RLG00000020552

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011583
Physical Location & Seq
Forward (+)
66189942 .. 66192131
2190 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020552

Sequence Viewer

Length: 1134 bp
ATGCCTTCACGTCCAAAGAAAAAAGCATCAAAGAAGAAACCGAAGCATTCCACAGCACAACCCATCATCCACCACTCTCTACCTACCATTCAAATCCAAGTGCAAGAAAGTTTTGTGGAAACTAATTCAGAAGTGAAGTTTTGTTATGAGAAAGAATTAAGTGGTTGCGAGACTGCTTCTGTGACTTGTCAAGACCATTCTTCCCATCAATACTTAGCAAAAGAGGAACAAGAGACGCGGAAACTTTCTGTAGATCATCACCCAATGGCAGATTCATCAAACGGAAAGTTAGAGGAGACTCGGAAAGTTCAAGAGGGTGAAGTAGTTGAATCTGTAAGGGATATAGCTATTGATGACTCTTCGGTAGAGCATGCGAAAAAGGCCCATGAAGAGCCGGCTGAAGCTGCTGAGGAGAGTACTGAAGTGGTGGGATCGGGAGAAGTAGTGGAAAAGAAAGAAGAGAATGTTGTTCCAGTCTCGGTTGTGGAGACAGAAACTTCTGTTGTTGATGATGTTGTTGAACCAGAAGAAAAGGAAAAGGAGGAGGAGAAGCAATATGTGCCATCTGTGGATGAGACAGATGGACCTTCTCCAGTTGTGGAAGATGTTGTGCCAGAGGAGAATGAGGAAAAGACATCAACAGATTTGGTCTCTAATGGGGTTGAGGAATCAACATTGCCATCTTTGAGTGAGGACATGACGAATGCGCTGCCTTGTACAGATGAGAAGGAGGAGGAGGTTGTTCCAGCTGTAGAAGTAAAATTGCCAGTTGTTGAAGAGACTAGTACTGGGGAGTCATCAGGTGCTGATTACAAGGTAACTAGTGAAAGTGTTGATGACGATTCATCGAGACAGTCGCCTGAGGTTCCAGTTCCTCCTCCAGTTGAATCAACTGATGCCGGAGAAGAGCATGGCAAGCGTGAGATATCTGAAACCGCAGAAAATCCGTCTATTGTATCTATGATTCAAGCGATGAGTGGAACTGAACCATGCATGATGGAGCTAGCGATGGAGCTAGCACAGCAAGTCCATATAGGGAGTTGGGGTTTCAGAGTTTCGCATATTTGGTTTTGCGTGTGGAGTGAAATTTACTTATACCGGTGGCCTTGTCTTCATATTCTGCATATTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

41.75

Weight (kDa)

4.49

Isoelectric Point (pI)

62.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 238
AciI CCGC 2 cut(s) 238, 936
AclWI GGATC 1 cut(s) 439
AcsI RAATTY 1 cut(s) 1086
AcuI CTGAAG 2 cut(s) 420, 441
AfaI GTAC 3 cut(s) 418, 718, 787
AgeI ACCGGT 1 cut(s) 1098
AgsI TTSAA 7 cut(s) 92, 311, 329, 521, 776, 887, 968
AhlI ACTAGT 2 cut(s) 782, 821
AjiI CACGTC 1 cut(s) 11
AjuI GAANNNNNNNTTGG 2 cut(s) 256, 288
AluBI AGCT 5 cut(s) 347, 404, 749, 1003, 1015
AluI AGCT 5 cut(s) 347, 404, 749, 1003, 1015
Alw26I GTCTC 9 cut(s) 164, 227, 290, 481, 482, 569, 655, 773, 844
AlwI GGATC 1 cut(s) 439
AlwNI CAGNNNCTG 1 cut(s) 806
AoxI GGCC 2 cut(s) 381, 1103
ApeKI GCWGC 2 cut(s) 404, 709
ApoI RAATTY 1 cut(s) 1086
AsiGI ACCGGT 1 cut(s) 1098
AspLEI GCGC 1 cut(s) 709
AspS9I GGNCC 2 cut(s) 382, 584
AsuHPI GGTGA 2 cut(s) 251, 329
AsuNHI GCTAGC 2 cut(s) 1003, 1015
AvaII GGWCC 1 cut(s) 584
AxyI CCTNAGG 1 cut(s) 861
BbsI GAAGAC 1 cut(s) 1103
BbvCI CCTCAGC 1 cut(s) 408
BbvI GCAGC 2 cut(s) 391, 696
BccI CCATC 7 cut(s) 71, 213, 571, 575, 688, 991, 1003
BcgI CGANNNNNNTGC 2 cut(s) 691, 725
BcoDI GTCTC 9 cut(s) 164, 227, 290, 481, 482, 569, 655, 773, 844
BcuI ACTAGT 2 cut(s) 782, 821
BfaI CTAG 4 cut(s) 783, 822, 1004, 1016
BfmI CTRYAG 2 cut(s) 249, 750
BisI GCNGC 2 cut(s) 405, 710
BlsI GCNGC 2 cut(s) 406, 711
BmcAI AGTACT 2 cut(s) 418, 787
Bme18I GGWCC 1 cut(s) 584
BmgBI CACGTC 1 cut(s) 11
BmgT120I GGNCC 2 cut(s) 382, 584
BmiI GGNNCC 1 cut(s) 867
BmrI ACTGGG 1 cut(s) 798
BmsI GCATC 2 cut(s) 35, 886
BmtI GCTAGC 2 cut(s) 1007, 1019
BmuI ACTGGG 1 cut(s) 798
BpiI GAAGAC 1 cut(s) 1103
BpmI CTGGAG 2 cut(s) 576, 864
Bpu10I CCTNAGC 1 cut(s) 408
BsaI GGTCTC 1 cut(s) 655
BsaWI WCCGGW 1 cut(s) 1098
BsaXI ACNNNNNCTCC 4 cut(s) 429, 459, 1030, 1060
Bse118I RCCGGY 2 cut(s) 394, 1098
Bse1I ACTGG 6 cut(s) 473, 593, 767, 793, 869, 881
Bse21I CCTNAGG 1 cut(s) 861
Bse3DI GCAATG 1 cut(s) 674
BseGI GGATG 2 cut(s) 66, 577
BseMI GCAATG 1 cut(s) 674
BseMII CTCAG 2 cut(s) 399, 852
BseNI ACTGG 6 cut(s) 473, 593, 767, 793, 869, 881
BseRI GAGGAG 8 cut(s) 308, 425, 557, 560, 632, 746, 749, 867
BseXI GCAGC 2 cut(s) 391, 696
Bsh1236I CGCG 1 cut(s) 238
BshFI GGCC 2 cut(s) 383, 1105
BshTI ACCGGT 1 cut(s) 1098
BsiSI CCGG 3 cut(s) 395, 900, 1099
BsmAI GTCTC 9 cut(s) 164, 227, 290, 481, 482, 569, 655, 773, 844
BsmBI CGTCTC 1 cut(s) 227
BsmI GAATGC 2 cut(s) 46, 709
BsnI GGCC 2 cut(s) 383, 1105
Bso31I GGTCTC 1 cut(s) 655
Bsp1407I TGTACA 1 cut(s) 716
Bsp143I GATC 2 cut(s) 253, 431
BspACI CCGC 2 cut(s) 238, 936
BspANI GGCC 2 cut(s) 383, 1105
BspCNI CTCAG 2 cut(s) 400, 853
BspFNI CGCG 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 867
BspOI GCTAGC 2 cut(s) 1007, 1019
BspPI GGATC 1 cut(s) 439
BspQI GCTCTTC 2 cut(s) 384, 900
BspTNI GGTCTC 1 cut(s) 655
BsrDI GCAATG 1 cut(s) 674
BsrFI RCCGGY 2 cut(s) 394, 1098
BsrGI TGTACA 1 cut(s) 716
BsrI ACTGG 6 cut(s) 473, 593, 767, 793, 869, 881
BssAI RCCGGY 2 cut(s) 394, 1098
BssMI GATC 2 cut(s) 253, 431
Bst4CI ACNGT 1 cut(s) 855
Bst6I CTCTTC 5 cut(s) 364, 384, 453, 771, 900
BstAPI GCANNNNNTGC 1 cut(s) 559
BstAUI TGTACA 1 cut(s) 716
BstC8I GCNNGC 5 cut(s) 372, 396, 917, 1005, 1017
BstDEI CTNAG 3 cut(s) 214, 408, 861
BstF5I GGATG 2 cut(s) 66, 577
BstFNI CGCG 1 cut(s) 238
BstHHI GCGC 1 cut(s) 709
BstKTI GATC 2 cut(s) 256, 434
BstMAI GTCTC 9 cut(s) 164, 227, 290, 481, 482, 569, 655, 773, 844
BstMBI GATC 2 cut(s) 253, 431
BstMWI GCNNNNNNNGC 5 cut(s) 380, 404, 559, 916, 1021
BstNSI RCATGY 1 cut(s) 374
BstSFI CTRYAG 2 cut(s) 249, 750
BstUI CGCG 1 cut(s) 238
BstV1I GCAGC 2 cut(s) 391, 696
BstV2I GAAGAC 1 cut(s) 1103
Bsu36I CCTNAGG 1 cut(s) 861
BsuRI GGCC 2 cut(s) 383, 1105
BtgZI GCGATG 2 cut(s) 986, 1022
BtrI CACGTC 1 cut(s) 11
BtsCI GGATG 2 cut(s) 66, 577
Cac8I GCNNGC 5 cut(s) 372, 396, 917, 1005, 1017
CaiI CAGNNNCTG 1 cut(s) 806
CfoI GCGC 1 cut(s) 709
Cfr10I RCCGGY 2 cut(s) 394, 1098
Cfr13I GGNCC 2 cut(s) 382, 584
CseI GACGC 1 cut(s) 244
Csp6I GTAC 3 cut(s) 417, 717, 786
CspAI ACCGGT 1 cut(s) 1098
CviAII CATG 6 cut(s) 371, 386, 697, 911, 990, 994
CviJI RGCY 9 cut(s) 347, 383, 394, 398, 404, 749, 1003, 1015, 1105
CviKI_1 RGCY 9 cut(s) 347, 383, 394, 398, 404, 749, 1003, 1015, 1105
CviQI GTAC 3 cut(s) 417, 717, 786
DdeI CTNAG 3 cut(s) 214, 408, 861
DpnI GATC 2 cut(s) 255, 433
DpnII GATC 2 cut(s) 253, 431
Eam1104I CTCTTC 5 cut(s) 364, 384, 453, 771, 900
EarI CTCTTC 5 cut(s) 364, 384, 453, 771, 900
Eco31I GGTCTC 1 cut(s) 655
Eco32I GATATC 1 cut(s) 927
Eco47I GGWCC 1 cut(s) 584
Eco57I CTGAAG 2 cut(s) 420, 441
Eco81I CCTNAGG 1 cut(s) 861
EcoRV GATATC 1 cut(s) 927
EcoT22I ATGCAT 1 cut(s) 995
Esp3I CGTCTC 1 cut(s) 227
FaeI CATG 6 cut(s) 374, 389, 700, 914, 993, 997
FatI CATG 6 cut(s) 370, 385, 696, 910, 989, 993
Fnu4HI GCNGC 2 cut(s) 405, 710
FokI GGATG 2 cut(s) 53, 584
Fsp4HI GCNGC 2 cut(s) 405, 710
FspBI CTAG 4 cut(s) 783, 822, 1004, 1016
GlaI GCGC 1 cut(s) 708
GluI GCNGC 2 cut(s) 405, 710
GsuI CTGGAG 2 cut(s) 576, 864
HaeIII GGCC 2 cut(s) 383, 1105
HapII CCGG 3 cut(s) 395, 900, 1099
HgaI GACGC 1 cut(s) 244
HhaI GCGC 1 cut(s) 709
Hin1II CATG 6 cut(s) 374, 389, 700, 914, 993, 997
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HinfI GANTC 9 cut(s) 272, 298, 329, 356, 668, 794, 842, 887, 964
HpaII CCGG 3 cut(s) 395, 900, 1099
HphI GGTGA 2 cut(s) 251, 329
Hpy188I TCNGA 4 cut(s) 130, 303, 931, 1052
Hpy188III TCNNGA 4 cut(s) 191, 311, 435, 849
HpyAV CCTTC 3 cut(s) 15, 597, 721
HpyCH4III ACNGT 1 cut(s) 855
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 3 cut(s) 103, 993, 1123
HpyF10VI GCNNNNNNNGC 5 cut(s) 380, 404, 559, 916, 1021
HpyF3I CTNAG 3 cut(s) 214, 408, 861
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 6 cut(s) 374, 389, 700, 914, 993, 997
HspAI GCGC 1 cut(s) 707
KroI GCCGGC 1 cut(s) 394
KroNI GCCGGC 1 cut(s) 396
Kzo9I GATC 2 cut(s) 253, 431
LguI GCTCTTC 2 cut(s) 384, 900
LmnI GCTCC 2 cut(s) 1000, 1012
Lsp1109I GCAGC 2 cut(s) 391, 696
LweI GCATC 2 cut(s) 35, 886
MaeI CTAG 4 cut(s) 783, 822, 1004, 1016
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 2 cut(s) 181, 817
MalI GATC 2 cut(s) 255, 433
MboI GATC 2 cut(s) 253, 431
MluCI AATT 4 cut(s) 124, 155, 761, 1086
MlyI GAGTC 3 cut(s) 292, 350, 803
Mph1103I ATGCAT 1 cut(s) 995
MroNI GCCGGC 1 cut(s) 394
MseI TTAA 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 749
MspI CCGG 3 cut(s) 395, 900, 1099
Mva1269I GAATGC 2 cut(s) 46, 709
MvnI CGCG 1 cut(s) 238
MwoI GCNNNNNNNGC 5 cut(s) 380, 404, 559, 916, 1021
NaeI GCCGGC 1 cut(s) 396
NdeII GATC 2 cut(s) 253, 431
NgoMIV GCCGGC 1 cut(s) 394
NheI GCTAGC 2 cut(s) 1003, 1015
NlaIII CATG 6 cut(s) 374, 389, 700, 914, 993, 997
NlaIV GGNNCC 1 cut(s) 867
NmuCI GTSAC 1 cut(s) 181
NsiI ATGCAT 1 cut(s) 995
NspI RCATGY 1 cut(s) 374
PaeI GCATGC 1 cut(s) 374
PciSI GCTCTTC 2 cut(s) 384, 900
PctI GAATGC 2 cut(s) 46, 709
PdiI GCCGGC 1 cut(s) 396
PfeI GAWTC 6 cut(s) 272, 329, 668, 842, 887, 964
PinAI ACCGGT 1 cut(s) 1098
PkrI GCNGC 2 cut(s) 406, 711
PleI GAGTC 3 cut(s) 292, 350, 802
PpsI GAGTC 3 cut(s) 292, 350, 802
PspN4I GGNNCC 1 cut(s) 867
PspPI GGNCC 2 cut(s) 382, 584
PstNI CAGNNNCTG 1 cut(s) 806
PvuII CAGCTG 1 cut(s) 749
RsaI GTAC 3 cut(s) 418, 718, 787
RsaNI GTAC 3 cut(s) 417, 717, 786
SapI GCTCTTC 2 cut(s) 384, 900
SaqAI TTAA 1 cut(s) 158
SatI GCNGC 2 cut(s) 405, 710
Sau3AI GATC 2 cut(s) 253, 431
Sau96I GGNCC 2 cut(s) 382, 584
ScaI AGTACT 2 cut(s) 418, 787
SchI GAGTC 3 cut(s) 292, 350, 803
SfaNI GCATC 2 cut(s) 35, 886
SfcI CTRYAG 2 cut(s) 249, 750
SinI GGWCC 1 cut(s) 584
SpeI ACTAGT 2 cut(s) 782, 821
SphI GCATGC 1 cut(s) 374
Sse9I AATT 4 cut(s) 124, 155, 761, 1086
SsiI CCGC 2 cut(s) 238, 936
SspMI CTAG 4 cut(s) 783, 822, 1004, 1016
TaaI ACNGT 1 cut(s) 855
TaiI ACGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 848
TasI AATT 4 cut(s) 124, 155, 761, 1086
TatI WGTACW 3 cut(s) 416, 716, 785
TfiI GAWTC 6 cut(s) 272, 329, 668, 842, 887, 964
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 2 cut(s) 404, 709
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 4 cut(s) 264, 402, 834, 1103
TspGWI ACGGA 2 cut(s) 297, 936
VpaK11BI GGWCC 1 cut(s) 584
XapI RAATTY 1 cut(s) 1086
XceI RCATGY 1 cut(s) 374
XspI CTAG 4 cut(s) 783, 822, 1004, 1016
ZrmI AGTACT 2 cut(s) 418, 787
Zsp2I ATGCAT 1 cut(s) 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.