Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013124

Physical Location & Seq

Genomic Coordinates Forward (+)

30276754 .. 30279317

Gene Structure 2564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGGTCCTCCCAATAGTACTTCTGAAGCTCGCAGACTGGGTTTGGTACCAGCTGTTAGCAAATTCATGTCGCAGAGCAGCAAGGAAAGTCAGAAACTATAAGCCCCCCCAACCTCAACCTCCTTCTTTCCCTAGTATTGCCAAGTGTGAGATAACTGGTAGAAAGTCCCAGACACTTGTTTGTGACATTTTCGGAGGGCTTTTGAGATCAGACTCTGTGTTTCCTTACTTCATGTTGGTTGCTTTTGAAGGTGGTAGCATTATTAGAGCCTTTCTGTTGTTGCTGTCATGCTCTTTTTTGTGGGTTTTGGACTATGAACTCCAATTAAGGGTCATGATTTTCATAACCTTTTGCGGGCTCAAGATTAAGCAAATGGAGAGTGTTGGAAGGGCTGTGTTGCCCAAGTTTTATCTTGAAAATCTTAATCTTCACGCCTATGAGGCTTTGGCTTCAACTGGGTCTAAGGTGATTTTCACTAGTGTCCCTAGAGTCATGGTGGAAGGGTTCCTCAAGGAGTATTTGGAGGTTGATGATGTTAAGGGAACTGAGCTGCTCACTTCTGGGCATTACTTCACTGGTTTGTTGTCTAAATCTGGTCTGCTTATGAAGCACAGAGCTCTGAAGGAACATTTTGGTGATAGAAAACCAGATATTGGACTCGGAACTTCAAGCCACCATGATAATCTCTTCATCTCTCTTTGCAAGGAAGCTTATGTAGTGAACAGGGATGACAGCAAGAGCAATTCAAGTAGTTCATCAGTGTTGCCAAGGCACAGATACCCCAAGCCCTTAATATTCCATGATGGAAGGCTAGCTTTCTTACCTAGTCCATTAGCAACTCTCTCAATGTTCTTGTGGATACCAATTGGAATAGTCATAGCCATATTCAGAATCTCAGTGGGTATCTTCCTTCCCTACAAACTTGCACTCTTCTTAGCCACCTGCACTGGTCTGAATCTATCTGTCAAGGGTTTAGACACTTCAACAAAATCAGACCATGAAAATAGAGGAGTCCTCTATGTATGTACCCACAGAACACTTCTAGACCCAGTTTTCCTCAGCACATCTCTTGCCAAGCCCTTGACCGCTGTCACATACAGCCTAAGCAAAATGTCGGAGGTCATAGCCCCGATTAGGACAGTGAGGTTAACAAGAGACAGGAAGAAAGATGGAGAAACCATGAACAAGTTGCTTAGTGAAGGTGACTTGGTGGTGTGTCCTGAGGGTACAACATGTAGAGAGCCCTATCTGTTGAGGTTTAGTTCACTGTTTGCTGAATTGGCTGATGAGATTGTGCCTGTGGCTGTCAACACGAAGGTGAGTATGTTCTATGGGACTACAGCCAGCGGGCTCAAATGTCTGGATCCTATTTTCTTCTTGATGAACCCGAGACCTGTGTATTATGTTGAAATATTAGGCAAGTTACCAAAAGAGCTGACTTGTGCTGGTGGAAAATCGAGCTGTGAAGTTGCGAATTATATACAGAGGAAGCTGGGTGATGCTTTGGGGTTTGAGTGTACCACTCTTACAAGGAAGGACAAGTATTTGATGCTGGCTGGGAATGAAGGAATAGTCAGTGATAGTAAGAGGAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006793 GO:0006796 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009555 GO:0009628 GO:0009987 GO:0010143 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050896 GO:0051704 GO:0055046 GO:0071704 GO:0080167 GO:0090447 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase HAD

Protein Analysis

533

Amino Acids

59.38

Weight (kDa)

9.19

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_RAM2_N	PF23270	58 - 240	2.1e-66	Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
HAD	PF12710	60 - 221	4.5e-09	haloacid dehalogenase-like hydrolase
Acyltransferase	PF01553	330 - 435	1.9e-08	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06520
fragaria_vesca	FvH4_6g38270
malus_domestica	MD09G1151400.v1.1 MD17G1139100.v1.1
prunus_persica	Prupe.3G173300_v2.0.a1
pyrus_communis	pycom09g07110 pycom17g13220
rosa_chinensis	RchiOBHm_Chr2g0151571
rosa_laevigata	RLG00000020559
rosa_multiflora	Rmu_sc0000940.1_g000032 Rmu_sc0000940.1_g000033
rosa_roxburghii	Rroxscaffold_2G00096350
rosa_rugosa	Rorug02G0426900
rosa_samantha	Rh2AG487700 Rh2BG500200 Rh2CG474200 Rh2DG511400
rosa_wichuraiana	Rw2G039980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	950
Acc36I	ACCTGC	1 cut(s)	950
Acc65I	GGTACC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	45
AccB7I	CCANNNNNTGG	1 cut(s)	653
AciI	CCGC	3 cut(s)	354, 1086, 1347
AclWI	GGATC	2 cut(s)	1358, 1371
AcsI	RAATTY	1 cut(s)	61
AcuI	CTGAAG	2 cut(s)	44, 641
AfaI	GTAC	5 cut(s)	18, 47, 1027, 1228, 1519
AfiI	CCNNNNNNNGG	4 cut(s)	328, 354, 653, 1134
AflIII	ACRYGT	1 cut(s)	1232
AgsI	TTSAA	7 cut(s)	248, 416, 453, 669, 747, 984, 1409
AhlI	ACTAGT	1 cut(s)	476
AleI	CACNNNNGTG	1 cut(s)	1316
AluBI	AGCT	9 cut(s)	28, 52, 550, 617, 710, 815, 1435, 1461, 1492
AluI	AGCT	9 cut(s)	28, 52, 550, 617, 710, 815, 1435, 1461, 1492
Alw21I	GWGCWC	1 cut(s)	619
Alw26I	GTCTC	2 cut(s)	1149, 1384
AlwI	GGATC	2 cut(s)	1358, 1371
AlwNI	CAGNNNCTG	1 cut(s)	215
Ama87I	CYCGRG	1 cut(s)	1387
ApeKI	GCWGC	2 cut(s)	77, 550
ApoI	RAATTY	1 cut(s)	61
Asp718I	GGTACC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	5 cut(s)	478, 647, 1214, 1330, 1508
AsuNHI	GCTAGC	1 cut(s)	811
AvaI	CYCGRG	1 cut(s)	1387
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	1221
BamHI	GGATCC	1 cut(s)	1363
BanI	GGYRCC	1 cut(s)	45
BanII	GRGCYC	4 cut(s)	360, 619, 1245, 1353
Bbv12I	GWGCWC	1 cut(s)	619
BbvCI	CCTCAGC	1 cut(s)	1058
BbvI	GCAGC	2 cut(s)	89, 537
BccI	CCATC	2 cut(s)	797, 1163
BciVI	GTATCC	1 cut(s)	852
BcoDI	GTCTC	2 cut(s)	1149, 1384
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	6 cut(s)	132, 477, 486, 812, 825, 1043
BfmI	CTRYAG	1 cut(s)	1338
BfuAI	ACCTGC	1 cut(s)	950
BfuI	GTATCC	1 cut(s)	852
BglI	GCCNNNNNGGC	1 cut(s)	440
BisI	GCNGC	2 cut(s)	78, 551
BlsI	GCNGC	2 cut(s)	79, 552
BmcAI	AGTACT	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	1387
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	47, 506, 1365
BmrI	ACTGGG	3 cut(s)	46, 465, 1043
BmsI	GCATC	2 cut(s)	1489, 1539
BmtI	GCTAGC	1 cut(s)	815
BmuI	ACTGGG	3 cut(s)	46, 465, 1043
BoxI	GACNNNNGTC	1 cut(s)	1088
BplI	GAGNNNNNCTC	2 cut(s)	999, 1031
Bpu10I	CCTNAGC	2 cut(s)	1058, 1103
BpuEI	CTTGAG	2 cut(s)	344, 494
BsaI	GGTCTC	1 cut(s)	1384
BsaJI	CCNNGG	1 cut(s)	767
Bsc4I	CCNNNNNNNGG	4 cut(s)	328, 354, 653, 1134
Bse1I	ACTGG	6 cut(s)	41, 160, 460, 580, 952, 1049
Bse21I	CCTNAGG	1 cut(s)	1221
BseDI	CCNNGG	1 cut(s)	767
BseGI	GGATG	1 cut(s)	733
BseLI	CCNNNNNNNGG	4 cut(s)	328, 354, 653, 1134
BseMII	CTCAG	4 cut(s)	537, 909, 1072, 1212
BseNI	ACTGG	6 cut(s)	41, 160, 460, 580, 952, 1049
BseRI	GAGGAG	1 cut(s)	1023
BseXI	GCAGC	2 cut(s)	89, 537
BseYI	CCCAGC	2 cut(s)	1492, 1556
BsgI	GTGCAG	1 cut(s)	928
BshNI	GGYRCC	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	619
BsiHKCI	CYCGRG	1 cut(s)	1387
BslFI	GGGAC	3 cut(s)	151, 467, 1348
BslI	CCNNNNNNNGG	4 cut(s)	328, 354, 653, 1134
BsmAI	GTCTC	2 cut(s)	1149, 1384
BsmFI	GGGAC	3 cut(s)	151, 467, 1348
Bso31I	GGTCTC	1 cut(s)	1384
BsoBI	CYCGRG	1 cut(s)	1387
Bsp1286I	GDGCHC	4 cut(s)	360, 619, 1245, 1353
Bsp143I	GATC	2 cut(s)	206, 1363
BspACI	CCGC	3 cut(s)	354, 1086, 1347
BspCNI	CTCAG	4 cut(s)	538, 908, 1071, 1213
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	3 cut(s)	47, 506, 1365
BspMI	ACCTGC	1 cut(s)	950
BspOI	GCTAGC	1 cut(s)	815
BspPI	GGATC	2 cut(s)	1358, 1371
BspT107I	GGYRCC	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	1384
BsrI	ACTGG	6 cut(s)	41, 160, 460, 580, 952, 1049
BssECI	CCNNGG	1 cut(s)	767
BssMI	GATC	2 cut(s)	206, 1363
BssT1I	CCWWGG	1 cut(s)	767
Bst4CI	ACNGT	2 cut(s)	1141, 1269
Bst6I	CTCTTC	2 cut(s)	692, 935
BstC8I	GCNNGC	6 cut(s)	30, 356, 813, 1345, 1349, 1554
BstDEI	CTNAG	8 cut(s)	462, 546, 895, 934, 1058, 1103, 1193, 1221
BstF5I	GGATG	1 cut(s)	733
BstKTI	GATC	2 cut(s)	209, 1366
BstMAI	GTCTC	2 cut(s)	1149, 1384
BstMBI	GATC	2 cut(s)	206, 1363
BstMWI	GCNNNNNNNGC	3 cut(s)	440, 607, 1280
BstNSI	RCATGY	1 cut(s)	1236
BstPAI	GACNNNNGTC	1 cut(s)	1088
BstSFI	CTRYAG	1 cut(s)	1338
BstV1I	GCAGC	2 cut(s)	89, 537
BstX2I	RGATCY	1 cut(s)	1363
BstYI	RGATCY	1 cut(s)	1363
Bsu36I	CCTNAGG	1 cut(s)	1221
BsuI	GTATCC	1 cut(s)	852
BtsCI	GGATG	1 cut(s)	733
BtsIMutI	CAGTG	7 cut(s)	573, 765, 903, 945, 1146, 1265, 1582
BveI	ACCTGC	1 cut(s)	950
Cac8I	GCNNGC	6 cut(s)	30, 356, 813, 1345, 1349, 1554
CaiI	CAGNNNCTG	1 cut(s)	215
CciI	TCATGA	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	5 cut(s)	17, 46, 1026, 1227, 1518
CviQI	GTAC	5 cut(s)	17, 46, 1026, 1227, 1518
DdeI	CTNAG	8 cut(s)	462, 546, 895, 934, 1058, 1103, 1193, 1221
DpnI	GATC	2 cut(s)	208, 1365
DpnII	GATC	2 cut(s)	206, 1363
Eam1104I	CTCTTC	2 cut(s)	692, 935
EarI	CTCTTC	2 cut(s)	692, 935
Ecl136II	GAGCTC	1 cut(s)	617
Eco130I	CCWWGG	1 cut(s)	767
Eco24I	GRGCYC	4 cut(s)	360, 619, 1245, 1353
Eco31I	GGTCTC	1 cut(s)	1384
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	617
Eco57I	CTGAAG	2 cut(s)	44, 641
Eco81I	CCTNAGG	1 cut(s)	1221
Eco88I	CYCGRG	1 cut(s)	1387
EcoICRI	GAGCTC	1 cut(s)	617
EcoT14I	CCWWGG	1 cut(s)	767
EcoT38I	GRGCYC	4 cut(s)	360, 619, 1245, 1353
ErhI	CCWWGG	1 cut(s)	767
FalI	AAGNNNNNCTT	2 cut(s)	799, 831
FaqI	GGGAC	3 cut(s)	151, 467, 1348
FauI	CCCGC	2 cut(s)	347, 1340
Fnu4HI	GCNGC	2 cut(s)	78, 551
FokI	GGATG	1 cut(s)	740
FriOI	GRGCYC	4 cut(s)	360, 619, 1245, 1353
Fsp4HI	GCNGC	2 cut(s)	78, 551
FspBI	CTAG	6 cut(s)	132, 477, 486, 812, 825, 1043
GluI	GCNGC	2 cut(s)	78, 551
GsaI	CCCAGC	2 cut(s)	1496, 1560
HincII	GTYRAC	2 cut(s)	1149, 1309
HindII	GTYRAC	2 cut(s)	1149, 1309
HindIII	AAGCTT	1 cut(s)	708
HinfI	GANTC	6 cut(s)	212, 489, 657, 891, 955, 1011
HpaI	GTTAAC	1 cut(s)	1149
HphI	GGTGA	5 cut(s)	478, 647, 1214, 1330, 1508
Hpy166II	GTNNAC	5 cut(s)	721, 1149, 1265, 1309, 1518
Hpy188III	TCNNGA	7 cut(s)	334, 361, 413, 1043, 1220, 1361, 1378
Hpy8I	GTNNAC	5 cut(s)	721, 1149, 1265, 1309, 1518
HpyCH4III	ACNGT	2 cut(s)	1141, 1269
HpyCH4V	TGCA	3 cut(s)	702, 926, 945
HpyF10VI	GCNNNNNNNGC	3 cut(s)	440, 607, 1280
HpyF3I	CTNAG	8 cut(s)	462, 546, 895, 934, 1058, 1103, 1193, 1221
KpnI	GGTACC	1 cut(s)	49
KspAI	GTTAAC	1 cut(s)	1149
Kzo9I	GATC	2 cut(s)	206, 1363
Lsp1109I	GCAGC	2 cut(s)	89, 537
LweI	GCATC	2 cut(s)	1489, 1539
MaeI	CTAG	6 cut(s)	132, 477, 486, 812, 825, 1043
MaeIII	GTNAC	4 cut(s)	182, 1090, 1202, 1422
MalI	GATC	2 cut(s)	208, 1365
MboI	GATC	2 cut(s)	206, 1363
MboII	GAAGA	6 cut(s)	419, 679, 898, 922, 1174, 1366
MfeI	CAATTG	1 cut(s)	864
MflI	RGATCY	1 cut(s)	1363
MhlI	GDGCHC	4 cut(s)	360, 619, 1245, 1353
MluCI	AATT	7 cut(s)	61, 323, 742, 864, 1277, 1474, 1594
MlyI	GAGTC	4 cut(s)	206, 498, 651, 1020
MmeI	TCCRAC	2 cut(s)	364, 1095
MseI	TTAA	6 cut(s)	326, 366, 423, 537, 791, 1148
MslI	CAYNNNNRTG	3 cut(s)	435, 633, 1316
MspA1I	CMGCKG	3 cut(s)	52, 1088, 1347
MunI	CAATTG	1 cut(s)	864
MwoI	GCNNNNNNNGC	3 cut(s)	440, 607, 1280
NdeII	GATC	2 cut(s)	206, 1363
NheI	GCTAGC	1 cut(s)	811
NlaIV	GGNNCC	3 cut(s)	47, 506, 1365
NmuCI	GTSAC	3 cut(s)	182, 1090, 1202
NspI	RCATGY	1 cut(s)	1236
OliI	CACNNNNGTG	1 cut(s)	1316
PagI	TCATGA	1 cut(s)	333
PaqCI	CACCTGC	1 cut(s)	950
PciI	ACATGT	1 cut(s)	1232
PfeI	GAWTC	2 cut(s)	891, 955
PflMI	CCANNNNNTGG	1 cut(s)	653
PkrI	GCNGC	2 cut(s)	79, 552
PleI	GAGTC	4 cut(s)	206, 497, 651, 1019
PpsI	GAGTC	4 cut(s)	206, 497, 651, 1019
PscI	ACATGT	1 cut(s)	1232
PshAI	GACNNNNGTC	1 cut(s)	1088
Psp124BI	GAGCTC	1 cut(s)	619
PspFI	CCCAGC	2 cut(s)	1492, 1556
PspN4I	GGNNCC	3 cut(s)	47, 506, 1365
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	1363
PvuII	CAGCTG	1 cut(s)	52
RsaI	GTAC	5 cut(s)	18, 47, 1027, 1228, 1519
RsaNI	GTAC	5 cut(s)	17, 46, 1026, 1227, 1518
RseI	CAYNNNNRTG	3 cut(s)	435, 633, 1316
SacI	GAGCTC	1 cut(s)	619
SaqAI	TTAA	6 cut(s)	326, 366, 423, 537, 791, 1148
SatI	GCNGC	2 cut(s)	78, 551
Sau3AI	GATC	2 cut(s)	206, 1363
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	18
SchI	GAGTC	4 cut(s)	206, 498, 651, 1020
SduI	GDGCHC	4 cut(s)	360, 619, 1245, 1353
SfaNI	GCATC	2 cut(s)	1489, 1539
SfcI	CTRYAG	1 cut(s)	1338
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	3 cut(s)	435, 633, 1316
SmlI	CTYRAG	2 cut(s)	359, 509
SmoI	CTYRAG	2 cut(s)	359, 509
SpeI	ACTAGT	1 cut(s)	476
Sse9I	AATT	7 cut(s)	61, 323, 742, 864, 1277, 1474, 1594
SsiI	CCGC	3 cut(s)	354, 1086, 1347
SspI	AATATT	2 cut(s)	795, 1413
SspMI	CTAG	6 cut(s)	132, 477, 486, 812, 825, 1043
SstI	GAGCTC	1 cut(s)	619
StyI	CCWWGG	1 cut(s)	767
TaaI	ACNGT	2 cut(s)	1141, 1269
TaqI	TCGA	1 cut(s)	1457
TasI	AATT	7 cut(s)	61, 323, 742, 864, 1277, 1474, 1594
TatI	WGTACW	1 cut(s)	16
TfiI	GAWTC	2 cut(s)	891, 955
Tru1I	TTAA	6 cut(s)	326, 366, 423, 537, 791, 1148
Tru9I	TTAA	6 cut(s)	326, 366, 423, 537, 791, 1148
TscAI	CASTG	7 cut(s)	580, 765, 903, 952, 1146, 1272, 1582
TseFI	GTSAC	3 cut(s)	182, 1090, 1202
TseI	GCWGC	2 cut(s)	77, 550
Tsp45I	GTSAC	3 cut(s)	182, 1090, 1202
TspRI	CASTG	7 cut(s)	580, 765, 903, 952, 1146, 1272, 1582
Van91I	CCANNNNNTGG	1 cut(s)	653
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	61
XbaI	TCTAGA	1 cut(s)	1042
XceI	RCATGY	1 cut(s)	1236
XspI	CTAG	6 cut(s)	132, 477, 486, 812, 825, 1043
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.