Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011583

Physical Location & Seq

Genomic Coordinates Reverse (-)

12044147 .. 12046966

Gene Structure 2820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1152100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGCCTCCACGTCCTAAGAAAATCAAACCAAAACTACTTGCCAAGAAGAAAACCAAAAGCAGAATCCGTCAATCTCCACCCACCCTTCAACTCCAACAACCCCCACTCCAAGACAAAGAATTAAGGAGTTGCCATACTGCTTCTGCAACTTGTCAAAATCATTCTGCCGGTGATCAATACTCGAAGAAGGAGGAGAGGCAAAAAATTTCTGCAAATCTTAACGAAATGGCGGATTCTGCAAATGGGAAGCTTGAGGGGGATGAAAATGTTCAACCAGGCGATGTTGGGGACTCAAAACCTGTGGTTGAATCCGTGCGGGATGTCGCTATCTATGATGGTTCCGAGCCGGCAAAGGAAACCCGTGAAGATGATGCTGATGGTTCGGGTTCGGGTTCGAGTTCGAGTTTCAGTAGTAGTAGTTCGGATGAAGAGGCGGAAAGTGCTCAAGTGGCGGATGATTCAGGGAAAGTAGTAGAGGAGAAGACCGAAGAAGTTGATATCTCGGTTGCTAAGACGGTTAAATCTGTGTCCAATCATTTGGATCAAGGTGGTGTTGTTGAGGAAACCAAAGCGGAGGAGGTGGTGGAGGAGGAGAAGGTGGTGGCGTCTTTGGATGAGACTGATGAATCTTCTCCGGCCATCACGGAGGAGGTGTCGAAGCAGGTTGAGGAAAAAATATTGTCATATGTGGAAGAGAGTAATGGGCTTTCTCCAGTCGAAACCGGTTTGGTGTCCGAGGAGGTTGAAGAATCAACATTGCCGTTGGGCAAGAAAGAGGATTGTGCTCCAGTCATAACATATGTGGAGTCGAAAGGAACTGAAGAAGCATATGTGGAGTCGAAACCGGTTCCTGCTGCTGTTGCAGATGTTGTGTCAAAGGGAACCGAGGAAATAAAAAAACCAGTTTCCGAAGAGCAAACTGGGGAGTCATCAGGTACTGCTTACAAGGAAGAGGTTCCAGTAGTCGAATCAGCTGATGCCGGACAAGATTATGGCAAGGCCGTGATCCCCGAAAGCTCAGGAAATCCGGTAACCGATTTGCTTAATTTACTGTCTCCGGTGCCGGACGCCCCCTGCATCCGACTTCATGGAGGAGTTGCTGTGGACTTTTCGAAATTCTGCACCGAAGATCTGACAGATAATTTAAGAAACACAACATTTCATCTGGTGCAACTGAGCCATGAAGATCGCACAGCTATACCTAAATCTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

405

Amino Acids

43.31

Weight (kDa)

4.53

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011583)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38210 FvH4_6g38210 FvH4_6g38210 FvH4_6g38210
malus_domestica	MD09G1152100.v1.1 MD17G1139600.v1.1
prunus_persica	Prupe.3G172400_v2.0.a1 Prupe.3G172400_v2.0.a1
pyrus_communis	pycom17g13270
rosa_chinensis	RchiOBHm_Chr2g0151471
rosa_laevigata	RLG00000020552
rosa_multiflora	Rmu_sc0000940.1_g000017
rosa_roxburghii	Rroxscaffold_2G00096440
rosa_rugosa	Rorug02G0426300 Rorug02G0426400
rosa_samantha	Rh2AG487100 Rh2BG499500 Rh2CG473500 Rh2DG510700
rosa_wichuraiana	Rw2G039920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	652
AccB1I	GGYRCC	1 cut(s)	1060
AciI	CCGC	5 cut(s)	230, 316, 434, 452, 572
AclWI	GGATC	2 cut(s)	549, 1000
AcoI	YGGCCR	1 cut(s)	636
AcsI	RAATTY	2 cut(s)	204, 1115
AcuI	CTGAAG	1 cut(s)	840
AcyI	GRCGYC	2 cut(s)	605, 1068
AfaI	GTAC	1 cut(s)	937
AgeI	ACCGGT	2 cut(s)	722, 844
AgsI	TTSAA	4 cut(s)	89, 272, 308, 746
AjiI	CACGTC	1 cut(s)	11
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	4 cut(s)	250, 974, 1017, 1196
AluI	AGCT	4 cut(s)	250, 974, 1017, 1196
Alw21I	GWGCWC	2 cut(s)	445, 787
Alw26I	GTCTC	2 cut(s)	611, 1059
AlwI	GGATC	2 cut(s)	549, 1000
AlwNI	CAGNNNCTG	1 cut(s)	938
AoxI	GGCC	2 cut(s)	636, 999
ApeKI	GCWGC	1 cut(s)	854
ApoI	RAATTY	2 cut(s)	204, 1115
AsiGI	ACCGGT	2 cut(s)	722, 844
Asp700I	GAANNNNTTC	2 cut(s)	267, 954
AsuHPI	GGTGA	1 cut(s)	182
AsuII	TTCGAA	1 cut(s)	1112
BanI	GGYRCC	1 cut(s)	1060
BbsI	GAAGAC	1 cut(s)	488
Bbv12I	GWGCWC	2 cut(s)	445, 787
BbvI	GCAGC	1 cut(s)	841
BccI	CCATC	3 cut(s)	329, 371, 647
BceAI	ACGGC	2 cut(s)	745, 986
BciT130I	CCWGG	1 cut(s)	276
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	611, 1059
BfuAI	ACCTGC	1 cut(s)	652
BglII	AGATCT	1 cut(s)	1129
BisI	GCNGC	1 cut(s)	855
BlsI	GCNGC	1 cut(s)	856
Bme1390I	CCNGG	1 cut(s)	276
BmgBI	CACGTC	1 cut(s)	11
BmiI	GGNNCC	5 cut(s)	340, 849, 883, 957, 1062
BmrFI	CCNGG	1 cut(s)	276
BmrI	ACTGGG	1 cut(s)	930
BmsI	GCATC	3 cut(s)	361, 967, 1086
BmuI	ACTGGG	1 cut(s)	930
BpiI	GAAGAC	1 cut(s)	488
BpmI	CTGGAG	2 cut(s)	696, 771
Bpu10I	CCTNAGC	1 cut(s)	1018
Bpu14I	TTCGAA	1 cut(s)	1112
BpuEI	CTTGAG	2 cut(s)	272, 429
BsaHI	GRCGYC	2 cut(s)	605, 1068
BsaJI	CCNNGG	2 cut(s)	735, 885
BsaWI	WCCGGW	4 cut(s)	722, 844, 1027, 1057
BsaXI	ACNNNNNCTCC	6 cut(s)	90, 120, 638, 668, 1086, 1116
Bse118I	RCCGGY	4 cut(s)	167, 346, 722, 844
Bse1I	ACTGG	5 cut(s)	713, 788, 902, 925, 959
Bse3DI	GCAATG	1 cut(s)	755
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	735, 885
BseGI	GGATG	6 cut(s)	265, 325, 430, 460, 619, 1077
BseMI	GCAATG	1 cut(s)	755
BseMII	CTCAG	2 cut(s)	1032, 1166
BseNI	ACTGG	5 cut(s)	713, 788, 902, 925, 959
BseRI	GAGGAG	8 cut(s)	206, 491, 590, 602, 605, 662, 752, 1107
BseXI	GCAGC	1 cut(s)	841
BsgI	GTGCAG	1 cut(s)	1105
BshFI	GGCC	2 cut(s)	638, 1001
BshNI	GGYRCC	1 cut(s)	1060
BshTI	ACCGGT	2 cut(s)	722, 844
BsiHKAI	GWGCWC	2 cut(s)	445, 787
BsiSI	CCGG	9 cut(s)	168, 347, 635, 723, 845, 981, 1028, 1058, 1064
BslFI	GGGAC	1 cut(s)	302
BsmAI	GTCTC	2 cut(s)	611, 1059
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	2 cut(s)	638, 1001
Bsp119I	TTCGAA	1 cut(s)	1112
Bsp1286I	GDGCHC	2 cut(s)	445, 787
Bsp143I	GATC	5 cut(s)	172, 541, 1005, 1129, 1186
BspACI	CCGC	5 cut(s)	230, 316, 434, 452, 572
BspANI	GGCC	2 cut(s)	638, 1001
BspCNI	CTCAG	2 cut(s)	1031, 1167
BspLI	GGNNCC	5 cut(s)	340, 849, 883, 957, 1062
BspMI	ACCTGC	1 cut(s)	652
BspPI	GGATC	2 cut(s)	549, 1000
BspQI	GCTCTTC	1 cut(s)	906
BspT104I	TTCGAA	1 cut(s)	1112
BspT107I	GGYRCC	1 cut(s)	1060
BsrDI	GCAATG	1 cut(s)	755
BsrFI	RCCGGY	4 cut(s)	167, 346, 722, 844
BsrI	ACTGG	5 cut(s)	713, 788, 902, 925, 959
BssAI	RCCGGY	4 cut(s)	167, 346, 722, 844
BssECI	CCNNGG	2 cut(s)	735, 885
BssMI	GATC	5 cut(s)	172, 541, 1005, 1129, 1186
BssNI	GRCGYC	2 cut(s)	605, 1068
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	517, 1053
Bst6I	CTCTTC	4 cut(s)	423, 687, 906, 945
BstACI	GRCGYC	2 cut(s)	605, 1068
BstBI	TTCGAA	1 cut(s)	1112
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	4 cut(s)	15, 510, 1018, 1175
BstEII	GGTNACC	1 cut(s)	1030
BstF5I	GGATG	6 cut(s)	265, 325, 430, 460, 619, 1077
BstKTI	GATC	5 cut(s)	175, 544, 1008, 1132, 1189
BstMAI	GTCTC	2 cut(s)	611, 1059
BstMBI	GATC	5 cut(s)	172, 541, 1005, 1129, 1186
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 440, 449, 860
BstNI	CCWGG	1 cut(s)	276
BstPI	GGTNACC	1 cut(s)	1030
BstSCI	CCNGG	1 cut(s)	274
BstV1I	GCAGC	1 cut(s)	841
BstV2I	GAAGAC	1 cut(s)	488
BstX2I	RGATCY	1 cut(s)	1129
BstXI	CCANNNNNNTGG	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	1129
BsuRI	GGCC	2 cut(s)	638, 1001
BtgZI	GCGATG	1 cut(s)	294
BtrI	CACGTC	1 cut(s)	11
BtsCI	GGATG	6 cut(s)	265, 325, 430, 460, 619, 1077
BveI	ACCTGC	1 cut(s)	652
Cac8I	GCNNGC	1 cut(s)	348
CaiI	CAGNNNCTG	1 cut(s)	938
Cfr10I	RCCGGY	4 cut(s)	167, 346, 722, 844
CseI	GACGC	2 cut(s)	594, 1076
Csp6I	GTAC	1 cut(s)	936
CspAI	ACCGGT	2 cut(s)	722, 844
CspCI	CAANNNNNGTGG	2 cut(s)	282, 317
CviAII	CATG	2 cut(s)	1088, 1181
CviJI	RGCY	9 cut(s)	250, 346, 638, 706, 974, 1001, 1017, 1179, 1196
CviKI_1	RGCY	9 cut(s)	250, 346, 638, 706, 974, 1001, 1017, 1179, 1196
CviQI	GTAC	1 cut(s)	936
DdeI	CTNAG	4 cut(s)	15, 510, 1018, 1175
DpnI	GATC	5 cut(s)	174, 543, 1007, 1131, 1188
DpnII	GATC	5 cut(s)	172, 541, 1005, 1129, 1186
EaeI	YGGCCR	1 cut(s)	636
Eam1104I	CTCTTC	4 cut(s)	423, 687, 906, 945
EarI	CTCTTC	4 cut(s)	423, 687, 906, 945
EciI	GGCGGA	3 cut(s)	245, 449, 467
Eco32I	GATATC	1 cut(s)	499
Eco57I	CTGAAG	1 cut(s)	840
Eco91I	GGTNACC	1 cut(s)	1030
EcoO65I	GGTNACC	1 cut(s)	1030
EcoRII	CCWGG	1 cut(s)	274
EcoRV	GATATC	1 cut(s)	499
FaeI	CATG	2 cut(s)	1091, 1184
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	2 cut(s)	1087, 1180
FauI	CCCGC	1 cut(s)	309
FauNDI	CATATG	3 cut(s)	685, 799, 829
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	1 cut(s)	855
FokI	GGATG	6 cut(s)	272, 332, 437, 467, 626, 1064
Fsp4HI	GCNGC	1 cut(s)	855
GluI	GCNGC	1 cut(s)	855
GsuI	CTGGAG	2 cut(s)	696, 771
HaeIII	GGCC	2 cut(s)	638, 1001
HapII	CCGG	9 cut(s)	168, 347, 635, 723, 845, 981, 1028, 1058, 1064
HgaI	GACGC	2 cut(s)	594, 1076
Hin1I	GRCGYC	2 cut(s)	605, 1068
Hin1II	CATG	2 cut(s)	1091, 1184
HindIII	AAGCTT	1 cut(s)	248
HpaII	CCGG	9 cut(s)	168, 347, 635, 723, 845, 981, 1028, 1058, 1064
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	1105
Hpy188I	TCNGA	6 cut(s)	343, 424, 736, 910, 1082, 1134
Hpy188III	TCNNGA	1 cut(s)	1020
Hpy8I	GTNNAC	1 cut(s)	1105
HpyAV	CCTTC	3 cut(s)	95, 181, 589
HpyCH4III	ACNGT	2 cut(s)	517, 1053
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	7 cut(s)	146, 212, 239, 863, 1077, 1122, 1171
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 440, 449, 860
HpyF3I	CTNAG	4 cut(s)	15, 510, 1018, 1175
HpySE526I	ACGT	1 cut(s)	10
Hsp92I	GRCGYC	2 cut(s)	605, 1068
Hsp92II	CATG	2 cut(s)	1091, 1184
KroI	GCCGGC	1 cut(s)	346
KroNI	GCCGGC	1 cut(s)	348
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	5 cut(s)	172, 541, 1005, 1129, 1186
LguI	GCTCTTC	1 cut(s)	906
LmnI	GCTCC	1 cut(s)	790
Lsp1109I	GCAGC	1 cut(s)	841
LweI	GCATC	3 cut(s)	361, 967, 1086
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	1 cut(s)	1030
MalI	GATC	5 cut(s)	174, 543, 1007, 1131, 1188
MboI	GATC	5 cut(s)	172, 541, 1005, 1129, 1186
MflI	RGATCY	1 cut(s)	1129
MhlI	GDGCHC	2 cut(s)	445, 787
MluCI	AATT	5 cut(s)	119, 204, 1045, 1115, 1141
MlyI	GAGTC	4 cut(s)	284, 815, 845, 935
MmeI	TCCRAC	2 cut(s)	118, 1105
MroNI	GCCGGC	1 cut(s)	346
MroXI	GAANNNNTTC	2 cut(s)	267, 954
MseI	TTAA	5 cut(s)	122, 219, 519, 1044, 1145
MspA1I	CMGCKG	1 cut(s)	974
MspI	CCGG	9 cut(s)	168, 347, 635, 723, 845, 981, 1028, 1058, 1064
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	4 cut(s)	236, 440, 449, 860
NaeI	GCCGGC	1 cut(s)	348
NdeI	CATATG	3 cut(s)	685, 799, 829
NdeII	GATC	5 cut(s)	172, 541, 1005, 1129, 1186
NgoMIV	GCCGGC	1 cut(s)	346
NlaIII	CATG	2 cut(s)	1091, 1184
NlaIV	GGNNCC	5 cut(s)	340, 849, 883, 957, 1062
NspV	TTCGAA	1 cut(s)	1112
PciSI	GCTCTTC	1 cut(s)	906
PdiI	GCCGGC	1 cut(s)	348
PdmI	GAANNNNTTC	2 cut(s)	267, 954
PfeI	GAWTC	7 cut(s)	63, 233, 308, 458, 626, 749, 968
PinAI	ACCGGT	2 cut(s)	722, 844
PkrI	GCNGC	1 cut(s)	856
PleI	GAGTC	4 cut(s)	284, 814, 844, 934
PpsI	GAGTC	4 cut(s)	284, 814, 844, 934
Psp6I	CCWGG	1 cut(s)	274
PspEI	GGTNACC	1 cut(s)	1030
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	5 cut(s)	340, 849, 883, 957, 1062
PsrI	GAACNNNNNNTAC	2 cut(s)	403, 435
PstNI	CAGNNNCTG	1 cut(s)	938
PsuI	RGATCY	1 cut(s)	1129
PvuII	CAGCTG	1 cut(s)	974
RsaI	GTAC	1 cut(s)	937
RsaNI	GTAC	1 cut(s)	936
SapI	GCTCTTC	1 cut(s)	906
SaqAI	TTAA	5 cut(s)	122, 219, 519, 1044, 1145
SatI	GCNGC	1 cut(s)	855
Sau3AI	GATC	5 cut(s)	172, 541, 1005, 1129, 1186
SchI	GAGTC	4 cut(s)	284, 815, 845, 935
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	2 cut(s)	445, 787
SfaNI	GCATC	3 cut(s)	361, 967, 1086
SfuI	TTCGAA	1 cut(s)	1112
SmlI	CTYRAG	2 cut(s)	251, 444
SmoI	CTYRAG	2 cut(s)	251, 444
Sse9I	AATT	5 cut(s)	119, 204, 1045, 1115, 1141
SsiI	CCGC	5 cut(s)	230, 316, 434, 452, 572
SspI	AATATT	1 cut(s)	678
StyD4I	CCNGG	1 cut(s)	274
TaaI	ACNGT	2 cut(s)	517, 1053
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	9 cut(s)	182, 395, 401, 656, 717, 809, 839, 966, 1112
TaqII	GACCGA	1 cut(s)	500
TasI	AATT	5 cut(s)	119, 204, 1045, 1115, 1141
TfiI	GAWTC	7 cut(s)	63, 233, 308, 458, 626, 749, 968
Tru1I	TTAA	5 cut(s)	122, 219, 519, 1044, 1145
Tru9I	TTAA	5 cut(s)	122, 219, 519, 1044, 1145
TseI	GCWGC	1 cut(s)	854
TspDTI	ATGAA	6 cut(s)	276, 441, 639, 1076, 1151, 1197
TspGWI	ACGGA	3 cut(s)	56, 301, 659
XapI	RAATTY	2 cut(s)	204, 1115
XmnI	GAANNNNTTC	2 cut(s)	267, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.