RchiOBHm_Chr2g0151471

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011583
Physical Location & Seq
Forward (+)
69063700 .. 69066297
2598 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52067

Sequence Viewer

Length: 1077 bp
ATGCCTTCACGTCCAAAGAAAAAAGCATCAAAGAAGAAACTGAAGCATTCCACAGCACAACCCATCATCCACCACTCTCTACCTACCATTCAAATCCAAGTGCAAGAAAGTTTTGTGGAAACTAATTCAGAAGTGAAGTTTTGTTATGAGAAAGAATTAAGTGGTTGTGAGACTGCTTCTGTGACTTGTCAAGACCATTCTTCGCATCAATACTTAGCTGAAGAGGAACAAGAGACGCGGAAACTTTCTGTAGATCATCACCAAATGGCAGATTCATCAAACGGAAAGTTAGAGGAGACTCGGAAAGTTCAAGAGGGTGAAGTAGTTGAATCTGTAAGGGATATAGCTATTGATGACTCTTCGGTAGAGCATGCGAAAAAGGCCCATGAAGAGCCGGCTGAAGCTGCTGAGGAGAGTACTGTAGTGGTGGGATTGGGAGAAGTAGTCGAAAATAAAGAAGAGGATGTTGTTCCAGTCTCGGTTGTGGAGACAGAAACTTCTGTTGTTGATGATGTTGTTGAACCAGAAGAGAAGGAAAAGGAGGAGGAGAAGCAATATGTGCCATCTGTGGATGAGACAGATGGACCTTCTCCAGTTGTGGAAAATGTTGTGCCAGAGGAGATTGAGGAAAAGACATCAACAGATTTGGTCTCTAATGGGGTTGAGGAATCAACATTGCCATCTTTGAGTGAGGACATGACGAATGCGCTGTCGAAAGGAATTGAAGAAACCGAAGTGCCTTGTTCAGATGAGAAGGAGGAGGAGGTTGTTCCAACTGTAGAAGTAAAATTGCCAGTTGTTGAAGAGACTAGTACTGGGGAGTCATCAGGTGCTGATTACATGGTAACTAGTGAAAGTGTTGATGACGATTCATCGAAACAGTCGAAACAGTCGCCTGAGGTTCCAGTTTCTCCTCCAGTTGAATCAATTGATGCCGGAGAAGAGTATGGCAAGCCTGAGATATCTGAAACCGCAGAAAATCCGTCTATTGTATCTGTGACTAGAGCTCCCCTGCAACCAACTTCATGGAGGAGTTGTTGTGGACTTTTTGAAGTTCTGCGCCGATCAGATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

358

Amino Acids

39.31

Weight (kDa)

4.39

Isoelectric Point (pI)

67.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 238
AciI CCGC 2 cut(s) 238, 972
AcuI CTGAAG 3 cut(s) 62, 240, 420
AfaI GTAC 2 cut(s) 418, 814
AgsI TTSAA 8 cut(s) 92, 311, 329, 521, 725, 803, 923, 1052
AhlI ACTAGT 2 cut(s) 809, 848
AjiI CACGTC 1 cut(s) 11
AluBI AGCT 4 cut(s) 218, 347, 404, 1007
AluI AGCT 4 cut(s) 218, 347, 404, 1007
Alw21I GWGCWC 1 cut(s) 1009
Alw26I GTCTC 8 cut(s) 164, 227, 290, 481, 482, 569, 655, 800
AlwNI CAGNNNCTG 1 cut(s) 833
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 1 cut(s) 404
ArsI GACNNNNNNTTYG 2 cut(s) 695, 727
AspLEI GCGC 2 cut(s) 709, 1062
AspS9I GGNCC 2 cut(s) 382, 584
AsuHPI GGTGA 2 cut(s) 251, 329
AvaII GGWCC 1 cut(s) 584
AxyI CCTNAGG 1 cut(s) 897
BanII GRGCYC 1 cut(s) 1009
Bbv12I GWGCWC 1 cut(s) 1009
BbvCI CCTCAGC 1 cut(s) 408
BbvI GCAGC 1 cut(s) 391
BccI CCATC 4 cut(s) 71, 571, 575, 688
BcoDI GTCTC 8 cut(s) 164, 227, 290, 481, 482, 569, 655, 800
BcuI ACTAGT 2 cut(s) 809, 848
BfaI CTAG 3 cut(s) 810, 849, 1002
BfmI CTRYAG 3 cut(s) 249, 420, 777
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
BmcAI AGTACT 2 cut(s) 418, 814
Bme18I GGWCC 1 cut(s) 584
BmgBI CACGTC 1 cut(s) 11
BmgT120I GGNCC 2 cut(s) 382, 584
BmiI GGNNCC 1 cut(s) 903
BmrI ACTGGG 1 cut(s) 825
BmsI GCATC 3 cut(s) 35, 214, 922
BmuI ACTGGG 1 cut(s) 825
BpmI CTGGAG 2 cut(s) 576, 900
Bpu10I CCTNAGC 1 cut(s) 408
BsaI GGTCTC 1 cut(s) 655
BsaXI ACNNNNNCTCC 8 cut(s) 429, 459, 991, 1021, 1021, 1024, 1051, 1054
Bse118I RCCGGY 1 cut(s) 394
Bse1I ACTGG 6 cut(s) 473, 593, 794, 820, 905, 917
Bse21I CCTNAGG 1 cut(s) 897
Bse3DI GCAATG 1 cut(s) 674
BseGI GGATG 3 cut(s) 66, 469, 577
BseMI GCAATG 1 cut(s) 674
BseMII CTCAG 3 cut(s) 399, 888, 948
BseNI ACTGG 6 cut(s) 473, 593, 794, 820, 905, 917
BseRI GAGGAG 9 cut(s) 308, 425, 557, 560, 632, 773, 776, 903, 1045
BseXI GCAGC 1 cut(s) 391
Bsh1236I CGCG 1 cut(s) 238
BshFI GGCC 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 1009
BsiSI CCGG 2 cut(s) 395, 936
BsmAI GTCTC 8 cut(s) 164, 227, 290, 481, 482, 569, 655, 800
BsmBI CGTCTC 1 cut(s) 227
BsmI GAATGC 2 cut(s) 46, 709
BsnI GGCC 1 cut(s) 383
Bso31I GGTCTC 1 cut(s) 655
Bsp1286I GDGCHC 1 cut(s) 1009
Bsp143I GATC 2 cut(s) 253, 1064
BspACI CCGC 2 cut(s) 238, 972
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 3 cut(s) 400, 889, 949
BspFNI CGCG 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 903
BspQI GCTCTTC 1 cut(s) 384
BspTNI GGTCTC 1 cut(s) 655
BsrDI GCAATG 1 cut(s) 674
BsrFI RCCGGY 1 cut(s) 394
BsrI ACTGG 6 cut(s) 473, 593, 794, 820, 905, 917
BssAI RCCGGY 1 cut(s) 394
BssMI GATC 2 cut(s) 253, 1064
Bst4CI ACNGT 4 cut(s) 421, 778, 882, 891
Bst6I CTCTTC 7 cut(s) 216, 364, 384, 453, 522, 798, 936
BstAPI GCANNNNNTGC 1 cut(s) 559
BstC8I GCNNGC 3 cut(s) 372, 396, 953
BstDEI CTNAG 4 cut(s) 214, 408, 897, 957
BstF5I GGATG 3 cut(s) 66, 469, 577
BstFNI CGCG 1 cut(s) 238
BstHHI GCGC 2 cut(s) 709, 1062
BstKTI GATC 2 cut(s) 256, 1067
BstMAI GTCTC 8 cut(s) 164, 227, 290, 481, 482, 569, 655, 800
BstMBI GATC 2 cut(s) 253, 1064
BstMWI GCNNNNNNNGC 3 cut(s) 380, 404, 559
BstNSI RCATGY 1 cut(s) 374
BstSFI CTRYAG 3 cut(s) 249, 420, 777
BstUI CGCG 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 391
BstXI CCANNNNNNTGG 1 cut(s) 1026
Bsu36I CCTNAGG 1 cut(s) 897
BsuRI GGCC 1 cut(s) 383
BtrI CACGTC 1 cut(s) 11
BtsCI GGATG 3 cut(s) 66, 469, 577
Cac8I GCNNGC 3 cut(s) 372, 396, 953
CaiI CAGNNNCTG 1 cut(s) 833
CfoI GCGC 2 cut(s) 709, 1062
Cfr10I RCCGGY 1 cut(s) 394
Cfr13I GGNCC 2 cut(s) 382, 584
CseI GACGC 1 cut(s) 244
Csp6I GTAC 2 cut(s) 417, 813
CviAII CATG 5 cut(s) 371, 386, 697, 841, 1026
CviJI RGCY 8 cut(s) 218, 347, 383, 394, 398, 404, 955, 1007
CviKI_1 RGCY 8 cut(s) 218, 347, 383, 394, 398, 404, 955, 1007
CviQI GTAC 2 cut(s) 417, 813
DdeI CTNAG 4 cut(s) 214, 408, 897, 957
DpnI GATC 2 cut(s) 255, 1066
DpnII GATC 2 cut(s) 253, 1064
Eam1104I CTCTTC 7 cut(s) 216, 364, 384, 453, 522, 798, 936
EarI CTCTTC 7 cut(s) 216, 364, 384, 453, 522, 798, 936
Ecl136II GAGCTC 1 cut(s) 1007
Eco24I GRGCYC 1 cut(s) 1009
Eco31I GGTCTC 1 cut(s) 655
Eco32I GATATC 1 cut(s) 963
Eco47I GGWCC 1 cut(s) 584
Eco53kI GAGCTC 1 cut(s) 1007
Eco57I CTGAAG 3 cut(s) 62, 240, 420
Eco81I CCTNAGG 1 cut(s) 897
EcoICRI GAGCTC 1 cut(s) 1007
EcoRV GATATC 1 cut(s) 963
EcoT38I GRGCYC 1 cut(s) 1009
Esp3I CGTCTC 1 cut(s) 227
FaeI CATG 5 cut(s) 374, 389, 700, 844, 1029
FaiI YATR 9 cut(s) 147, 344, 372, 387, 558, 698, 842, 948, 1027
FatI CATG 5 cut(s) 370, 385, 696, 840, 1025
Fnu4HI GCNGC 1 cut(s) 405
FokI GGATG 3 cut(s) 53, 476, 584
FriOI GRGCYC 1 cut(s) 1009
Fsp4HI GCNGC 1 cut(s) 405
FspBI CTAG 3 cut(s) 810, 849, 1002
GlaI GCGC 2 cut(s) 708, 1061
GluI GCNGC 1 cut(s) 405
GsuI CTGGAG 2 cut(s) 576, 900
HaeIII GGCC 1 cut(s) 383
HapII CCGG 2 cut(s) 395, 936
HgaI GACGC 1 cut(s) 244
HhaI GCGC 2 cut(s) 709, 1062
Hin1II CATG 5 cut(s) 374, 389, 700, 844, 1029
Hin6I GCGC 2 cut(s) 707, 1060
HinP1I GCGC 2 cut(s) 707, 1060
HinfI GANTC 8 cut(s) 272, 298, 329, 356, 668, 821, 869, 923
HpaII CCGG 2 cut(s) 395, 936
HphI GGTGA 2 cut(s) 251, 329
Hpy166II GTNNAC 1 cut(s) 1043
Hpy188I TCNGA 5 cut(s) 130, 303, 748, 967, 1069
Hpy188III TCNNGA 2 cut(s) 191, 311
Hpy8I GTNNAC 1 cut(s) 1043
HpyAV CCTTC 4 cut(s) 15, 526, 597, 748
HpyCH4III ACNGT 4 cut(s) 421, 778, 882, 891
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 103, 1015
HpyF10VI GCNNNNNNNGC 3 cut(s) 380, 404, 559
HpyF3I CTNAG 4 cut(s) 214, 408, 897, 957
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 5 cut(s) 374, 389, 700, 844, 1029
HspAI GCGC 2 cut(s) 707, 1060
KroI GCCGGC 1 cut(s) 394
KroNI GCCGGC 1 cut(s) 396
Kzo9I GATC 2 cut(s) 253, 1064
LguI GCTCTTC 1 cut(s) 384
LmnI GCTCC 1 cut(s) 1012
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 3 cut(s) 35, 214, 922
MaeI CTAG 3 cut(s) 810, 849, 1002
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 3 cut(s) 181, 844, 997
MalI GATC 2 cut(s) 255, 1066
MboI GATC 2 cut(s) 253, 1064
MfeI CAATTG 1 cut(s) 927
MhlI GDGCHC 1 cut(s) 1009
MluCI AATT 5 cut(s) 124, 155, 720, 788, 927
MlyI GAGTC 3 cut(s) 292, 350, 830
MmeI TCCRAC 1 cut(s) 797
MroNI GCCGGC 1 cut(s) 394
MseI TTAA 1 cut(s) 158
MspI CCGG 2 cut(s) 395, 936
MunI CAATTG 1 cut(s) 927
Mva1269I GAATGC 2 cut(s) 46, 709
MvnI CGCG 1 cut(s) 238
MwoI GCNNNNNNNGC 3 cut(s) 380, 404, 559
NaeI GCCGGC 1 cut(s) 396
NdeII GATC 2 cut(s) 253, 1064
NgoMIV GCCGGC 1 cut(s) 394
NlaIII CATG 5 cut(s) 374, 389, 700, 844, 1029
NlaIV GGNNCC 1 cut(s) 903
NmuCI GTSAC 2 cut(s) 181, 997
NspI RCATGY 1 cut(s) 374
PaeI GCATGC 1 cut(s) 374
PciSI GCTCTTC 1 cut(s) 384
PcsI WCGNNNNNNNCGW 1 cut(s) 881
PctI GAATGC 2 cut(s) 46, 709
PdiI GCCGGC 1 cut(s) 396
PfeI GAWTC 5 cut(s) 272, 329, 668, 869, 923
PkrI GCNGC 1 cut(s) 406
PleI GAGTC 3 cut(s) 292, 350, 829
PpsI GAGTC 3 cut(s) 292, 350, 829
Psp124BI GAGCTC 1 cut(s) 1009
PspN4I GGNNCC 1 cut(s) 903
PspPI GGNCC 2 cut(s) 382, 584
PstNI CAGNNNCTG 1 cut(s) 833
RsaI GTAC 2 cut(s) 418, 814
RsaNI GTAC 2 cut(s) 417, 813
SacI GAGCTC 1 cut(s) 1009
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 1 cut(s) 158
SatI GCNGC 1 cut(s) 405
Sau3AI GATC 2 cut(s) 253, 1064
Sau96I GGNCC 2 cut(s) 382, 584
ScaI AGTACT 2 cut(s) 418, 814
SchI GAGTC 3 cut(s) 292, 350, 830
SduI GDGCHC 1 cut(s) 1009
SfaNI GCATC 3 cut(s) 35, 214, 922
SfcI CTRYAG 3 cut(s) 249, 420, 777
SinI GGWCC 1 cut(s) 584
SpeI ACTAGT 2 cut(s) 809, 848
SphI GCATGC 1 cut(s) 374
Sse9I AATT 5 cut(s) 124, 155, 720, 788, 927
SsiI CCGC 2 cut(s) 238, 972
SspMI CTAG 3 cut(s) 810, 849, 1002
SstI GAGCTC 1 cut(s) 1009
TaaI ACNGT 4 cut(s) 421, 778, 882, 891
TaiI ACGT 1 cut(s) 13
TaqI TCGA 4 cut(s) 447, 713, 875, 884
TasI AATT 5 cut(s) 124, 155, 720, 788, 927
TatI WGTACW 2 cut(s) 416, 812
TfiI GAWTC 5 cut(s) 272, 329, 668, 869, 923
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TseFI GTSAC 2 cut(s) 181, 997
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 2 cut(s) 181, 997
TspDTI ATGAA 4 cut(s) 264, 402, 861, 1014
TspGWI ACGGA 2 cut(s) 297, 972
VpaK11BI GGWCC 1 cut(s) 584
XceI RCATGY 1 cut(s) 374
XspI CTAG 3 cut(s) 810, 849, 1002
ZrmI AGTACT 2 cut(s) 418, 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.