Rroxscaffold_2G00096440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011583
Physical Location & Seq
Reverse (-)
17672730 .. 17675192
2463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096440.1

Sequence Viewer

Length: 1068 bp
ATGCCTTCACGTCCAAAGAAAAAAGCATCAAAGAAGAAACTGAAGCATTCCACAGCACAACCCATCATCCACCACTCTCTACCTACCATTCAAATCCAAGTGCAAGAAAGTTTTGTGGAAACTAATTCAGAAGTGAAGTTTTGTTATGAGAAAGAATTAAGTGGTTGTGAGACTGCTTCTGTGACTTGTCAAGACCATTCTTCCCATCAATACTTAGCTGAAGAGGAACAAGAGACGCGGAAACTTTCTGTAGAACATCACCAAATGGCAGATTCATCAAACGGAAAGTTAGAGGAGACTCGGAAAGTTCAAGAGGGTGAAGTAGTTGAATCTGTAAGGGATATAGCTATTGATGACTCTTCGGTAGAGCATGCGAAAAAGGCCCATGAAGAGCCGGCTGAAGCTGCTGAGGAGAGTACTGAACTGGTGGGATCGGGAGAAGTAGTGGAAAAGAAAGAAGAGGATGTTGTTCCAGTCTCCGTTGTGGAGACAGAAACTTCTGTTGTTGATGATGTTGTTGAACCAGAAGAAAAGGAAAAGGAGGAGGAGAAGCAATATGTGCCATCTGTGGATGAGACAGATGGACCTTCTCCAGTTGCGGAAGATGTTGTGCCAGAGGAGATTGAGGAAAAGACATCAACAGATTTGGTCTCTAATGGGGTTGAGGAATCAACATTGCCATCTTTGAGTGAGGACATGACGAATGCGCTGTCGAAAGGAATTGAAGAAACCGAAGTGCCTTGTTCAGATGAGAAGGAGGAGGAGGTTGTTCCAGCTGTAGAAGTAAAATTGCCAGTTGTTGAAGAGACTAGTACTGGGGAGTCGTCAGGTGCTGATTACAATTTAACTAGTGAAAGTGTTGATGACGATTCATCGAAACAGTCGCCTGAGGTTCCAGTTCCTCCTCCAGTTGAATCAACTGATGCCGGAGAAGAGTATGGCAAGCGTGAGATATCTGAAACCGCAGAAAATCCGTCTATTGTATCTGTGACTAGAGCTCCCCTGCAACCAACTTCATGGAGGAGTTGTTGTGGACTTTTTGAAGTTCTGCGGCGATCTGAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

39.02

Weight (kDa)

4.39

Isoelectric Point (pI)

67.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 238
AciI CCGC 4 cut(s) 238, 599, 963, 1051
AclWI GGATC 1 cut(s) 439
AcuI CTGAAG 3 cut(s) 62, 240, 420
AfaI GTAC 2 cut(s) 418, 814
AgsI TTSAA 8 cut(s) 92, 311, 329, 521, 725, 803, 914, 1043
AhlI ACTAGT 2 cut(s) 809, 848
AjiI CACGTC 1 cut(s) 11
AluBI AGCT 5 cut(s) 218, 347, 404, 776, 998
AluI AGCT 5 cut(s) 218, 347, 404, 776, 998
Alw21I GWGCWC 1 cut(s) 1000
Alw26I GTCTC 8 cut(s) 164, 227, 290, 481, 482, 569, 655, 800
AlwI GGATC 1 cut(s) 439
AlwNI CAGNNNCTG 1 cut(s) 833
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 1 cut(s) 404
ArsI GACNNNNNNTTYG 2 cut(s) 695, 727
AspLEI GCGC 1 cut(s) 709
AspS9I GGNCC 2 cut(s) 382, 584
AsuHPI GGTGA 2 cut(s) 251, 329
AvaII GGWCC 1 cut(s) 584
AxyI CCTNAGG 1 cut(s) 888
BanII GRGCYC 1 cut(s) 1000
Bbv12I GWGCWC 1 cut(s) 1000
BbvCI CCTCAGC 1 cut(s) 408
BbvI GCAGC 1 cut(s) 391
BccI CCATC 5 cut(s) 71, 213, 571, 575, 688
BcoDI GTCTC 8 cut(s) 164, 227, 290, 481, 482, 569, 655, 800
BcuI ACTAGT 2 cut(s) 809, 848
BfaI CTAG 3 cut(s) 810, 849, 993
BfmI CTRYAG 2 cut(s) 249, 777
BisI GCNGC 2 cut(s) 405, 1052
BlsI GCNGC 2 cut(s) 406, 1053
BmcAI AGTACT 2 cut(s) 418, 814
Bme18I GGWCC 1 cut(s) 584
BmgBI CACGTC 1 cut(s) 11
BmgT120I GGNCC 2 cut(s) 382, 584
BmiI GGNNCC 1 cut(s) 894
BmrI ACTGGG 1 cut(s) 825
BmsI GCATC 2 cut(s) 35, 913
BmuI ACTGGG 1 cut(s) 825
BpmI CTGGAG 2 cut(s) 576, 891
Bpu10I CCTNAGC 1 cut(s) 408
BsaI GGTCTC 1 cut(s) 655
BsaXI ACNNNNNCTCC 8 cut(s) 429, 459, 982, 1012, 1012, 1015, 1042, 1045
Bse118I RCCGGY 1 cut(s) 394
Bse1I ACTGG 7 cut(s) 429, 473, 593, 794, 820, 896, 908
Bse21I CCTNAGG 1 cut(s) 888
Bse3DI GCAATG 1 cut(s) 674
BseGI GGATG 3 cut(s) 66, 469, 577
BseMI GCAATG 1 cut(s) 674
BseMII CTCAG 3 cut(s) 399, 879, 1050
BseNI ACTGG 7 cut(s) 429, 473, 593, 794, 820, 896, 908
BseRI GAGGAG 9 cut(s) 308, 425, 557, 560, 632, 773, 776, 894, 1036
BseXI GCAGC 1 cut(s) 391
Bsh1236I CGCG 1 cut(s) 238
BshFI GGCC 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 1000
BsiSI CCGG 2 cut(s) 395, 927
BsmAI GTCTC 8 cut(s) 164, 227, 290, 481, 482, 569, 655, 800
BsmBI CGTCTC 1 cut(s) 227
BsmI GAATGC 2 cut(s) 46, 709
BsnI GGCC 1 cut(s) 383
Bso31I GGTCTC 1 cut(s) 655
Bsp1286I GDGCHC 1 cut(s) 1000
Bsp143I GATC 2 cut(s) 431, 1055
BspACI CCGC 4 cut(s) 238, 599, 963, 1051
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 3 cut(s) 400, 880, 1051
BspFNI CGCG 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 894
BspPI GGATC 1 cut(s) 439
BspQI GCTCTTC 1 cut(s) 384
BspTNI GGTCTC 1 cut(s) 655
BsrDI GCAATG 1 cut(s) 674
BsrFI RCCGGY 1 cut(s) 394
BsrI ACTGG 7 cut(s) 429, 473, 593, 794, 820, 896, 908
BssAI RCCGGY 1 cut(s) 394
BssMI GATC 2 cut(s) 431, 1055
Bst4CI ACNGT 1 cut(s) 882
Bst6I CTCTTC 6 cut(s) 216, 364, 384, 453, 798, 927
BstAPI GCANNNNNTGC 1 cut(s) 559
BstC8I GCNNGC 3 cut(s) 372, 396, 944
BstDEI CTNAG 4 cut(s) 214, 408, 888, 1059
BstF5I GGATG 3 cut(s) 66, 469, 577
BstFNI CGCG 1 cut(s) 238
BstHHI GCGC 1 cut(s) 709
BstKTI GATC 2 cut(s) 434, 1058
BstMAI GTCTC 8 cut(s) 164, 227, 290, 481, 482, 569, 655, 800
BstMBI GATC 2 cut(s) 431, 1055
BstMWI GCNNNNNNNGC 3 cut(s) 380, 404, 559
BstNSI RCATGY 1 cut(s) 374
BstSFI CTRYAG 2 cut(s) 249, 777
BstUI CGCG 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 391
BstXI CCANNNNNNTGG 1 cut(s) 1017
Bsu36I CCTNAGG 1 cut(s) 888
BsuRI GGCC 1 cut(s) 383
BtrI CACGTC 1 cut(s) 11
BtsCI GGATG 3 cut(s) 66, 469, 577
Cac8I GCNNGC 3 cut(s) 372, 396, 944
CaiI CAGNNNCTG 1 cut(s) 833
CfoI GCGC 1 cut(s) 709
Cfr10I RCCGGY 1 cut(s) 394
Cfr13I GGNCC 2 cut(s) 382, 584
CseI GACGC 1 cut(s) 244
Csp6I GTAC 2 cut(s) 417, 813
CviAII CATG 4 cut(s) 371, 386, 697, 1017
CviJI RGCY 8 cut(s) 218, 347, 383, 394, 398, 404, 776, 998
CviKI_1 RGCY 8 cut(s) 218, 347, 383, 394, 398, 404, 776, 998
CviQI GTAC 2 cut(s) 417, 813
DdeI CTNAG 4 cut(s) 214, 408, 888, 1059
DpnI GATC 2 cut(s) 433, 1057
DpnII GATC 2 cut(s) 431, 1055
Eam1104I CTCTTC 6 cut(s) 216, 364, 384, 453, 798, 927
EarI CTCTTC 6 cut(s) 216, 364, 384, 453, 798, 927
Ecl136II GAGCTC 1 cut(s) 998
Eco24I GRGCYC 1 cut(s) 1000
Eco31I GGTCTC 1 cut(s) 655
Eco32I GATATC 1 cut(s) 954
Eco47I GGWCC 1 cut(s) 584
Eco53kI GAGCTC 1 cut(s) 998
Eco57I CTGAAG 3 cut(s) 62, 240, 420
Eco81I CCTNAGG 1 cut(s) 888
EcoICRI GAGCTC 1 cut(s) 998
EcoRV GATATC 1 cut(s) 954
EcoT38I GRGCYC 1 cut(s) 1000
Esp3I CGTCTC 1 cut(s) 227
FaeI CATG 4 cut(s) 374, 389, 700, 1020
FaiI YATR 8 cut(s) 147, 344, 372, 387, 558, 698, 939, 1018
FatI CATG 4 cut(s) 370, 385, 696, 1016
Fnu4HI GCNGC 2 cut(s) 405, 1052
FokI GGATG 3 cut(s) 53, 476, 584
FriOI GRGCYC 1 cut(s) 1000
Fsp4HI GCNGC 2 cut(s) 405, 1052
FspBI CTAG 3 cut(s) 810, 849, 993
GlaI GCGC 1 cut(s) 708
GluI GCNGC 2 cut(s) 405, 1052
GsuI CTGGAG 2 cut(s) 576, 891
HaeIII GGCC 1 cut(s) 383
HapII CCGG 2 cut(s) 395, 927
HgaI GACGC 1 cut(s) 244
HhaI GCGC 1 cut(s) 709
Hin1II CATG 4 cut(s) 374, 389, 700, 1020
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HinfI GANTC 8 cut(s) 272, 298, 329, 356, 668, 821, 869, 914
HpaII CCGG 2 cut(s) 395, 927
HphI GGTGA 2 cut(s) 251, 329
Hpy166II GTNNAC 1 cut(s) 1034
Hpy188I TCNGA 5 cut(s) 130, 303, 748, 958, 1060
Hpy188III TCNNGA 3 cut(s) 191, 311, 435
Hpy8I GTNNAC 1 cut(s) 1034
HpyAV CCTTC 3 cut(s) 15, 597, 748
HpyCH4III ACNGT 1 cut(s) 882
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 103, 1006
HpyF10VI GCNNNNNNNGC 3 cut(s) 380, 404, 559
HpyF3I CTNAG 4 cut(s) 214, 408, 888, 1059
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 4 cut(s) 374, 389, 700, 1020
HspAI GCGC 1 cut(s) 707
KroI GCCGGC 1 cut(s) 394
KroNI GCCGGC 1 cut(s) 396
Kzo9I GATC 2 cut(s) 431, 1055
LguI GCTCTTC 1 cut(s) 384
LmnI GCTCC 1 cut(s) 1003
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 2 cut(s) 35, 913
MaeI CTAG 3 cut(s) 810, 849, 993
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 2 cut(s) 181, 988
MalI GATC 2 cut(s) 433, 1057
MboI GATC 2 cut(s) 431, 1055
MhlI GDGCHC 1 cut(s) 1000
MluCI AATT 5 cut(s) 124, 155, 720, 788, 841
MlyI GAGTC 3 cut(s) 292, 350, 830
MroNI GCCGGC 1 cut(s) 394
MseI TTAA 2 cut(s) 158, 845
MspA1I CMGCKG 1 cut(s) 776
MspI CCGG 2 cut(s) 395, 927
Mva1269I GAATGC 2 cut(s) 46, 709
MvnI CGCG 1 cut(s) 238
MwoI GCNNNNNNNGC 3 cut(s) 380, 404, 559
NaeI GCCGGC 1 cut(s) 396
NdeII GATC 2 cut(s) 431, 1055
NgoMIV GCCGGC 1 cut(s) 394
NlaIII CATG 4 cut(s) 374, 389, 700, 1020
NlaIV GGNNCC 1 cut(s) 894
NmuCI GTSAC 2 cut(s) 181, 988
NspI RCATGY 1 cut(s) 374
PaeI GCATGC 1 cut(s) 374
PciSI GCTCTTC 1 cut(s) 384
PctI GAATGC 2 cut(s) 46, 709
PdiI GCCGGC 1 cut(s) 396
PfeI GAWTC 5 cut(s) 272, 329, 668, 869, 914
PkrI GCNGC 2 cut(s) 406, 1053
PleI GAGTC 3 cut(s) 292, 350, 829
PpsI GAGTC 3 cut(s) 292, 350, 829
Psp124BI GAGCTC 1 cut(s) 1000
PspN4I GGNNCC 1 cut(s) 894
PspPI GGNCC 2 cut(s) 382, 584
PstNI CAGNNNCTG 1 cut(s) 833
PvuII CAGCTG 1 cut(s) 776
RsaI GTAC 2 cut(s) 418, 814
RsaNI GTAC 2 cut(s) 417, 813
SacI GAGCTC 1 cut(s) 1000
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 2 cut(s) 158, 845
SatI GCNGC 2 cut(s) 405, 1052
Sau3AI GATC 2 cut(s) 431, 1055
Sau96I GGNCC 2 cut(s) 382, 584
ScaI AGTACT 2 cut(s) 418, 814
SchI GAGTC 3 cut(s) 292, 350, 830
SduI GDGCHC 1 cut(s) 1000
SfaNI GCATC 2 cut(s) 35, 913
SfcI CTRYAG 2 cut(s) 249, 777
SinI GGWCC 1 cut(s) 584
SpeI ACTAGT 2 cut(s) 809, 848
SphI GCATGC 1 cut(s) 374
Sse9I AATT 5 cut(s) 124, 155, 720, 788, 841
SsiI CCGC 4 cut(s) 238, 599, 963, 1051
SspMI CTAG 3 cut(s) 810, 849, 993
SstI GAGCTC 1 cut(s) 1000
TaaI ACNGT 1 cut(s) 882
TaiI ACGT 1 cut(s) 13
TaqI TCGA 2 cut(s) 713, 875
TasI AATT 5 cut(s) 124, 155, 720, 788, 841
TatI WGTACW 2 cut(s) 416, 812
TauI GCSGC 1 cut(s) 1054
TfiI GAWTC 5 cut(s) 272, 329, 668, 869, 914
Tru1I TTAA 2 cut(s) 158, 845
Tru9I TTAA 2 cut(s) 158, 845
TseFI GTSAC 2 cut(s) 181, 988
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 2 cut(s) 181, 988
TspDTI ATGAA 4 cut(s) 264, 402, 861, 1005
TspGWI ACGGA 3 cut(s) 297, 469, 963
VpaK11BI GGWCC 1 cut(s) 584
XceI RCATGY 1 cut(s) 374
XspI CTAG 3 cut(s) 810, 849, 993
ZrmI AGTACT 2 cut(s) 418, 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.