Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0013124

Physical Location & Seq

Genomic Coordinates Forward (+)

65478900 .. 65481763

Gene Structure 2864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G039980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGGTCCTCCCAATGGTACTTCTCAAGCTCACAGACTGGGTGTGGTACCAGCTGTTAGCAAATTCATGTCAAAGAGCAGCAAGGAAAGTCAGAAACTATGGCTCTCCCAAGCCCCACCAATTACCTCAACCTCCTTCTTTCCCTAATATTACCAAGTGTGAGTTAAATGGTAGAAAGTCCCACACACTTGTTTGTGACATTTTTGGAGGCCTTTTGAGATCAAACTCTGTATTTCCTTACTTCATGTTGGTTGCTTTTGAAGGTGGAAGCATTATTAGAGCCTTTCTATTGTTGCTGTCATGCTCTTTTTTGTGGGTTTTGGACTATGAACTCCAATTTAGGGTCATGATTTTCATAACCTTTTGTGGGCTTAAGATTAAGCACATGGAGAGTGTTGGAAGGGCCGTCTTACCCAAGTTTTATCTTGAAAATCTTAATCTTCATGCCTATGAGGCTTTGGCTTCAACTGGGTCTAAGGTGGTTTTTACTAGTGTCCCTAGAGTCATGGTGGAAGGGTTCCTTCAGGAGTATTTGGATGTTGATGATGTTAAGGGGACTGAGTTGCTCACTTCTGGGCACTACTTCACCGGTTTGTTGTCTAAATCTGGTTTGCTTATGAAGCACAGAGCTCTAAAGGAATATTTTGGTGACAGAATACCAGATATTGGACTAGGAACTTCAAGCCTCCATGATGATCTCTTCATCTCTCTTTGCAAGGAAGCTTATGTAGTGAACAAGGAAGACAGCAAGAGCAATTCAAGTACTTCAGTGTTGCCAAGGCACAGATACCCCAAGCCCTTAATATTCCATGATGGAAGGCTAGCTTTCTTGCCTACTCCATTAGCAACTCTCTCCATGTTCTTGTGGATCCCCATTGGAATAGTCATAGCCATATTCAGAATCTCAGTGGGTATTTTCCTCCCCTTCAAAATTGCAATCTTCTTAGCCACTTGCACCGGTCTAAATCTATCTGTCAAAGGTTTAGACAGTACTTCAACAAAATCAAACCATGAAAATAGAGGAGTCCTCTATGTTTGTACCCACAGAACACTTCTTGACCCAGTTATCCTCAGCACAGCTCTTGCCAAGCCCTTGACAGCTGTCACATACAGCCTAAGCAAAATGTCTGAGATCATAGCCCCAATTAGGACAGTGAGGTTAACAAGGGACAGAAAAAAAGATGGAAAAACAATGAACAAGTTGCTTAGTGAAGGTGACTTGGTGGTGTGTCCTGAGGGTACAACATGTAGAGAGCCCTATTTGTTGAGGTTTAGTTCACTGTTTGCTGAATTGGCTGATGAGATTGTGCCTGTGGCTGTCAACACAAAGGTGAGTATGTTCTATGGGACTACAGCCAGTGGGCTCAAATGTTTGGATCCTATTTTCTTCTTGATGAACCCTAGACCTGTGTATTATGTTGAAATATTAGGCAAGTTACCTAAAGAGCTGACTTGTGCTGGTGGAAAATCTAGCTGTGAAGTTGCTAATTATATACAGAGGAAGTTGGGTGATGCTTTGGGGTTTGAGTGTACCACTCTTACAAGGAAGGACAAGTACTTGATGCTGGCTGGGAATGAAGGAATAGTCAGTGATAATAAGAGGAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006793 GO:0006796 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009555 GO:0009628 GO:0009987 GO:0010143 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050896 GO:0051704 GO:0055046 GO:0071704 GO:0080167 GO:0090447 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase HAD

Protein Analysis

536

Amino Acids

59.86

Weight (kDa)

9.19

Isoelectric Point (pI)

32.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_RAM2_N	PF23270	62 - 244	8.2e-65	Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
HAD	PF12710	64 - 224	1.3e-08	haloacid dehalogenase-like hydrolase
Acyltransferase	PF01553	337 - 439	3.1e-09	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06520
fragaria_vesca	FvH4_6g38270
malus_domestica	MD09G1151400.v1.1 MD17G1139100.v1.1
prunus_persica	Prupe.3G173300_v2.0.a1
pyrus_communis	pycom09g07110 pycom17g13220
rosa_chinensis	RchiOBHm_Chr2g0151571
rosa_laevigata	RLG00000020559
rosa_multiflora	Rmu_sc0000940.1_g000032 Rmu_sc0000940.1_g000033
rosa_roxburghii	Rroxscaffold_2G00096350
rosa_rugosa	Rorug02G0426900
rosa_samantha	Rh2AG487700 Rh2BG500200 Rh2CG474200 Rh2DG511400
rosa_wichuraiana	Rw2G039980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	45
AccB7I	CCANNNNNTGG	1 cut(s)	665
AclWI	GGATC	4 cut(s)	862, 875, 1370, 1383
AcsI	RAATTY	1 cut(s)	61
AcuI	CTGAAG	2 cut(s)	506, 750
AfaI	GTAC	8 cut(s)	18, 47, 763, 991, 1039, 1240, 1531, 1556
AfiI	CCNNNNNNNGG	5 cut(s)	13, 340, 366, 665, 1146
AflII	CTTAAG	1 cut(s)	371
AflIII	ACRYGT	1 cut(s)	1244
AgeI	ACCGGT	2 cut(s)	587, 956
AgsI	TTSAA	8 cut(s)	260, 428, 465, 681, 759, 928, 996, 1421
AhlI	ACTAGT	1 cut(s)	488
AleI	CACNNNNGTG	1 cut(s)	1328
AluBI	AGCT	9 cut(s)	28, 52, 629, 722, 824, 1079, 1100, 1447, 1473
AluI	AGCT	9 cut(s)	28, 52, 629, 722, 824, 1079, 1100, 1447, 1473
Alw21I	GWGCWC	1 cut(s)	631
AlwI	GGATC	4 cut(s)	862, 875, 1370, 1383
AoxI	GGCC	2 cut(s)	208, 402
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	61
AsiGI	ACCGGT	2 cut(s)	587, 956
Asp718I	GGTACC	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	4, 402
AsuHPI	GGTGA	5 cut(s)	577, 659, 1226, 1342, 1520
AsuNHI	GCTAGC	1 cut(s)	820
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	1233
BaeGI	GKGCMC	1 cut(s)	579
BamHI	GGATCC	2 cut(s)	867, 1375
BanI	GGYRCC	1 cut(s)	45
BanII	GRGCYC	3 cut(s)	631, 1257, 1365
BarI	GAAGNNNNNNTAC	2 cut(s)	1538, 1570
BbsI	GAAGAC	1 cut(s)	747
Bbv12I	GWGCWC	1 cut(s)	631
BbvCI	CCTCAGC	1 cut(s)	1070
BbvI	GCAGC	1 cut(s)	89
BccI	CCATC	2 cut(s)	806, 1175
BceAI	ACGGC	1 cut(s)	389
BcuI	ACTAGT	1 cut(s)	488
BfaI	CTAG	6 cut(s)	489, 498, 671, 821, 1401, 1470
BfmI	CTRYAG	1 cut(s)	1350
BfrI	CTTAAG	1 cut(s)	371
BglI	GCCNNNNNGGC	1 cut(s)	452
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
BmcAI	AGTACT	3 cut(s)	763, 991, 1556
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 402
BmiI	GGNNCC	4 cut(s)	47, 518, 869, 1377
BmrI	ACTGGG	3 cut(s)	46, 477, 1055
BmsI	GCATC	2 cut(s)	1501, 1551
BmtI	GCTAGC	1 cut(s)	824
BmuI	ACTGGG	3 cut(s)	46, 477, 1055
BoxI	GACNNNNGTC	1 cut(s)	1100
BpiI	GAAGAC	1 cut(s)	747
BplI	GAGNNNNNCTC	2 cut(s)	1011, 1043
Bpu10I	CCTNAGC	2 cut(s)	1070, 1115
BpuEI	CTTGAG	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	776
BsaWI	WCCGGW	2 cut(s)	587, 956
Bsc4I	CCNNNNNNNGG	5 cut(s)	13, 340, 366, 665, 1146
Bse118I	RCCGGY	2 cut(s)	587, 956
Bse1I	ACTGG	4 cut(s)	41, 472, 1061, 1356
Bse21I	CCTNAGG	1 cut(s)	1233
BseDI	CCNNGG	1 cut(s)	776
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	5 cut(s)	13, 340, 366, 665, 1146
BseMII	CTCAG	5 cut(s)	549, 918, 1084, 1119, 1224
BseNI	ACTGG	4 cut(s)	41, 472, 1061, 1356
BseRI	GAGGAG	1 cut(s)	1035
BseSI	GKGCMC	1 cut(s)	579
BseXI	GCAGC	1 cut(s)	89
BseYI	CCCAGC	1 cut(s)	1568
BshFI	GGCC	2 cut(s)	210, 404
BshNI	GGYRCC	1 cut(s)	45
BshTI	ACCGGT	2 cut(s)	587, 956
BsiHKAI	GWGCWC	1 cut(s)	631
BsiSI	CCGG	2 cut(s)	588, 957
BslFI	GGGAC	5 cut(s)	163, 479, 568, 1181, 1360
BslI	CCNNNNNNNGG	5 cut(s)	13, 340, 366, 665, 1146
BsmFI	GGGAC	5 cut(s)	163, 479, 568, 1181, 1360
BsnI	GGCC	2 cut(s)	210, 404
Bsp1286I	GDGCHC	4 cut(s)	579, 631, 1257, 1365
Bsp143I	GATC	5 cut(s)	218, 694, 867, 1131, 1375
BspANI	GGCC	2 cut(s)	210, 404
BspCNI	CTCAG	5 cut(s)	550, 917, 1083, 1120, 1225
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	4 cut(s)	47, 518, 869, 1377
BspOI	GCTAGC	1 cut(s)	824
BspPI	GGATC	4 cut(s)	862, 875, 1370, 1383
BspT107I	GGYRCC	1 cut(s)	45
BspTI	CTTAAG	1 cut(s)	371
BsrFI	RCCGGY	2 cut(s)	587, 956
BsrI	ACTGG	4 cut(s)	41, 472, 1061, 1356
BssAI	RCCGGY	2 cut(s)	587, 956
BssECI	CCNNGG	1 cut(s)	776
BssMI	GATC	5 cut(s)	218, 694, 867, 1131, 1375
BssT1I	CCWWGG	1 cut(s)	776
Bst4CI	ACNGT	3 cut(s)	989, 1153, 1281
Bst6I	CTCTTC	1 cut(s)	704
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	2 cut(s)	822, 1566
BstDEI	CTNAG	9 cut(s)	474, 558, 904, 943, 1070, 1115, 1128, 1205, 1233
BstF5I	GGATG	1 cut(s)	541
BstKTI	GATC	5 cut(s)	221, 697, 870, 1134, 1378
BstMBI	GATC	5 cut(s)	218, 694, 867, 1131, 1375
BstMWI	GCNNNNNNNGC	3 cut(s)	452, 619, 1292
BstNSI	RCATGY	1 cut(s)	1248
BstPAI	GACNNNNGTC	1 cut(s)	1100
BstSFI	CTRYAG	1 cut(s)	1350
BstSLI	GKGCMC	1 cut(s)	579
BstV1I	GCAGC	1 cut(s)	89
BstV2I	GAAGAC	1 cut(s)	747
BstX2I	RGATCY	2 cut(s)	867, 1375
BstYI	RGATCY	2 cut(s)	867, 1375
Bsu36I	CCTNAGG	1 cut(s)	1233
BsuRI	GGCC	2 cut(s)	210, 404
BtsCI	GGATG	1 cut(s)	541
BtsIMutI	CAGTG	6 cut(s)	774, 912, 1158, 1277, 1363, 1594
Cac8I	GCNNGC	2 cut(s)	822, 1566
CciI	TCATGA	1 cut(s)	345
Cfr10I	RCCGGY	2 cut(s)	587, 956
Cfr13I	GGNCC	2 cut(s)	4, 402
Csp6I	GTAC	8 cut(s)	17, 46, 762, 990, 1038, 1239, 1530, 1555
CspAI	ACCGGT	2 cut(s)	587, 956
CviQI	GTAC	8 cut(s)	17, 46, 762, 990, 1038, 1239, 1530, 1555
DdeI	CTNAG	9 cut(s)	474, 558, 904, 943, 1070, 1115, 1128, 1205, 1233
DpnI	GATC	5 cut(s)	220, 696, 869, 1133, 1377
DpnII	GATC	5 cut(s)	218, 694, 867, 1131, 1375
Eam1104I	CTCTTC	1 cut(s)	704
EarI	CTCTTC	1 cut(s)	704
Ecl136II	GAGCTC	1 cut(s)	629
Eco130I	CCWWGG	1 cut(s)	776
Eco147I	AGGCCT	1 cut(s)	210
Eco24I	GRGCYC	3 cut(s)	631, 1257, 1365
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	629
Eco57I	CTGAAG	2 cut(s)	506, 750
Eco81I	CCTNAGG	1 cut(s)	1233
EcoICRI	GAGCTC	1 cut(s)	629
EcoT14I	CCWWGG	1 cut(s)	776
EcoT38I	GRGCYC	3 cut(s)	631, 1257, 1365
ErhI	CCWWGG	1 cut(s)	776
FalI	AAGNNNNNCTT	4 cut(s)	504, 536, 808, 840
FaqI	GGGAC	5 cut(s)	163, 479, 568, 1181, 1360
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	1 cut(s)	548
FriOI	GRGCYC	3 cut(s)	631, 1257, 1365
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	6 cut(s)	489, 498, 671, 821, 1401, 1470
GluI	GCNGC	1 cut(s)	78
GsaI	CCCAGC	1 cut(s)	1572
HaeIII	GGCC	2 cut(s)	210, 404
HapII	CCGG	2 cut(s)	588, 957
HincII	GTYRAC	2 cut(s)	1161, 1321
HindII	GTYRAC	2 cut(s)	1161, 1321
HindIII	AAGCTT	1 cut(s)	720
HinfI	GANTC	3 cut(s)	501, 900, 1023
HpaI	GTTAAC	1 cut(s)	1161
HpaII	CCGG	2 cut(s)	588, 957
HphI	GGTGA	5 cut(s)	577, 659, 1226, 1342, 1520
Hpy166II	GTNNAC	5 cut(s)	733, 1161, 1277, 1321, 1530
Hpy188I	TCNGA	3 cut(s)	92, 899, 1129
Hpy188III	TCNNGA	6 cut(s)	346, 425, 524, 1055, 1232, 1390
Hpy8I	GTNNAC	5 cut(s)	733, 1161, 1277, 1321, 1530
HpyCH4III	ACNGT	3 cut(s)	989, 1153, 1281
HpyCH4V	TGCA	3 cut(s)	714, 935, 954
HpyF10VI	GCNNNNNNNGC	3 cut(s)	452, 619, 1292
HpyF3I	CTNAG	9 cut(s)	474, 558, 904, 943, 1070, 1115, 1128, 1205, 1233
KpnI	GGTACC	1 cut(s)	49
KspAI	GTTAAC	1 cut(s)	1161
Kzo9I	GATC	5 cut(s)	218, 694, 867, 1131, 1375
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	2 cut(s)	1501, 1551
MaeI	CTAG	6 cut(s)	489, 498, 671, 821, 1401, 1470
MaeIII	GTNAC	5 cut(s)	194, 647, 1102, 1214, 1434
MalI	GATC	5 cut(s)	220, 696, 869, 1133, 1377
MboI	GATC	5 cut(s)	218, 694, 867, 1131, 1375
MboII	GAAGA	5 cut(s)	431, 691, 752, 931, 1378
MflI	RGATCY	2 cut(s)	867, 1375
MhlI	GDGCHC	4 cut(s)	579, 631, 1257, 1365
MluCI	AATT	9 cut(s)	61, 119, 335, 754, 930, 1143, 1289, 1486, 1606
MlyI	GAGTC	2 cut(s)	510, 1032
MmeI	TCCRAC	1 cut(s)	376
MseI	TTAA	7 cut(s)	164, 372, 378, 435, 549, 800, 1160
MslI	CAYNNNNRTG	2 cut(s)	447, 1328
MspA1I	CMGCKG	2 cut(s)	52, 1100
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	2 cut(s)	588, 957
MwoI	GCNNNNNNNGC	3 cut(s)	452, 619, 1292
NdeII	GATC	5 cut(s)	218, 694, 867, 1131, 1375
NheI	GCTAGC	1 cut(s)	820
NlaIV	GGNNCC	4 cut(s)	47, 518, 869, 1377
NmuCI	GTSAC	4 cut(s)	194, 647, 1102, 1214
NspI	RCATGY	1 cut(s)	1248
OliI	CACNNNNGTG	1 cut(s)	1328
PagI	TCATGA	1 cut(s)	345
PceI	AGGCCT	1 cut(s)	210
PciI	ACATGT	1 cut(s)	1244
PfeI	GAWTC	1 cut(s)	900
PflMI	CCANNNNNTGG	1 cut(s)	665
PinAI	ACCGGT	2 cut(s)	587, 956
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	2 cut(s)	509, 1031
PpsI	GAGTC	2 cut(s)	509, 1031
PscI	ACATGT	1 cut(s)	1244
PshAI	GACNNNNGTC	1 cut(s)	1100
Psp124BI	GAGCTC	1 cut(s)	631
PspFI	CCCAGC	1 cut(s)	1568
PspN4I	GGNNCC	4 cut(s)	47, 518, 869, 1377
PspPI	GGNCC	2 cut(s)	4, 402
PsuI	RGATCY	2 cut(s)	867, 1375
PvuII	CAGCTG	2 cut(s)	52, 1100
RsaI	GTAC	8 cut(s)	18, 47, 763, 991, 1039, 1240, 1531, 1556
RsaNI	GTAC	8 cut(s)	17, 46, 762, 990, 1038, 1239, 1530, 1555
RseI	CAYNNNNRTG	2 cut(s)	447, 1328
SacI	GAGCTC	1 cut(s)	631
SaqAI	TTAA	7 cut(s)	164, 372, 378, 435, 549, 800, 1160
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	5 cut(s)	218, 694, 867, 1131, 1375
Sau96I	GGNCC	2 cut(s)	4, 402
ScaI	AGTACT	3 cut(s)	763, 991, 1556
SchI	GAGTC	2 cut(s)	510, 1032
SduI	GDGCHC	4 cut(s)	579, 631, 1257, 1365
SfaNI	GCATC	2 cut(s)	1501, 1551
SfcI	CTRYAG	1 cut(s)	1350
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	447, 1328
SmlI	CTYRAG	2 cut(s)	23, 371
SmoI	CTYRAG	2 cut(s)	23, 371
SpeI	ACTAGT	1 cut(s)	488
Sse9I	AATT	9 cut(s)	61, 119, 335, 754, 930, 1143, 1289, 1486, 1606
SseBI	AGGCCT	1 cut(s)	210
SspI	AATATT	4 cut(s)	148, 641, 804, 1425
SspMI	CTAG	6 cut(s)	489, 498, 671, 821, 1401, 1470
SstI	GAGCTC	1 cut(s)	631
StuI	AGGCCT	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	776
TaaI	ACNGT	3 cut(s)	989, 1153, 1281
TasI	AATT	9 cut(s)	61, 119, 335, 754, 930, 1143, 1289, 1486, 1606
TatI	WGTACW	3 cut(s)	761, 989, 1554
TfiI	GAWTC	1 cut(s)	900
Tru1I	TTAA	7 cut(s)	164, 372, 378, 435, 549, 800, 1160
Tru9I	TTAA	7 cut(s)	164, 372, 378, 435, 549, 800, 1160
TscAI	CASTG	6 cut(s)	774, 912, 1158, 1284, 1363, 1594
TseFI	GTSAC	4 cut(s)	194, 647, 1102, 1214
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	4 cut(s)	194, 647, 1102, 1214
TspRI	CASTG	6 cut(s)	774, 912, 1158, 1284, 1363, 1594
Van91I	CCANNNNNTGG	1 cut(s)	665
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	61
XceI	RCATGY	1 cut(s)	1248
XspI	CTAG	6 cut(s)	489, 498, 671, 821, 1401, 1470
ZrmI	AGTACT	3 cut(s)	763, 991, 1556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.