pycom17g13220

glycerol-3-phosphate acyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
10870012 .. 10872517
2506 bp
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UTR
Exon/CDS
Intron
pycom17g13220.1

Sequence Viewer

Length: 1614 bp
ATGGTTCTTCTCAAACTCACAGATGGGGTTTTGTACCAGCCGCTGGCAAACACATGCCAAAGAGCTGCAAGAAAAGTGAGAAACTATGGCTCCCTCGTAGGCAATTCTCCTCCTCTCACCTCACCGCAAAAAGAACCCTCTTCATTTCCCAGTTTCACAAAGTGTAATTTGGCGGGAAGAGACTGTGAGACAATTGCATGTGACATTTTTGGATCCCTTTTGAAATCCCAGTCTGTCTTTCCTTACTTCATGCTTGTTGCCTTTGAAGGTGGCAGCATTTTCAGAGCCCTTCTCTTGCTTCTATCGTACCCGGTTTTGCTGGTTTTCGACTATGAGTACAGATTAAGGGTTATGATTTTCTTCACTTTTTGTGGTCTCAGAAAAAAAGATATGGAGAGTGTTGGAAGGGCTGTTTTGCCCAAGTTTTATCAGGAAAATCTCAACCTTCAGGCCTATGATGTTTTTGCCTCAGCGGGATTTAGGGTTGTCCTCACAAGTGTCCCTAGAGTCATGGTTGAACATTTTCTTAAGGATTATATGGAAGTTGGTGATGTTTTGGGGACTGAATTGCACACTGTTGGGCACTACTTCACTGGTTTGTTATCCGGCTCTGGTTTTCTTGTGAAGCACAATGCTCTCAAAAAATATTTTGGAGACAAAAGACCAGATATTGGAATTGGTTCTTCAAGCCTCGAAGATCATCTTTTTATCTCCCTTTGCAAGGAAGCCTACGTAGTGAACAAGGAAGACAACAAGAGCGGTACAAATTCAGCAATGCTTAGGCACAAGCAGCCAAACCCAGTAATATTTCACGATGGAAGGCTAGCATTCTTGCCTACTCCATCTGCAACCCTAGCCATGTTTTTGTGGCTCCCTCTTGGAATAATCCTAGCCATATTAAGAATCTCAATTGGCATTATCCTTCCCTGCAAAATTGCCCTATTTTTGGCCTCCTTGACAGGTGTCAATCTCTCAGTCAAAGGCTGCATCAACCCCACTTCCTCAAACCCAAAAAAAAAAGGAGTCCTCTATGTTTGCACACACAGAACCCTACTGGACCCAGTTTTCCTTAGTATGGCTTTGGGCAAGCCTTTAACAGCAGTCACATATAGCCTGAGCAAAATGTCCGAAATCATAGCGCCGATCAAGACAGTCCGATTAACCAGAGACCGAAAACAAGACGGTGAAACCATGGGGAGGCTACTTAGTGAAGGAGATTTGGTGGTTTGCCCCGAAGGAACAACTTGTCGAGAGCCGTATTTGCTGAGATTCAGCTCACTGTTTGCAGAACTGGCTGATGAGATTGTGCCAGTAGCCATCAACACAAATGTGAGCATGTTTTATGGGACTACAGCCAGTGGACTAAAATGCTTGGACCCAATTTTCTTCCTGATGAACCCTGGGCCTGCATATTATATTGAAGTTCTTGGGAGGCTCCCAAGAGAGCTGACTTGCGCTGGGGGAAAGTCTAGCAATGAAGTGGCTAATTACATTCAGAGGAAATTGGCTGATGCTTTGGGATTTGAGTGCACCTCTCTTACAAGGAGGGATAAATATTTGATGCTGGCTGGGAATGAAGGAATTGTCCCTGATAATAAGAGAAAGAAGCCTTAA

Protein Analysis

538

Amino Acids

59.38

Weight (kDa)

9.11

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAD_RAM2_N PF23270 64 - 246 1.4e-65 Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
HAD PF12710 68 - 225 9.4e-11 haloacid dehalogenase-like hydrolase
Acyltransferase PF01553 337 - 440 1.8e-09 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013124)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 43, 671
AccBSI CCGCTC 1 cut(s) 759
AciI CCGC 5 cut(s) 41, 125, 173, 473, 759
AclWI GGATC 2 cut(s) 207, 220
AcsI RAATTY 1 cut(s) 766
AcuI CTGAAG 1 cut(s) 431
AdeI CACNNNGTG 1 cut(s) 162
AfaI GTAC 4 cut(s) 35, 308, 338, 763
AfiI CCNNNNNNNGG 6 cut(s) 43, 671, 721, 946, 1075, 1197
AflII CTTAAG 1 cut(s) 527
AgsI TTSAA 5 cut(s) 223, 266, 518, 687, 1421
AjnI CCWGG 1 cut(s) 1399
AleI CACNNNNGTG 1 cut(s) 1328
AluBI AGCT 3 cut(s) 65, 1275, 1447
AluI AGCT 3 cut(s) 65, 1275, 1447
Alw21I GWGCWC 1 cut(s) 1532
Alw26I GTCTC 5 cut(s) 174, 182, 380, 648, 1161
Alw44I GTGCAC 1 cut(s) 1528
AlwI GGATC 2 cut(s) 207, 220
AlwNI CAGNNNCTG 1 cut(s) 43
AoxI GGCC 3 cut(s) 450, 948, 1403
ApaLI GTGCAC 1 cut(s) 1528
ApeKI GCWGC 4 cut(s) 65, 273, 790, 984
ApoI RAATTY 1 cut(s) 766
Asp700I GAANNNNTTC 2 cut(s) 522, 679
AspLEI GCGC 2 cut(s) 1141, 1457
AspS9I GGNCC 3 cut(s) 1057, 1375, 1403
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 4 cut(s) 109, 114, 560, 1196
AsuNHI GCTAGC 1 cut(s) 823
AvaII GGWCC 2 cut(s) 1057, 1375
BaeGI GKGCMC 2 cut(s) 585, 1532
BamHI GGATCC 1 cut(s) 212
BanII GRGCYC 1 cut(s) 289
BbsI GAAGAC 1 cut(s) 753
Bbv12I GWGCWC 1 cut(s) 1532
BbvCI CCTCAGC 1 cut(s) 469
BbvI GCAGC 4 cut(s) 52, 285, 802, 971
BccI CCATC 4 cut(s) 17, 809, 850, 1325
BceAI ACGGC 1 cut(s) 1240
BciT130I CCWGG 1 cut(s) 1401
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 5 cut(s) 174, 182, 380, 648, 1161
BfaI CTAG 5 cut(s) 504, 824, 854, 890, 1470
BfmI CTRYAG 1 cut(s) 1350
BfoI RGCGCY 1 cut(s) 1142
BfrI CTTAAG 1 cut(s) 527
BisI GCNGC 5 cut(s) 41, 66, 274, 791, 985
BlsI GCNGC 5 cut(s) 42, 67, 275, 792, 986
Bme1390I CCNGG 2 cut(s) 311, 1401
Bme18I GGWCC 2 cut(s) 1057, 1375
BmgT120I GGNCC 3 cut(s) 1057, 1375, 1403
BmiI GGNNCC 6 cut(s) 91, 214, 872, 1059, 1377, 1436
BmrFI CCNGG 2 cut(s) 311, 1401
BmrI ACTGGG 4 cut(s) 144, 223, 794, 1055
BmsI GCATC 3 cut(s) 996, 1501, 1551
BmtI GCTAGC 1 cut(s) 827
BmuI ACTGGG 4 cut(s) 144, 223, 794, 1055
BoxI GACNNNNGTC 1 cut(s) 962
BpiI GAAGAC 1 cut(s) 753
BplI GAGNNNNNCTC 4 cut(s) 276, 308, 1517, 1549
Bpu10I CCTNAGC 3 cut(s) 469, 779, 1115
BpuMI CCSGG 1 cut(s) 311
BsaAI YACGTR 1 cut(s) 733
BsaI GGTCTC 2 cut(s) 380, 1161
BsaJI CCNNGG 3 cut(s) 1191, 1399, 1400
BsaXI ACNNNNNCTCC 4 cut(s) 74, 104, 1206, 1236
Bsc4I CCNNNNNNNGG 6 cut(s) 43, 671, 721, 946, 1075, 1197
Bse1I ACTGG 9 cut(s) 150, 229, 598, 800, 1059, 1061, 1296, 1310, 1356
Bse3DI GCAATG 2 cut(s) 780, 1480
BseBI CCWGG 1 cut(s) 1401
BseDI CCNNGG 3 cut(s) 1191, 1399, 1400
BseLI CCNNNNNNNGG 6 cut(s) 43, 671, 721, 946, 1075, 1197
BseMI GCAATG 2 cut(s) 780, 1480
BseMII CTCAG 5 cut(s) 391, 483, 987, 1106, 1256
BseNI ACTGG 9 cut(s) 150, 229, 598, 800, 1059, 1061, 1296, 1310, 1356
BseRI GAGGAG 2 cut(s) 99, 102
BseSI GKGCMC 2 cut(s) 585, 1532
BseXI GCAGC 4 cut(s) 52, 285, 802, 971
BseYI CCCAGC 2 cut(s) 1457, 1568
BshFI GGCC 3 cut(s) 452, 950, 1405
BsiHKAI GWGCWC 1 cut(s) 1532
BsiSI CCGG 2 cut(s) 311, 606
BslFI GGGAC 4 cut(s) 485, 574, 1360, 1571
BslI CCNNNNNNNGG 6 cut(s) 43, 671, 721, 946, 1075, 1197
BsmAI GTCTC 5 cut(s) 174, 182, 380, 648, 1161
BsmFI GGGAC 4 cut(s) 485, 574, 1360, 1571
BsmI GAATGC 1 cut(s) 827
BsnI GGCC 3 cut(s) 452, 950, 1405
Bso31I GGTCTC 2 cut(s) 380, 1161
Bsp1286I GDGCHC 3 cut(s) 289, 585, 1532
Bsp143I GATC 3 cut(s) 212, 697, 1143
Bsp19I CCATGG 1 cut(s) 1191
BspACI CCGC 5 cut(s) 41, 125, 173, 473, 759
BspANI GGCC 3 cut(s) 452, 950, 1405
BspCNI CTCAG 5 cut(s) 390, 482, 986, 1107, 1257
BspLI GGNNCC 6 cut(s) 91, 214, 872, 1059, 1377, 1436
BspOI GCTAGC 1 cut(s) 827
BspPI GGATC 2 cut(s) 207, 220
BspTI CTTAAG 1 cut(s) 527
BspTNI GGTCTC 2 cut(s) 380, 1161
BsrBI CCGCTC 1 cut(s) 759
BsrDI GCAATG 2 cut(s) 780, 1480
BsrI ACTGG 9 cut(s) 150, 229, 598, 800, 1059, 1061, 1296, 1310, 1356
BssECI CCNNGG 3 cut(s) 1191, 1399, 1400
BssMI GATC 3 cut(s) 212, 697, 1143
BssT1I CCWWGG 1 cut(s) 1191
Bst2UI CCWGG 1 cut(s) 1401
Bst4CI ACNGT 5 cut(s) 185, 577, 1153, 1184, 1281
Bst6I CTCTTC 2 cut(s) 145, 172
BstAFI CTTAAG 1 cut(s) 527
BstBAI YACGTR 1 cut(s) 733
BstC8I GCNNGC 5 cut(s) 45, 825, 1088, 1407, 1566
BstDEI CTNAG 8 cut(s) 377, 469, 779, 973, 1070, 1115, 1205, 1265
BstDSI CCRYGG 1 cut(s) 1191
BstENI CCTNNNNNAGG 1 cut(s) 719
BstH2I RGCGCY 1 cut(s) 1142
BstHHI GCGC 2 cut(s) 1141, 1457
BstKTI GATC 3 cut(s) 215, 700, 1146
BstMAI GTCTC 5 cut(s) 174, 182, 380, 648, 1161
BstMBI GATC 3 cut(s) 212, 697, 1143
BstMWI GCNNNNNNNGC 4 cut(s) 790, 854, 1261, 1292
BstNI CCWGG 1 cut(s) 1401
BstNSI RCATGY 3 cut(s) 57, 201, 1339
BstPAI GACNNNNGTC 1 cut(s) 962
BstSCI CCNGG 2 cut(s) 309, 1399
BstSFI CTRYAG 1 cut(s) 1350
BstSLI GKGCMC 2 cut(s) 585, 1532
BstSNI TACGTA 1 cut(s) 733
BstV1I GCAGC 4 cut(s) 52, 285, 802, 971
BstV2I GAAGAC 1 cut(s) 753
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
BsuRI GGCC 3 cut(s) 452, 950, 1405
BtgI CCRYGG 1 cut(s) 1191
BtsIMutI CAGTG 4 cut(s) 573, 591, 1277, 1363
Cac8I GCNNGC 5 cut(s) 45, 825, 1088, 1407, 1566
CaiI CAGNNNCTG 1 cut(s) 43
CfoI GCGC 2 cut(s) 1141, 1457
Cfr13I GGNCC 3 cut(s) 1057, 1375, 1403
Csp6I GTAC 4 cut(s) 34, 307, 337, 762
CviAII CATG 7 cut(s) 54, 198, 250, 511, 859, 1192, 1336
CviQI GTAC 4 cut(s) 34, 307, 337, 762
DdeI CTNAG 8 cut(s) 377, 469, 779, 973, 1070, 1115, 1205, 1265
DpnI GATC 3 cut(s) 214, 699, 1145
DpnII GATC 3 cut(s) 212, 697, 1143
DraIII CACNNNGTG 1 cut(s) 162
Eam1104I CTCTTC 2 cut(s) 145, 172
EarI CTCTTC 2 cut(s) 145, 172
Eco105I TACGTA 1 cut(s) 733
Eco130I CCWWGG 1 cut(s) 1191
Eco147I AGGCCT 1 cut(s) 452
Eco24I GRGCYC 1 cut(s) 289
Eco31I GGTCTC 2 cut(s) 380, 1161
Eco47I GGWCC 2 cut(s) 1057, 1375
Eco57I CTGAAG 1 cut(s) 431
EcoNI CCTNNNNNAGG 1 cut(s) 719
EcoRII CCWGG 1 cut(s) 1399
EcoT14I CCWWGG 1 cut(s) 1191
EcoT38I GRGCYC 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 1191
FaeI CATG 7 cut(s) 57, 201, 253, 514, 862, 1195, 1339
FalI AAGNNNNNCTT 2 cut(s) 687, 719
FaqI GGGAC 4 cut(s) 485, 574, 1360, 1571
FatI CATG 7 cut(s) 53, 197, 249, 510, 858, 1191, 1335
FauI CCCGC 2 cut(s) 166, 466
Fnu4HI GCNGC 5 cut(s) 41, 66, 274, 791, 985
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 5 cut(s) 41, 66, 274, 791, 985
FspBI CTAG 5 cut(s) 504, 824, 854, 890, 1470
GlaI GCGC 2 cut(s) 1140, 1456
GluI GCNGC 5 cut(s) 41, 66, 274, 791, 985
GsaI CCCAGC 2 cut(s) 1461, 1572
HaeII RGCGCY 1 cut(s) 1142
HaeIII GGCC 3 cut(s) 452, 950, 1405
HapII CCGG 2 cut(s) 311, 606
HhaI GCGC 2 cut(s) 1141, 1457
Hin1II CATG 7 cut(s) 57, 201, 253, 514, 862, 1195, 1339
Hin6I GCGC 2 cut(s) 1139, 1455
HinP1I GCGC 2 cut(s) 1139, 1455
HinfI GANTC 4 cut(s) 507, 903, 1023, 1269
HpaII CCGG 2 cut(s) 311, 606
HphI GGTGA 4 cut(s) 109, 114, 560, 1196
Hpy166II GTNNAC 3 cut(s) 739, 1361, 1530
Hpy188I TCNGA 5 cut(s) 284, 380, 1129, 1157, 1497
Hpy188III TCNNGA 5 cut(s) 431, 812, 1147, 1250, 1390
Hpy8I GTNNAC 3 cut(s) 739, 1361, 1530
HpyAV CCTTC 9 cut(s) 260, 299, 399, 455, 813, 932, 1205, 1229, 1571
HpyCH4III ACNGT 5 cut(s) 185, 577, 1153, 1184, 1281
HpyCH4IV ACGT 1 cut(s) 732
HpyF10VI GCNNNNNNNGC 4 cut(s) 790, 854, 1261, 1292
HpyF3I CTNAG 8 cut(s) 377, 469, 779, 973, 1070, 1115, 1205, 1265
HpySE526I ACGT 1 cut(s) 732
Hsp92II CATG 7 cut(s) 57, 201, 253, 514, 862, 1195, 1339
HspAI GCGC 2 cut(s) 1139, 1455
Kzo9I GATC 3 cut(s) 212, 697, 1143
LmnI GCTCC 3 cut(s) 95, 876, 1440
Lsp1109I GCAGC 4 cut(s) 52, 285, 802, 971
LweI GCATC 3 cut(s) 996, 1501, 1551
MaeI CTAG 5 cut(s) 504, 824, 854, 890, 1470
MaeII ACGT 1 cut(s) 732
MaeIII GTNAC 2 cut(s) 200, 1102
MalI GATC 3 cut(s) 214, 699, 1145
MbiI CCGCTC 1 cut(s) 759
MboI GATC 3 cut(s) 212, 697, 1143
MboII GAAGA 7 cut(s) 132, 189, 352, 675, 707, 758, 1378
MfeI CAATTG 2 cut(s) 192, 909
MflI RGATCY 1 cut(s) 212
MhlI GDGCHC 3 cut(s) 289, 585, 1532
MlyI GAGTC 2 cut(s) 516, 1032
MmeI TCCRAC 1 cut(s) 382
MroXI GAANNNNTTC 2 cut(s) 522, 679
MseI TTAA 6 cut(s) 344, 528, 899, 1094, 1160, 1612
MslI CAYNNNNRTG 1 cut(s) 1328
MspA1I CMGCKG 2 cut(s) 43, 473
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 2 cut(s) 311, 606
MspR9I CCNGG 2 cut(s) 311, 1401
MunI CAATTG 2 cut(s) 192, 909
Mva1269I GAATGC 1 cut(s) 827
MvaI CCWGG 1 cut(s) 1401
MwoI GCNNNNNNNGC 4 cut(s) 790, 854, 1261, 1292
NciI CCSGG 1 cut(s) 311
NcoI CCATGG 1 cut(s) 1191
NdeII GATC 3 cut(s) 212, 697, 1143
NheI GCTAGC 1 cut(s) 823
NlaIII CATG 7 cut(s) 57, 201, 253, 514, 862, 1195, 1339
NlaIV GGNNCC 6 cut(s) 91, 214, 872, 1059, 1377, 1436
NmuCI GTSAC 2 cut(s) 200, 1102
NspI RCATGY 3 cut(s) 57, 201, 1339
OliI CACNNNNGTG 1 cut(s) 1328
PasI CCCWGGG 1 cut(s) 1400
PceI AGGCCT 1 cut(s) 452
PctI GAATGC 1 cut(s) 827
PdmI GAANNNNTTC 2 cut(s) 522, 679
PfeI GAWTC 2 cut(s) 903, 1269
PflMI CCANNNNNTGG 2 cut(s) 43, 671
PkrI GCNGC 5 cut(s) 42, 67, 275, 792, 986
PleI GAGTC 2 cut(s) 515, 1031
PpsI GAGTC 2 cut(s) 515, 1031
Ppu21I YACGTR 1 cut(s) 733
PshAI GACNNNNGTC 1 cut(s) 962
Psp6I CCWGG 1 cut(s) 1399
PspFI CCCAGC 2 cut(s) 1457, 1568
PspGI CCWGG 1 cut(s) 1399
PspN4I GGNNCC 6 cut(s) 91, 214, 872, 1059, 1377, 1436
PspPI GGNCC 3 cut(s) 1057, 1375, 1403
PstNI CAGNNNCTG 1 cut(s) 43
PsuI RGATCY 1 cut(s) 212
RsaI GTAC 4 cut(s) 35, 308, 338, 763
RsaNI GTAC 4 cut(s) 34, 307, 337, 762
RseI CAYNNNNRTG 1 cut(s) 1328
SaqAI TTAA 6 cut(s) 344, 528, 899, 1094, 1160, 1612
SatI GCNGC 5 cut(s) 41, 66, 274, 791, 985
Sau3AI GATC 3 cut(s) 212, 697, 1143
Sau96I GGNCC 3 cut(s) 1057, 1375, 1403
SchI GAGTC 2 cut(s) 516, 1032
ScrFI CCNGG 2 cut(s) 311, 1401
SduI GDGCHC 3 cut(s) 289, 585, 1532
SetI ASST 9 cut(s) 67, 122, 271, 447, 735, 964, 1277, 1449, 1535
SfaNI GCATC 3 cut(s) 996, 1501, 1551
SfcI CTRYAG 1 cut(s) 1350
SinI GGWCC 2 cut(s) 1057, 1375
SmiMI CAYNNNNRTG 1 cut(s) 1328
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
SnaBI TACGTA 1 cut(s) 733
SseBI AGGCCT 1 cut(s) 452
SsiI CCGC 5 cut(s) 41, 125, 173, 473, 759
SspI AATATT 3 cut(s) 647, 807, 1556
SspMI CTAG 5 cut(s) 504, 824, 854, 890, 1470
StuI AGGCCT 1 cut(s) 452
StyD4I CCNGG 2 cut(s) 309, 1399
StyI CCWWGG 1 cut(s) 1191
TaaI ACNGT 5 cut(s) 185, 577, 1153, 1184, 1281
TaiI ACGT 1 cut(s) 735
TaqI TCGA 3 cut(s) 327, 693, 1249
TaqII GACCGA 1 cut(s) 1185
TatI WGTACW 1 cut(s) 336
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 2 cut(s) 903, 1269
Tru1I TTAA 6 cut(s) 344, 528, 899, 1094, 1160, 1612
Tru9I TTAA 6 cut(s) 344, 528, 899, 1094, 1160, 1612
TscAI CASTG 4 cut(s) 580, 598, 1284, 1363
TseFI GTSAC 2 cut(s) 200, 1102
TseI GCWGC 4 cut(s) 65, 273, 790, 984
Tsp45I GTSAC 2 cut(s) 200, 1102
TspDTI ATGAA 5 cut(s) 132, 238, 1409, 1491, 1590
TspRI CASTG 4 cut(s) 580, 598, 1284, 1363
Van91I CCANNNNNTGG 2 cut(s) 43, 671
Vha464I CTTAAG 1 cut(s) 527
VneI GTGCAC 1 cut(s) 1528
VpaK11BI GGWCC 2 cut(s) 1057, 1375
XagI CCTNNNNNAGG 1 cut(s) 719
XapI RAATTY 1 cut(s) 766
XceI RCATGY 3 cut(s) 57, 201, 1339
XmnI GAANNNNTTC 2 cut(s) 522, 679
XspI CTAG 5 cut(s) 504, 824, 854, 890, 1470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.