863
SphI	GCATGC	1 cut(s)	386
Sse9I	AATT	5 cut(s)	124, 155, 720, 789, 803
SsiI	CCGC	3 cut(s)	51, 275, 1047
SspMI	CTAG	1 cut(s)	864
TaaI	ACNGT	1 cut(s)	897
TaiI	ACGT	2 cut(s)	13, 135
TaqI	TCGA	2 cut(s)	491, 713
TasI	AATT	5 cut(s)	124, 155, 720, 789, 803
TatI	WGTACW	1 cut(s)	827
TauI	GCSGC	1 cut(s)	1050
TfiI	GAWTC	5 cut(s)	278, 341, 443, 668, 929
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TseFI	GTSAC	3 cut(s)	181, 694, 1003
TseI	GCWGC	3 cut(s)	53, 416, 779
Tsp45I	GTSAC	3 cut(s)	181, 694, 1003
TspDTI	ATGAA	3 cut(s)	270, 414, 1020
TspGWI	ACGGA	2 cut(s)	303, 309
VpaK11BI	GGWCC	1 cut(s)	584
XceI	RCATGY	1 cut(s)	386
XspI	CTAG	1 cut(s)	864
ZrmI	AGTACT	1 cut(s)	829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.