Prupe.3G172400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011583
Physical Location & Seq
Forward (+)
19053628 .. 19056417
2790 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G172400.1

Sequence Viewer

Length: 990 bp
ATGCCTTCACGTTCGCATTCACGTCCAAAGAAAACCACTTCAAAATCTGCTAAGAAACAAATGACGCGAACCAAAGAATCCATCCACCAGTCTCCACCTATCCTTCATGTCCAAGGAGGAGAAGAAGAAGAGAGACGGAAAGTTTCCGCAGATCTTAACCAAATGGCGGATTCTTCAAACGGGAATTTAGAGGAGACCCTGAAAGTTCAACCAGATGATGAAGTTAAGGTGGTTGAATCTGTGACGGACATAGTTATTGATGATTATTCTGCGGCTGGAAAGAAAACCCATGACGGTGATGATTCGGGTTCGAGTAGTAGCAGTTCGGATGAAGAGACAGAAGCTGGTGAGAAGAGTGCTAAAGTGGCGGATTCAGGGGAAGTGGAGGAGACGAAAGAAGTTTCCGTAGTGGTTGTTGAGACTGTTGAATCTCTGTCCAACCATTTGGATCAAGGTGTTGTTGATGATTTGGAAGCTGTGAAGGAAGAAGAGGAGAAAGTTTTGGTATCTGTCGACGGGACCTATGAATCTTCTCCGGCCATAACAGATTTGGTGTCAGAGCAGATTGAGGAAAAAACATTGACATATTTGGATGAGAGCAATGGGGTTTCTTTAGCTGAAACAGATTTGGTGTCCAAGGAGGTTGAGGAACCAGCATTGCCTTCTTTGAGTGAGCATGATGAGCCTGCTCCAGTCATAACAGATGTTGAAGAAAAGAGTGAGGTTGTAGATGTGGTGTCAAAGGGAATTGAAGAGACAATTGGAGAGTCATCTAGTGAGAATGTTGTTGATGGATCCTCGAAGCCGTCGCCTGATCAGGTTCCTCCTCCACTTGAATCAGCTGATGCTGGAGAAGAGTATGGGAAGCCTGTGATTCCTGAAAGCACCGGAAATCCGCCTATTGTCTCTGTCACTGGACGCCCCCTGCAACCAACTTCATGGAAGAGTTGCTGTGGACTTTTCGAAGTTCTGCATCGATCCAATCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

330

Amino Acids

35.34

Weight (kDa)

4.36

Isoelectric Point (pI)

59.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 513
AccII CGCG 1 cut(s) 67
AciI CCGC 5 cut(s) 147, 167, 272, 368, 896
AclWI GGATC 4 cut(s) 456, 789, 802, 972
AcoI YGGCCR 1 cut(s) 537
AcsI RAATTY 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 919
AfiI CCNNNNNNNGG 1 cut(s) 166
AgsI TTSAA 8 cut(s) 42, 177, 209, 236, 428, 710, 752, 836
AjiI CACGTC 1 cut(s) 23
AjuI GAANNNNNNNTTGG 2 cut(s) 744, 776
AluBI AGCT 4 cut(s) 344, 476, 617, 842
AluI AGCT 4 cut(s) 344, 476, 617, 842
Alw26I GTCTC 8 cut(s) 96, 127, 188, 329, 383, 413, 749, 910
AlwI GGATC 4 cut(s) 456, 789, 802, 972
AlwNI CAGNNNCTG 1 cut(s) 344
AoxI GGCC 1 cut(s) 537
ApoI RAATTY 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 519
AsuHPI GGTGA 2 cut(s) 308, 359
AsuII TTCGAA 1 cut(s) 963
AvaII GGWCC 1 cut(s) 519
BamHI GGATCC 1 cut(s) 794
BccI CCATC 2 cut(s) 89, 785
BceAI ACGGC 1 cut(s) 790
BclI TGATCA 1 cut(s) 814
BcoDI GTCTC 8 cut(s) 96, 127, 188, 329, 383, 413, 749, 910
BfaI CTAG 1 cut(s) 774
BglII AGATCT 1 cut(s) 151
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme18I GGWCC 1 cut(s) 519
BmgBI CACGTC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 519
BmiI GGNNCC 4 cut(s) 520, 651, 796, 822
BmsI GCATC 2 cut(s) 835, 982
BpmI CTGGAG 2 cut(s) 675, 870
Bpu14I TTCGAA 1 cut(s) 963
Bsa29I ATCGAT 2 cut(s) 976, 985
BsaHI GRCGYC 1 cut(s) 919
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 112, 636
BsaWI WCCGGW 1 cut(s) 887
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse1I ACTGG 3 cut(s) 88, 692, 919
Bse3DI GCAATG 2 cut(s) 607, 656
BseCI ATCGAT 2 cut(s) 976, 985
BseDI CCNNGG 2 cut(s) 112, 636
BseGI GGATG 3 cut(s) 81, 334, 598
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMI GCAATG 2 cut(s) 607, 656
BseNI ACTGG 3 cut(s) 88, 692, 919
BseRI GAGGAG 5 cut(s) 132, 206, 401, 506, 816
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 1 cut(s) 539
BshVI ATCGAT 2 cut(s) 976, 985
BsiSI CCGG 2 cut(s) 536, 888
BslFI GGGAC 1 cut(s) 532
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 8 cut(s) 96, 127, 188, 329, 383, 413, 749, 910
BsmBI CGTCTC 2 cut(s) 127, 383
BsmFI GGGAC 1 cut(s) 532
BsmI GAATGC 1 cut(s) 16
BsnI GGCC 1 cut(s) 539
Bso31I GGTCTC 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 963
Bsp143I GATC 5 cut(s) 151, 448, 794, 814, 977
BspACI CCGC 5 cut(s) 147, 167, 272, 368, 896
BspANI GGCC 1 cut(s) 539
BspDI ATCGAT 2 cut(s) 976, 985
BspFNI CGCG 1 cut(s) 67
BspLI GGNNCC 4 cut(s) 520, 651, 796, 822
BspPI GGATC 4 cut(s) 456, 789, 802, 972
BspT104I TTCGAA 1 cut(s) 963
BspTNI GGTCTC 1 cut(s) 188
BsrDI GCAATG 2 cut(s) 607, 656
BsrI ACTGG 3 cut(s) 88, 692, 919
BssECI CCNNGG 2 cut(s) 112, 636
BssMI GATC 5 cut(s) 151, 448, 794, 814, 977
BssNI GRCGYC 1 cut(s) 919
BssT1I CCWWGG 2 cut(s) 112, 636
Bst4CI ACNGT 2 cut(s) 296, 424
Bst6I CTCTTC 7 cut(s) 123, 327, 347, 483, 747, 849, 938
BstACI GRCGYC 1 cut(s) 919
BstBI TTCGAA 1 cut(s) 963
BstC8I GCNNGC 1 cut(s) 687
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 3 cut(s) 81, 334, 598
BstFNI CGCG 1 cut(s) 67
BstKTI GATC 5 cut(s) 154, 451, 797, 817, 980
BstMAI GTCTC 8 cut(s) 96, 127, 188, 329, 383, 413, 749, 910
BstMBI GATC 5 cut(s) 151, 448, 794, 814, 977
BstMWI GCNNNNNNNGC 2 cut(s) 365, 682
BstUI CGCG 1 cut(s) 67
BstX2I RGATCY 2 cut(s) 151, 794
BstXI CCANNNNNNTGG 2 cut(s) 445, 939
BstYI RGATCY 2 cut(s) 151, 794
Bsu15I ATCGAT 2 cut(s) 976, 985
BsuRI GGCC 1 cut(s) 539
BsuTUI ATCGAT 2 cut(s) 976, 985
BtrI CACGTC 1 cut(s) 23
BtsCI GGATG 3 cut(s) 81, 334, 598
BtsIMutI CAGTG 1 cut(s) 912
Cac8I GCNNGC 1 cut(s) 687
CaiI CAGNNNCTG 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 519
ClaI ATCGAT 2 cut(s) 976, 985
CseI GACGC 2 cut(s) 73, 927
CviAII CATG 4 cut(s) 107, 290, 677, 939
CviJI RGCY 9 cut(s) 275, 344, 476, 539, 617, 685, 805, 842, 868
CviKI_1 RGCY 9 cut(s) 275, 344, 476, 539, 617, 685, 805, 842, 868
DdeI CTNAG 1 cut(s) 51
DpnI GATC 5 cut(s) 153, 450, 796, 816, 979
DpnII GATC 5 cut(s) 151, 448, 794, 814, 977
EaeI YGGCCR 1 cut(s) 537
Eam1104I CTCTTC 7 cut(s) 123, 327, 347, 483, 747, 849, 938
EarI CTCTTC 7 cut(s) 123, 327, 347, 483, 747, 849, 938
EciI GGCGGA 3 cut(s) 182, 383, 885
Eco130I CCWWGG 2 cut(s) 112, 636
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 519
EcoO109I RGGNCCY 1 cut(s) 519
EcoT14I CCWWGG 2 cut(s) 112, 636
ErhI CCWWGG 2 cut(s) 112, 636
Esp3I CGTCTC 2 cut(s) 127, 383
FaeI CATG 4 cut(s) 110, 293, 680, 942
FaqI GGGAC 1 cut(s) 532
FatI CATG 4 cut(s) 106, 289, 676, 938
FbaI TGATCA 1 cut(s) 814
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 3 cut(s) 68, 341, 605
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 1 cut(s) 774
GluI GCNGC 1 cut(s) 273
GsuI CTGGAG 2 cut(s) 675, 870
HaeIII GGCC 1 cut(s) 539
HapII CCGG 2 cut(s) 536, 888
HgaI GACGC 2 cut(s) 73, 927
Hin1I GRCGYC 1 cut(s) 919
Hin1II CATG 4 cut(s) 110, 293, 680, 942
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HpaII CCGG 2 cut(s) 536, 888
HphI GGTGA 2 cut(s) 308, 359
Hpy166II GTNNAC 2 cut(s) 514, 956
Hpy188I TCNGA 2 cut(s) 328, 559
Hpy188III TCNNGA 1 cut(s) 878
Hpy8I GTNNAC 2 cut(s) 514, 956
Hpy99I CGWCG 2 cut(s) 518, 811
HpyAV CCTTC 4 cut(s) 15, 113, 475, 672
HpyCH4III ACNGT 2 cut(s) 296, 424
HpyCH4IV ACGT 2 cut(s) 10, 22
HpyCH4V TGCA 2 cut(s) 928, 973
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 682
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 2 cut(s) 10, 22
Hsp92I GRCGYC 1 cut(s) 919
Hsp92II CATG 4 cut(s) 110, 293, 680, 942
Ksp22I TGATCA 1 cut(s) 814
Kzo9I GATC 5 cut(s) 151, 448, 794, 814, 977
LmnI GCTCC 1 cut(s) 694
LweI GCATC 2 cut(s) 835, 982
MaeI CTAG 1 cut(s) 774
MaeII ACGT 2 cut(s) 10, 22
MaeIII GTNAC 2 cut(s) 241, 910
MalI GATC 5 cut(s) 153, 450, 796, 816, 979
MboI GATC 5 cut(s) 151, 448, 794, 814, 977
MfeI CAATTG 1 cut(s) 759
MflI RGATCY 2 cut(s) 151, 794
MluCI AATT 3 cut(s) 184, 747, 759
MlyI GAGTC 1 cut(s) 776
MmeI TCCRAC 1 cut(s) 462
MseI TTAA 2 cut(s) 156, 225
MslI CAYNNNNRTG 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 842
MspI CCGG 2 cut(s) 536, 888
MunI CAATTG 1 cut(s) 759
Mva1269I GAATGC 1 cut(s) 16
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 365, 682
NdeII GATC 5 cut(s) 151, 448, 794, 814, 977
NlaIII CATG 4 cut(s) 110, 293, 680, 942
NlaIV GGNNCC 4 cut(s) 520, 651, 796, 822
NmuCI GTSAC 2 cut(s) 241, 910
NspV TTCGAA 1 cut(s) 963
PcsI WCGNNNNNNNCGW 1 cut(s) 982
PctI GAATGC 1 cut(s) 16
PfeI GAWTC 9 cut(s) 77, 170, 236, 302, 371, 428, 527, 836, 874
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 1 cut(s) 775
PpsI GAGTC 1 cut(s) 775
PpuMI RGGWCCY 1 cut(s) 519
Psp5II RGGWCCY 1 cut(s) 519
PspN4I GGNNCC 4 cut(s) 520, 651, 796, 822
PspPI GGNCC 1 cut(s) 519
PspPPI RGGWCCY 1 cut(s) 519
PsrI GAACNNNNNNTAC 2 cut(s) 307, 339
PstNI CAGNNNCTG 1 cut(s) 344
PsuI RGATCY 2 cut(s) 151, 794
PvuII CAGCTG 1 cut(s) 842
RseI CAYNNNNRTG 1 cut(s) 294
SalI GTCGAC 1 cut(s) 512
SaqAI TTAA 2 cut(s) 156, 225
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 5 cut(s) 151, 448, 794, 814, 977
Sau96I GGNCC 1 cut(s) 519
SchI GAGTC 1 cut(s) 776
SfaNI GCATC 2 cut(s) 835, 982
SfuI TTCGAA 1 cut(s) 963
SinI GGWCC 1 cut(s) 519
SmiMI CAYNNNNRTG 1 cut(s) 294
Sse9I AATT 3 cut(s) 184, 747, 759
SsiI CCGC 5 cut(s) 147, 167, 272, 368, 896
SspMI CTAG 1 cut(s) 774
StyI CCWWGG 2 cut(s) 112, 636
TaaI ACNGT 2 cut(s) 296, 424
TaiI ACGT 2 cut(s) 13, 25
TaqI TCGA 6 cut(s) 311, 513, 800, 963, 976, 985
TasI AATT 3 cut(s) 184, 747, 759
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 9 cut(s) 77, 170, 236, 302, 371, 428, 527, 836, 874
Tru1I TTAA 2 cut(s) 156, 225
Tru9I TTAA 2 cut(s) 156, 225
TscAI CASTG 1 cut(s) 919
TseFI GTSAC 2 cut(s) 241, 910
Tsp45I GTSAC 2 cut(s) 241, 910
TspDTI ATGAA 5 cut(s) 95, 234, 345, 540, 927
TspGWI ACGGA 3 cut(s) 151, 260, 394
TspRI CASTG 1 cut(s) 919
VpaK11BI GGWCC 1 cut(s) 519
XapI RAATTY 1 cut(s) 184
XcmI CCANNNNNNNNNTGG 1 cut(s) 547
XmiI GTMKAC 1 cut(s) 513
XspI CTAG 1 cut(s) 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.