Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000940.1

Orthogroup ID

OG0011583

Physical Location & Seq

Genomic Coordinates Forward (+)

69759 .. 71913

Gene Structure 2155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000940.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atgccttcacgtccaaagaaaaaagcatcaaagaagaaactgaagcattccacagcacaacccatcatccaccactctctacctaccattcaaatccaagtgcaagaaagttttgtggaaactaattcagaagtgaagttttgttatgagaaagaattaagtggttgtgagactgcttctgtgacttgtcaagaccattcttcgcatcaatacttagctgaagaggaacaagagacgcgcaaactttctgtagatcatcaccaaatggcagattcatcaaacggaaagttagaggagactcggaaagttcaagagggtgaagtagttgaatctgtaagggatatagctattgatgactcttcggtagagcatgcaaaaaaggcccatgaagagccggctgaagctgctgaggagagtactgtagtggtgggattgggagaagtagtcgaaaataaagaagaggatgttgttccagtctcggttgtggagacagaaacttctgttgttgatgatgttgttgaaccagaagagaaggagaaggaggaggagaagcaatatgtgccatctgtggatgagacagatggaccttctccagttgtggaagatgttgtgccagaggagattgaggaaaagacatcaacagatttggtctctaatggggttgaggaatcaacattgccatctttgagtgaggacatgacgaatgcgctgtcgaaaggaattgaagaaaccgaagtgccttgttcagatgagaaggaggaggaggttgttccaactgtagaagtaaaattgccagttgttgaagagactagtactggggagtcatcaggtgctgattacatggtaactagtgaaagtgttgatgacgattcatcgaaacagttgaaacagtcgcctgaggttccagtttctcctccagttgaatcaattgatgccggagaagagtatggcaagcctgagatatctgaaaccgcagaaaatccgtctattgtatctttctgcgccgatcagatagatgattcaagcgatgagtggaatggttcagttcatgatggagctagcacaacaagtctatatagggagttggggtttcagagtttcgcatatttggttttgcgtgtggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

375

Amino Acids

41.13

Weight (kDa)

4.27

Isoelectric Point (pI)

59.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011583)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38210 FvH4_6g38210 FvH4_6g38210 FvH4_6g38210
malus_domestica	MD09G1152100.v1.1 MD17G1139600.v1.1
prunus_persica	Prupe.3G172400_v2.0.a1 Prupe.3G172400_v2.0.a1
pyrus_communis	pycom17g13270
rosa_chinensis	RchiOBHm_Chr2g0151471
rosa_laevigata	RLG00000020552
rosa_multiflora	Rmu_sc0000940.1_g000017
rosa_roxburghii	Rroxscaffold_2G00096440
rosa_rugosa	Rorug02G0426300 Rorug02G0426400
rosa_samantha	Rh2AG487100 Rh2BG499500 Rh2CG473500 Rh2DG510700
rosa_wichuraiana	Rw2G039920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	238
AciI	CCGC	1 cut(s)	972
AcuI	CTGAAG	3 cut(s)	62, 240, 420
AfaI	GTAC	2 cut(s)	418, 814
AgsI	TTSAA	9 cut(s)	92, 311, 329, 521, 725, 803, 886, 923, 1023
AhlI	ACTAGT	2 cut(s)	809, 848
AjiI	CACGTC	1 cut(s)	11
AluBI	AGCT	4 cut(s)	218, 347, 404, 1058
AluI	AGCT	4 cut(s)	218, 347, 404, 1058
Alw26I	GTCTC	8 cut(s)	164, 227, 290, 481, 482, 569, 655, 800
AlwNI	CAGNNNCTG	1 cut(s)	833
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	404
ArsI	GACNNNNNNTTYG	2 cut(s)	695, 727
AspLEI	GCGC	3 cut(s)	240, 709, 1004
AspS9I	GGNCC	2 cut(s)	382, 584
AsuHPI	GGTGA	2 cut(s)	251, 329
AsuNHI	GCTAGC	1 cut(s)	1058
AvaII	GGWCC	1 cut(s)	584
AxyI	CCTNAGG	1 cut(s)	897
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	5 cut(s)	71, 571, 575, 688, 1046
BcoDI	GTCTC	8 cut(s)	164, 227, 290, 481, 482, 569, 655, 800
BcuI	ACTAGT	2 cut(s)	809, 848
BfaI	CTAG	3 cut(s)	810, 849, 1059
BfmI	CTRYAG	3 cut(s)	249, 420, 777
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
BmcAI	AGTACT	2 cut(s)	418, 814
Bme18I	GGWCC	1 cut(s)	584
BmgBI	CACGTC	1 cut(s)	11
BmgT120I	GGNCC	2 cut(s)	382, 584
BmiI	GGNNCC	1 cut(s)	903
BmrI	ACTGGG	1 cut(s)	825
BmsI	GCATC	3 cut(s)	35, 214, 922
BmtI	GCTAGC	1 cut(s)	1062
BmuI	ACTGGG	1 cut(s)	825
BpmI	CTGGAG	2 cut(s)	576, 900
Bpu10I	CCTNAGC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	655
BsaXI	ACNNNNNCTCC	4 cut(s)	429, 459, 1073, 1103
Bse118I	RCCGGY	1 cut(s)	394
Bse1I	ACTGG	6 cut(s)	473, 593, 794, 820, 905, 917
Bse21I	CCTNAGG	1 cut(s)	897
Bse3DI	GCAATG	1 cut(s)	674
BseGI	GGATG	3 cut(s)	66, 469, 577
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	3 cut(s)	399, 888, 948
BseNI	ACTGG	6 cut(s)	473, 593, 794, 820, 905, 917
BseRI	GAGGAG	8 cut(s)	308, 425, 557, 560, 632, 773, 776, 903
BseXI	GCAGC	1 cut(s)	391
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	1 cut(s)	383
BsiSI	CCGG	2 cut(s)	395, 936
BsmAI	GTCTC	8 cut(s)	164, 227, 290, 481, 482, 569, 655, 800
BsmBI	CGTCTC	1 cut(s)	227
BsmI	GAATGC	2 cut(s)	46, 709
BsnI	GGCC	1 cut(s)	383
Bso31I	GGTCTC	1 cut(s)	655
Bsp143I	GATC	2 cut(s)	253, 1006
BspACI	CCGC	1 cut(s)	972
BspANI	GGCC	1 cut(s)	383
BspCNI	CTCAG	3 cut(s)	400, 889, 949
BspFNI	CGCG	1 cut(s)	238
BspHI	TCATGA	1 cut(s)	1048
BspLI	GGNNCC	1 cut(s)	903
BspOI	GCTAGC	1 cut(s)	1062
BspQI	GCTCTTC	1 cut(s)	384
BspTNI	GGTCTC	1 cut(s)	655
BsrDI	GCAATG	1 cut(s)	674
BsrFI	RCCGGY	1 cut(s)	394
BsrI	ACTGG	6 cut(s)	473, 593, 794, 820, 905, 917
BssAI	RCCGGY	1 cut(s)	394
BssMI	GATC	2 cut(s)	253, 1006
Bst4CI	ACNGT	4 cut(s)	421, 778, 882, 891
Bst6I	CTCTTC	7 cut(s)	216, 364, 384, 453, 522, 798, 936
BstAPI	GCANNNNNTGC	1 cut(s)	559
BstC8I	GCNNGC	4 cut(s)	372, 396, 953, 1060
BstDEI	CTNAG	4 cut(s)	214, 408, 897, 957
BstF5I	GGATG	3 cut(s)	66, 469, 577
BstFNI	CGCG	1 cut(s)	238
BstHHI	GCGC	3 cut(s)	240, 709, 1004
BstKTI	GATC	2 cut(s)	256, 1009
BstMAI	GTCTC	8 cut(s)	164, 227, 290, 481, 482, 569, 655, 800
BstMBI	GATC	2 cut(s)	253, 1006
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 404, 559
BstNSI	RCATGY	1 cut(s)	374
BstSFI	CTRYAG	3 cut(s)	249, 420, 777
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	391
Bsu36I	CCTNAGG	1 cut(s)	897
BsuRI	GGCC	1 cut(s)	383
BtgZI	GCGATG	1 cut(s)	1041
BtrI	CACGTC	1 cut(s)	11
BtsCI	GGATG	3 cut(s)	66, 469, 577
Cac8I	GCNNGC	4 cut(s)	372, 396, 953, 1060
CaiI	CAGNNNCTG	1 cut(s)	833
CciI	TCATGA	1 cut(s)	1048
CfoI	GCGC	3 cut(s)	240, 709, 1004
Cfr10I	RCCGGY	1 cut(s)	394
Cfr13I	GGNCC	2 cut(s)	382, 584
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	417, 813
CviAII	CATG	5 cut(s)	371, 386, 697, 841, 1049
CviJI	RGCY	8 cut(s)	218, 347, 383, 394, 398, 404, 955, 1058
CviKI_1	RGCY	8 cut(s)	218, 347, 383, 394, 398, 404, 955, 1058
CviQI	GTAC	2 cut(s)	417, 813
DdeI	CTNAG	4 cut(s)	214, 408, 897, 957
DpnI	GATC	2 cut(s)	255, 1008
DpnII	GATC	2 cut(s)	253, 1006
Eam1104I	CTCTTC	7 cut(s)	216, 364, 384, 453, 522, 798, 936
EarI	CTCTTC	7 cut(s)	216, 364, 384, 453, 522, 798, 936
Eco31I	GGTCTC	1 cut(s)	655
Eco32I	GATATC	1 cut(s)	963
Eco47I	GGWCC	1 cut(s)	584
Eco57I	CTGAAG	3 cut(s)	62, 240, 420
Eco81I	CCTNAGG	1 cut(s)	897
EcoRV	GATATC	1 cut(s)	963
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	5 cut(s)	374, 389, 700, 844, 1052
FatI	CATG	5 cut(s)	370, 385, 696, 840, 1048
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	3 cut(s)	53, 476, 584
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	3 cut(s)	810, 849, 1059
GlaI	GCGC	3 cut(s)	239, 708, 1003
GluI	GCNGC	1 cut(s)	405
GsuI	CTGGAG	2 cut(s)	576, 900
HaeIII	GGCC	1 cut(s)	383
HapII	CCGG	2 cut(s)	395, 936
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	3 cut(s)	240, 709, 1004
Hin1II	CATG	5 cut(s)	374, 389, 700, 844, 1052
Hin6I	GCGC	3 cut(s)	238, 707, 1002
HinP1I	GCGC	3 cut(s)	238, 707, 1002
HinfI	GANTC	9 cut(s)	272, 298, 329, 356, 668, 821, 869, 923, 1019
HpaII	CCGG	2 cut(s)	395, 936
HphI	GGTGA	2 cut(s)	251, 329
Hpy188I	TCNGA	6 cut(s)	130, 303, 748, 967, 1011, 1095
Hpy188III	TCNNGA	3 cut(s)	191, 311, 1049
HpyAV	CCTTC	5 cut(s)	15, 526, 532, 597, 748
HpyCH4III	ACNGT	4 cut(s)	421, 778, 882, 891
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	2 cut(s)	103, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 404, 559
HpyF3I	CTNAG	4 cut(s)	214, 408, 897, 957
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	5 cut(s)	374, 389, 700, 844, 1052
HspAI	GCGC	3 cut(s)	238, 707, 1002
KroI	GCCGGC	1 cut(s)	394
KroNI	GCCGGC	1 cut(s)	396
Kzo9I	GATC	2 cut(s)	253, 1006
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	1 cut(s)	1055
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	3 cut(s)	35, 214, 922
MaeI	CTAG	3 cut(s)	810, 849, 1059
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	2 cut(s)	181, 844
MalI	GATC	2 cut(s)	255, 1008
MboI	GATC	2 cut(s)	253, 1006
MfeI	CAATTG	1 cut(s)	927
MluCI	AATT	5 cut(s)	124, 155, 720, 788, 927
MlyI	GAGTC	3 cut(s)	292, 350, 830
MmeI	TCCRAC	1 cut(s)	797
MroNI	GCCGGC	1 cut(s)	394
MseI	TTAA	1 cut(s)	158
MspI	CCGG	2 cut(s)	395, 936
MunI	CAATTG	1 cut(s)	927
Mva1269I	GAATGC	2 cut(s)	46, 709
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	3 cut(s)	380, 404, 559
NaeI	GCCGGC	1 cut(s)	396
NdeII	GATC	2 cut(s)	253, 1006
NgoMIV	GCCGGC	1 cut(s)	394
NheI	GCTAGC	1 cut(s)	1058
NlaIII	CATG	5 cut(s)	374, 389, 700, 844, 1052
NlaIV	GGNNCC	1 cut(s)	903
NmuCI	GTSAC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	374
PaeI	GCATGC	1 cut(s)	374
PagI	TCATGA	1 cut(s)	1048
PciSI	GCTCTTC	1 cut(s)	384
PctI	GAATGC	2 cut(s)	46, 709
PdiI	GCCGGC	1 cut(s)	396
PfeI	GAWTC	6 cut(s)	272, 329, 668, 869, 923, 1019
PkrI	GCNGC	1 cut(s)	406
PleI	GAGTC	3 cut(s)	292, 350, 829
PpsI	GAGTC	3 cut(s)	292, 350, 829
PspN4I	GGNNCC	1 cut(s)	903
PspPI	GGNCC	2 cut(s)	382, 584
PstNI	CAGNNNCTG	1 cut(s)	833
RsaI	GTAC	2 cut(s)	418, 814
RsaNI	GTAC	2 cut(s)	417, 813
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	2 cut(s)	253, 1006
Sau96I	GGNCC	2 cut(s)	382, 584
ScaI	AGTACT	2 cut(s)	418, 814
SchI	GAGTC	3 cut(s)	292, 350, 830
SfaNI	GCATC	3 cut(s)	35, 214, 922
SfcI	CTRYAG	3 cut(s)	249, 420, 777
SinI	GGWCC	1 cut(s)	584
SpeI	ACTAGT	2 cut(s)	809, 848
SphI	GCATGC	1 cut(s)	374
Sse9I	AATT	5 cut(s)	124, 155, 720, 788, 927
SsiI	CCGC	1 cut(s)	972
SspMI	CTAG	3 cut(s)	810, 849, 1059
TaaI	ACNGT	4 cut(s)	421, 778, 882, 891
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	3 cut(s)	447, 713, 875
TasI	AATT	5 cut(s)	124, 155, 720, 788, 927
TatI	WGTACW	2 cut(s)	416, 812
TfiI	GAWTC	6 cut(s)	272, 329, 668, 869, 923, 1019
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	4 cut(s)	264, 402, 861, 1037
TspGWI	ACGGA	2 cut(s)	297, 972
VpaK11BI	GGWCC	1 cut(s)	584
XceI	RCATGY	1 cut(s)	374
XspI	CTAG	3 cut(s)	810, 849, 1059
ZrmI	AGTACT	2 cut(s)	418, 814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.