Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0011583

Physical Location & Seq

Genomic Coordinates Reverse (-)

12553827 .. 12556351

Gene Structure 2525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1139600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGCCTCCACGTTCAAAGAAAATCACATCAAAACTACTTGCCAAGAAAAAAACCATCCGCCAATCTCCCCCTACCCTTCAACCCCAACAAGTCCCAAAGGAGGAGGAGCAGAAAGTTTCTGCAGATCTTAACGAAATGGCGGATTCTTCGAATGGGAAGTTGGAGGGCGCAGAAAATGTTCAACCGGAGGATGTTGGCGACTCAAAACCTGTGGTTGAATCTGTGAGGGACATAGCCATCGATGACTGTTCCGAGCCGGTAAAGGAAACCCGCGATGTTGCTGATGATTCGAGTTCGAGTTCAAGTAGTAGTTCGGATGAAGAGGCGGAAGGTGCTCGAGTGGCGAATGATTCAGGGGAAGTGGAGGGGACCGAAGAAGTTGTTGTCTCGGTTGTTGAGACGGTTGAATCTATGTACAATCATTTGGATCAAGGTTGTGTTGTAGTGGAAACCAAGGTGGAGGAGGAGAAAGTCGCGGCGTCTTTGGATGAGACTGGTGAATCTTCGCCGGCCATCACGGAGGAGGTGTCGAAACAGATTGAGGAAAAAACATTGTCAGATGCGGAAGAGAGTAATGGGGTTGCTCTAGTCGAAACCGATCTGGTGTCCAAGGAGGTTGAAGAATCATGTGCTCCAGTCATAACAGACGTGGTGTCGAAAGGAAGTGAAGAAGCAGTAGTGCCTTGTTCCGATGAGAAGGAAGCGGTTCCTGCTGCTCTTGCAGATATTGTGTCAAAGGGGATCGAGGAAACAAAGTTACCGGTTTCCGAAGAGCAAATTGGGGATTCATCGGGTACTGCTTACAAGGAAGGGGTTCCTGCAGTCGAATCAGCTGATGCCGGGCAAGATCATGGCAAGGCTGAGATCCCCGAAAGCACAGGAAATCCGTCGATTGTAACTGTCGCCGGACACCCCCTGCAGCCGACCTCATGGAAGAATTGCTGTGGACTCTTCGAAATTCTGCACCGAAGATCTGATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

34.7

Weight (kDa)

4.31

Isoelectric Point (pI)

64.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011583)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g38210 FvH4_6g38210 FvH4_6g38210 FvH4_6g38210
malus_domestica	MD09G1152100.v1.1 MD17G1139600.v1.1
prunus_persica	Prupe.3G172400_v2.0.a1 Prupe.3G172400_v2.0.a1
pyrus_communis	pycom17g13270
rosa_chinensis	RchiOBHm_Chr2g0151471
rosa_laevigata	RLG00000020552
rosa_multiflora	Rmu_sc0000940.1_g000017
rosa_roxburghii	Rroxscaffold_2G00096440
rosa_rugosa	Rorug02G0426300 Rorug02G0426400
rosa_samantha	Rh2AG487100 Rh2BG499500 Rh2CG473500 Rh2DG510700
rosa_wichuraiana	Rw2G039920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	273, 476
AciI	CCGC	7 cut(s)	58, 140, 271, 326, 476, 563, 704
AclWI	GGATC	3 cut(s)	435, 749, 859
AcoI	YGGCCR	1 cut(s)	510
AcsI	RAATTY	1 cut(s)	957
AcyI	GRCGYC	1 cut(s)	479
AfaI	GTAC	2 cut(s)	416, 796
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgeI	ACCGGT	1 cut(s)	760
AgsI	TTSAA	7 cut(s)	15, 80, 182, 218, 303, 407, 620
AhdI	GACNNNNNGTC	1 cut(s)	652
AjiI	CACGTC	1 cut(s)	649
AjuI	GAANNNNNNNTTGG	4 cut(s)	143, 175, 762, 794
AluBI	AGCT	1 cut(s)	833
AluI	AGCT	1 cut(s)	833
Alw21I	GWGCWC	2 cut(s)	337, 634
Alw26I	GTCTC	3 cut(s)	391, 392, 485
AlwI	GGATC	3 cut(s)	435, 749, 859
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	1 cut(s)	510
ApeKI	GCWGC	2 cut(s)	713, 919
ApoI	RAATTY	1 cut(s)	957
AsiGI	ACCGGT	1 cut(s)	760
Asp700I	GAANNNNTTC	3 cut(s)	177, 705, 813
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	369
AsuC2I	CCSGG	1 cut(s)	841
AsuHPI	GGTGA	1 cut(s)	509
AsuII	TTCGAA	2 cut(s)	149, 954
AvaI	CYCGRG	1 cut(s)	336
AvaII	GGWCC	1 cut(s)	369
Bbv12I	GWGCWC	2 cut(s)	337, 634
BbvI	GCAGC	2 cut(s)	700, 931
BccI	CCATC	3 cut(s)	62, 245, 521
BcnI	CCSGG	1 cut(s)	841
BcoDI	GTCTC	3 cut(s)	391, 392, 485
BfaI	CTAG	1 cut(s)	587
BfmI	CTRYAG	3 cut(s)	120, 819, 917
BglII	AGATCT	2 cut(s)	124, 971
BisI	GCNGC	3 cut(s)	477, 714, 920
BlsI	GCNGC	3 cut(s)	478, 715, 921
Bme1390I	CCNGG	1 cut(s)	841
Bme18I	GGWCC	1 cut(s)	369
BmeRI	GACNNNNNGTC	1 cut(s)	652
BmeT110I	CYCGRG	1 cut(s)	336
BmgBI	CACGTC	1 cut(s)	649
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	3 cut(s)	370, 708, 816
BmrFI	CCNGG	1 cut(s)	841
BmsI	GCATC	2 cut(s)	550, 826
BpmI	CTGGAG	1 cut(s)	618
Bpu14I	TTCGAA	2 cut(s)	149, 954
BpuMI	CCSGG	1 cut(s)	841
Bsa29I	ATCGAT	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	479
BsaJI	CCNNGG	2 cut(s)	453, 609
BsaWI	WCCGGW	2 cut(s)	184, 760
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse118I	RCCGGY	3 cut(s)	256, 508, 760
Bse1I	ACTGG	2 cut(s)	499, 635
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	453, 609
BseGI	GGATG	4 cut(s)	54, 196, 322, 493
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	852
BseNI	ACTGG	2 cut(s)	499, 635
BseRI	GAGGAG	5 cut(s)	116, 119, 476, 479, 536
BseXI	GCAGC	2 cut(s)	700, 931
BsgI	GTGCAG	1 cut(s)	947
Bsh1236I	CGCG	2 cut(s)	273, 476
BshFI	GGCC	1 cut(s)	512
BshTI	ACCGGT	1 cut(s)	760
BshVI	ATCGAT	1 cut(s)	240
BsiHKAI	GWGCWC	2 cut(s)	337, 634
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	6 cut(s)	185, 257, 509, 761, 840, 906
BslFI	GGGAC	3 cut(s)	77, 242, 382
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	3 cut(s)	391, 392, 485
BsmBI	CGTCTC	1 cut(s)	392
BsmFI	GGGAC	3 cut(s)	77, 242, 382
BsnI	GGCC	1 cut(s)	512
BsoBI	CYCGRG	1 cut(s)	336
Bsp119I	TTCGAA	2 cut(s)	149, 954
Bsp1286I	GDGCHC	2 cut(s)	337, 634
Bsp1407I	TGTACA	1 cut(s)	414
Bsp143I	GATC	7 cut(s)	124, 427, 598, 741, 847, 864, 971
BspACI	CCGC	7 cut(s)	58, 140, 271, 326, 476, 563, 704
BspANI	GGCC	1 cut(s)	512
BspCNI	CTCAG	1 cut(s)	853
BspDI	ATCGAT	1 cut(s)	240
BspFNI	CGCG	2 cut(s)	273, 476
BspLI	GGNNCC	3 cut(s)	370, 708, 816
BspMAI	CTGCAG	3 cut(s)	124, 823, 921
BspPI	GGATC	3 cut(s)	435, 749, 859
BspQI	GCTCTTC	1 cut(s)	765
BspT104I	TTCGAA	2 cut(s)	149, 954
BsrFI	RCCGGY	3 cut(s)	256, 508, 760
BsrGI	TGTACA	1 cut(s)	414
BsrI	ACTGG	2 cut(s)	499, 635
BssAI	RCCGGY	3 cut(s)	256, 508, 760
BssECI	CCNNGG	2 cut(s)	453, 609
BssMI	GATC	7 cut(s)	124, 427, 598, 741, 847, 864, 971
BssNI	GRCGYC	1 cut(s)	479
BssT1I	CCWWGG	2 cut(s)	453, 609
Bst4CI	ACNGT	3 cut(s)	248, 403, 901
Bst6I	CTCTTC	4 cut(s)	315, 561, 765, 956
BstACI	GRCGYC	1 cut(s)	479
BstAUI	TGTACA	1 cut(s)	414
BstBI	TTCGAA	2 cut(s)	149, 954
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	1 cut(s)	861
BstF5I	GGATG	4 cut(s)	54, 196, 322, 493
BstFNI	CGCG	2 cut(s)	273, 476
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	7 cut(s)	127, 430, 601, 744, 850, 867, 974
BstMAI	GTCTC	3 cut(s)	391, 392, 485
BstMBI	GATC	7 cut(s)	124, 427, 598, 741, 847, 864, 971
BstMWI	GCNNNNNNNGC	4 cut(s)	332, 341, 710, 719
BstSCI	CCNGG	1 cut(s)	839
BstSFI	CTRYAG	3 cut(s)	120, 819, 917
BstUI	CGCG	2 cut(s)	273, 476
BstV1I	GCAGC	2 cut(s)	700, 931
BstX2I	RGATCY	3 cut(s)	124, 864, 971
BstYI	RGATCY	3 cut(s)	124, 864, 971
Bsu15I	ATCGAT	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	512
BsuTUI	ATCGAT	1 cut(s)	240
BtgZI	GCGATG	1 cut(s)	288
BtrI	CACGTC	1 cut(s)	649
BtsCI	GGATG	4 cut(s)	54, 196, 322, 493
Cac8I	GCNNGC	1 cut(s)	510
CfoI	GCGC	1 cut(s)	170
Cfr10I	RCCGGY	3 cut(s)	256, 508, 760
Cfr13I	GGNCC	1 cut(s)	369
ClaI	ATCGAT	1 cut(s)	240
CseI	GACGC	1 cut(s)	468
Csp6I	GTAC	2 cut(s)	415, 795
CspAI	ACCGGT	1 cut(s)	760
CspCI	CAANNNNNGTGG	2 cut(s)	192, 227
CviAII	CATG	3 cut(s)	627, 851, 930
CviJI	RGCY	6 cut(s)	236, 256, 512, 833, 860, 922
CviKI_1	RGCY	6 cut(s)	236, 256, 512, 833, 860, 922
CviQI	GTAC	2 cut(s)	415, 795
DdeI	CTNAG	1 cut(s)	861
DpnI	GATC	7 cut(s)	126, 429, 600, 743, 849, 866, 973
DpnII	GATC	7 cut(s)	124, 427, 598, 741, 847, 864, 971
DriI	GACNNNNNGTC	1 cut(s)	652
EaeI	YGGCCR	1 cut(s)	510
Eam1104I	CTCTTC	4 cut(s)	315, 561, 765, 956
Eam1105I	GACNNNNNGTC	1 cut(s)	652
EarI	CTCTTC	4 cut(s)	315, 561, 765, 956
EciI	GGCGGA	3 cut(s)	47, 155, 341
Eco130I	CCWWGG	2 cut(s)	453, 609
Eco47I	GGWCC	1 cut(s)	369
Eco88I	CYCGRG	1 cut(s)	336
EcoT14I	CCWWGG	2 cut(s)	453, 609
ErhI	CCWWGG	2 cut(s)	453, 609
Esp3I	CGTCTC	1 cut(s)	392
FaeI	CATG	3 cut(s)	630, 854, 933
FaiI	YATR	6 cut(s)	233, 413, 628, 641, 852, 931
FaqI	GGGAC	3 cut(s)	77, 242, 382
FatI	CATG	3 cut(s)	626, 850, 929
FauI	CCCGC	1 cut(s)	278
Fnu4HI	GCNGC	3 cut(s)	477, 714, 920
FokI	GGATG	4 cut(s)	41, 203, 329, 500
Fsp4HI	GCNGC	3 cut(s)	477, 714, 920
FspBI	CTAG	1 cut(s)	587
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	3 cut(s)	477, 714, 920
GsuI	CTGGAG	1 cut(s)	618
HaeIII	GGCC	1 cut(s)	512
HapII	CCGG	6 cut(s)	185, 257, 509, 761, 840, 906
HgaI	GACGC	1 cut(s)	468
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	479
Hin1II	CATG	3 cut(s)	630, 854, 933
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HpaII	CCGG	6 cut(s)	185, 257, 509, 761, 840, 906
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	947
Hpy188I	TCNGA	6 cut(s)	253, 316, 559, 691, 769, 976
Hpy8I	GTNNAC	1 cut(s)	947
Hpy99I	CGWCG	1 cut(s)	892
HpyAV	CCTTC	4 cut(s)	86, 323, 691, 803
HpyCH4III	ACNGT	3 cut(s)	248, 403, 901
HpyCH4IV	ACGT	2 cut(s)	10, 648
HpyCH4V	TGCA	5 cut(s)	122, 722, 821, 919, 964
HpyF10VI	GCNNNNNNNGC	4 cut(s)	332, 341, 710, 719
HpyF3I	CTNAG	1 cut(s)	861
HpySE526I	ACGT	2 cut(s)	10, 648
Hsp92I	GRCGYC	1 cut(s)	479
Hsp92II	CATG	3 cut(s)	630, 854, 933
HspAI	GCGC	1 cut(s)	168
KroI	GCCGGC	1 cut(s)	508
KroNI	GCCGGC	1 cut(s)	510
Kzo9I	GATC	7 cut(s)	124, 427, 598, 741, 847, 864, 971
LguI	GCTCTTC	1 cut(s)	765
LmnI	GCTCC	2 cut(s)	106, 637
Lsp1109I	GCAGC	2 cut(s)	700, 931
LweI	GCATC	2 cut(s)	550, 826
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	2 cut(s)	10, 648
MaeIII	GTNAC	2 cut(s)	756, 895
MalI	GATC	7 cut(s)	126, 429, 600, 743, 849, 866, 973
MboI	GATC	7 cut(s)	124, 427, 598, 741, 847, 864, 971
MflI	RGATCY	3 cut(s)	124, 864, 971
MhlI	GDGCHC	2 cut(s)	337, 634
MluCI	AATT	3 cut(s)	777, 937, 957
MlyI	GAGTC	2 cut(s)	194, 942
MmeI	TCCRAC	1 cut(s)	141
MroNI	GCCGGC	1 cut(s)	508
MroXI	GAANNNNTTC	3 cut(s)	177, 705, 813
MseI	TTAA	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	833
MspI	CCGG	6 cut(s)	185, 257, 509, 761, 840, 906
MspR9I	CCNGG	1 cut(s)	841
MvnI	CGCG	2 cut(s)	273, 476
MwoI	GCNNNNNNNGC	4 cut(s)	332, 341, 710, 719
NaeI	GCCGGC	1 cut(s)	510
NciI	CCSGG	1 cut(s)	841
NdeII	GATC	7 cut(s)	124, 427, 598, 741, 847, 864, 971
NgoMIV	GCCGGC	1 cut(s)	508
NlaIII	CATG	3 cut(s)	630, 854, 933
NlaIV	GGNNCC	3 cut(s)	370, 708, 816
NspV	TTCGAA	2 cut(s)	149, 954
PaeR7I	CTCGAG	1 cut(s)	336
PciSI	GCTCTTC	1 cut(s)	765
PdiI	GCCGGC	1 cut(s)	510
PdmI	GAANNNNTTC	3 cut(s)	177, 705, 813
PfeI	GAWTC	9 cut(s)	143, 218, 287, 350, 407, 500, 623, 785, 827
PinAI	ACCGGT	1 cut(s)	760
PkrI	GCNGC	3 cut(s)	478, 715, 921
PleI	GAGTC	2 cut(s)	194, 942
PpsI	GAGTC	2 cut(s)	194, 942
PspN4I	GGNNCC	3 cut(s)	370, 708, 816
PspPI	GGNCC	1 cut(s)	369
PspXI	VCTCGAGB	1 cut(s)	336
PstI	CTGCAG	3 cut(s)	124, 823, 921
PsuI	RGATCY	3 cut(s)	124, 864, 971
PvuII	CAGCTG	1 cut(s)	833
RsaI	GTAC	2 cut(s)	416, 796
RsaNI	GTAC	2 cut(s)	415, 795
SapI	GCTCTTC	1 cut(s)	765
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	3 cut(s)	477, 714, 920
Sau3AI	GATC	7 cut(s)	124, 427, 598, 741, 847, 864, 971
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	2 cut(s)	194, 942
ScrFI	CCNGG	1 cut(s)	841
SduI	GDGCHC	2 cut(s)	337, 634
SfaNI	GCATC	2 cut(s)	550, 826
SfcI	CTRYAG	3 cut(s)	120, 819, 917
Sfr274I	CTCGAG	1 cut(s)	336
SfuI	TTCGAA	2 cut(s)	149, 954
SinI	GGWCC	1 cut(s)	369
SlaI	CTCGAG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	336
SmoI	CTYRAG	1 cut(s)	336
Sse9I	AATT	3 cut(s)	777, 937, 957
SsiI	CCGC	7 cut(s)	58, 140, 271, 326, 476, 563, 704
SspMI	CTAG	1 cut(s)	587
StyD4I	CCNGG	1 cut(s)	839
StyI	CCWWGG	2 cut(s)	453, 609
TaaI	ACNGT	3 cut(s)	248, 403, 901
TaiI	ACGT	2 cut(s)	13, 651
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	3 cut(s)	777, 937, 957
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	1 cut(s)	479
TfiI	GAWTC	9 cut(s)	143, 218, 287, 350, 407, 500, 623, 785, 827
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TseI	GCWGC	2 cut(s)	713, 919
TspDTI	ATGAA	2 cut(s)	333, 777
TspGWI	ACGGA	2 cut(s)	533, 876
VpaK11BI	GGWCC	1 cut(s)	369
XapI	RAATTY	1 cut(s)	957
XhoI	CTCGAG	1 cut(s)	336
XmnI	GAANNNNTTC	3 cut(s)	177, 705, 813
XspI	CTAG	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.