Prupe.3G173300_v2.0.a1

glycerol-3-phosphate acyltransferase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
19096989 .. 19100007
3019 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G173300.1

Sequence Viewer

Length: 1638 bp
ATGGTCCTCCCAGTGGTACTTATCAAGCTCATAGATTTAGTCTGGTACCAGCTGCTAGCAAATTCATGTCACAGAGCTGCAAGGAAAGTGAGAAACTATGGCTTCCTTTTTGGCAACTCTTCTCCTCCTAACAAGCCATCCCAACAACAACCACCCTTTTCATTTCCCAGTGTAACCAAGTGTGTTTTGGAGGGTAGAGATTGTGCCACAATTGCATGTGACATTTTTGGAGCCCTTTTGAAATCCCAATCTGTCTTCCCTTACTTCATGTTGGTTGCCTTTGAAGGTGGCAGCGTTATCAGAGCCTTTCTTTTGCTTCTGTCATGCCCCATTTTGCTGGTTCTGGACTATGAGCTCAAATTAAGGGTCATGATTTTCATCACCTTTTGTGGGCTTAGGAGAAAGGACATGGAGAGTGTTGGCAGGGCTGTTTTGCCCAAGTTTTATCTTGACAACCTCAACCTTCAGGCCTATGAGGTTCTGGCTTCAACAGGGTCCAAATTTGTGTTTACAAGTGTCCCTAGAGTCATGGTTGAAGGATTTCTCAAGGAGTATTTGGAGGTTGATGATGTTATAGGCACTGAGCTGCAAACTGTTGGGCACTATTTCACTGGCTTCTTATCCAAGTCTGGTTTTCTTGTGAAGCACAGAGCTCTAAAAGAACACTTTGGAGACAAAAAACCAGATGTTGGGCTTGGAACTTCAAGCCTCCATGATCATCTCTTTATCTCCCTTTGCAAGGAAGCCTATGTAGTGAACAAGGAAGACAGCAAGAGTGGTTCAAATTCAGTGATGCCAAGGCAAAAATACCCGAAGCCAGTGATATTTCATGATGGAAGGCTAGCATTCTTGCCTACACCATCTGCAACTCTTGCCATGTTCATGTGGCTCCCTCTTGGAATAATCCTAGCCATATTCAGAATCTCTGTAGGCATCTTCCTCCCCTACAAAATTGCCCTCTTTTTGGTCACTTTGACAGGTCTCAACCTATCTGCAAAAGGGTGTGACAATTCAACTTCTGCAAAACCAGACCAAGAAAAAAGAGGGGTTCTCTATGTTTGCACCCACAGGACTCTTTTGGATCCAGTTTTCCTCAGCACATCTCTGTGCAAGCCTTTGACTGCAGTCACATACAGCCTGAGCAAAATGTCTGAGATCATAGCCCCAATTAAGACAGTGAGATTAACAAGAGACCGAAAAAAAGATGGGGAAACCATGCAGAAGCTGCTCAGTGAGGGAGATTTGGTGGTGTGCCCTGAAGGAACTACTTGCAGGGAGCCTTATTTGTTGAGGTTCAGCTCACTGTTTGCAGAATTGGCTGATGAGATTGTTCCTGTGGCCATCAACACAAACGTGACCATGTTTTATGGGACAACAGCTAGTGGCCTCAAATGCCTGGACCCAATTTTCTTCTTGATGAACCCTAGGCCTGGATATTATGTTGAGGTTCTTGGGAAGCTCCCAAAAGACCTAACTTGCGCAGGGGGTAAGTCCAGCAATGAAGTGGCAAACTATATACAGAGGAAGCTGGCTGATGCTTTGGGATTTGAGTGCACCACTCTCACAAGGAAGGACAAGTACTTGATGCTAGCTGGGAATGAAGGAATTGTTCAAGATAATAAGAGAAAGAAGCCTTAG

Protein Analysis

546

Amino Acids

60.65

Weight (kDa)

9.1

Isoelectric Point (pI)

34.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013124)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1480
Acc65I GGTACC 1 cut(s) 45
AccB1I GGYRCC 1 cut(s) 45
AccB7I CCANNNNNTGG 1 cut(s) 689
AclWI GGATC 2 cut(s) 1076, 1089
AcoI YGGCCR 1 cut(s) 1338
AcsI RAATTY 3 cut(s) 61, 500, 784
AcuI CTGAAG 2 cut(s) 449, 1278
AfaI GTAC 3 cut(s) 18, 47, 1580
AfiI CCNNNNNNNGG 6 cut(s) 13, 390, 689, 739, 964, 1430
AgsI TTSAA 8 cut(s) 241, 284, 489, 536, 705, 783, 1014, 1613
AjnI CCWGG 2 cut(s) 1395, 1429
AleI CACNNNNGTG 1 cut(s) 1352
Alw21I GWGCWC 3 cut(s) 357, 655, 1556
Alw26I GTCTC 3 cut(s) 666, 986, 1185
Alw44I GTGCAC 1 cut(s) 1552
AlwI GGATC 2 cut(s) 1076, 1089
AlwNI CAGNNNCTG 1 cut(s) 1225
AoxI GGCC 4 cut(s) 468, 1338, 1384, 1427
ApaLI GTGCAC 1 cut(s) 1552
ApeKI GCWGC 5 cut(s) 52, 77, 291, 586, 1225
ApoI RAATTY 3 cut(s) 61, 500, 784
ArsI GACNNNNNNTTYG 2 cut(s) 351, 383
Asp700I GAANNNNTTC 1 cut(s) 540
Asp718I GGTACC 1 cut(s) 45
AspA2I CCTAGG 1 cut(s) 1424
AspLEI GCGC 1 cut(s) 1481
AspS9I GGNCC 3 cut(s) 4, 495, 1399
AsuHPI GGTGA 1 cut(s) 373
AsuNHI GCTAGC 3 cut(s) 55, 841, 1588
AvaII GGWCC 3 cut(s) 4, 495, 1399
AvrII CCTAGG 1 cut(s) 1424
BaeGI GKGCMC 3 cut(s) 603, 1256, 1556
BalI TGGCCA 1 cut(s) 1340
BamHI GGATCC 1 cut(s) 1081
BanI GGYRCC 1 cut(s) 45
BanII GRGCYC 3 cut(s) 235, 357, 655
BarI GAAGNNNNNNTAC 2 cut(s) 1562, 1594
BbsI GAAGAC 2 cut(s) 247, 771
Bbv12I GWGCWC 3 cut(s) 357, 655, 1556
BbvCI CCTCAGC 1 cut(s) 1094
BbvI GCAGC 5 cut(s) 39, 64, 303, 573, 1212
BccI CCATC 5 cut(s) 145, 827, 868, 1199, 1349
BciT130I CCWGG 2 cut(s) 1397, 1431
BclI TGATCA 1 cut(s) 715
BcoDI GTCTC 3 cut(s) 666, 986, 1185
BfaI CTAG 7 cut(s) 56, 522, 842, 908, 1380, 1425, 1589
BfmI CTRYAG 2 cut(s) 927, 1122
BisI GCNGC 5 cut(s) 53, 78, 292, 587, 1226
BlnI CCTAGG 1 cut(s) 1424
BlsI GCNGC 5 cut(s) 54, 79, 293, 588, 1227
BmcAI AGTACT 1 cut(s) 1580
Bme1390I CCNGG 2 cut(s) 1397, 1431
Bme18I GGWCC 3 cut(s) 4, 495, 1399
BmgT120I GGNCC 3 cut(s) 4, 495, 1399
BmiI GGNNCC 7 cut(s) 47, 232, 496, 890, 1083, 1278, 1401
BmrFI CCNGG 2 cut(s) 1397, 1431
BmrI ACTGGG 2 cut(s) 5, 162
BmsI GCATC 4 cut(s) 783, 942, 1525, 1575
BmtI GCTAGC 3 cut(s) 59, 845, 1592
BmuI ACTGGG 2 cut(s) 5, 162
BoxI GACNNNNGTC 1 cut(s) 1124
BpiI GAAGAC 2 cut(s) 247, 771
BplI GAGNNNNNCTC 2 cut(s) 1035, 1067
Bpu10I CCTNAGC 3 cut(s) 395, 1094, 1139
BpuEI CTTGAG 1 cut(s) 530
BsaBI GATNNNNATC 1 cut(s) 377
BsaI GGTCTC 2 cut(s) 986, 1185
BsaJI CCNNGG 2 cut(s) 797, 1424
BsaXI ACNNNNNCTCC 2 cut(s) 1230, 1260
Bsc4I CCNNNNNNNGG 6 cut(s) 13, 390, 689, 739, 964, 1430
Bse1I ACTGG 5 cut(s) 11, 168, 616, 818, 1085
Bse3DI GCAATG 1 cut(s) 1504
Bse8I GATNNNNATC 1 cut(s) 377
BseBI CCWGG 2 cut(s) 1397, 1431
BseDI CCNNGG 2 cut(s) 797, 1424
BseGI GGATG 1 cut(s) 137
BseJI GATNNNNATC 1 cut(s) 377
BseLI CCNNNNNNNGG 6 cut(s) 13, 390, 689, 739, 964, 1430
BseMI GCAATG 1 cut(s) 1504
BseMII CTCAG 5 cut(s) 573, 1108, 1130, 1143, 1243
BseNI ACTGG 5 cut(s) 11, 168, 616, 818, 1085
BseRI GAGGAG 1 cut(s) 114
BseSI GKGCMC 3 cut(s) 603, 1256, 1556
BseXI GCAGC 5 cut(s) 39, 64, 303, 573, 1212
BseYI CCCAGC 1 cut(s) 1592
BshFI GGCC 4 cut(s) 470, 1340, 1386, 1429
BshNI GGYRCC 1 cut(s) 45
BsiHKAI GWGCWC 3 cut(s) 357, 655, 1556
BslFI GGGAC 2 cut(s) 503, 1384
BslI CCNNNNNNNGG 6 cut(s) 13, 390, 689, 739, 964, 1430
BsmAI GTCTC 3 cut(s) 666, 986, 1185
BsmFI GGGAC 2 cut(s) 503, 1384
BsmI GAATGC 1 cut(s) 845
BsnI GGCC 4 cut(s) 470, 1340, 1386, 1429
Bso31I GGTCTC 2 cut(s) 986, 1185
Bsp1286I GDGCHC 6 cut(s) 235, 357, 603, 655, 1256, 1556
Bsp143I GATC 3 cut(s) 715, 1081, 1155
BspANI GGCC 4 cut(s) 470, 1340, 1386, 1429
BspCNI CTCAG 5 cut(s) 574, 1107, 1131, 1144, 1242
BspHI TCATGA 2 cut(s) 369, 829
BspLI GGNNCC 7 cut(s) 47, 232, 496, 890, 1083, 1278, 1401
BspMAI CTGCAG 1 cut(s) 1126
BspOI GCTAGC 3 cut(s) 59, 845, 1592
BspPI GGATC 2 cut(s) 1076, 1089
BspT107I GGYRCC 1 cut(s) 45
BspTNI GGTCTC 2 cut(s) 986, 1185
BsrDI GCAATG 1 cut(s) 1504
BsrI ACTGG 5 cut(s) 11, 168, 616, 818, 1085
BssECI CCNNGG 2 cut(s) 797, 1424
BssMI GATC 3 cut(s) 715, 1081, 1155
BssT1I CCWWGG 2 cut(s) 797, 1424
Bst2UI CCWGG 2 cut(s) 1397, 1431
Bst4CI ACNGT 3 cut(s) 595, 1177, 1305
Bst6I CTCTTC 1 cut(s) 124
BstAPI GCANNNNNTGC 2 cut(s) 872, 1225
BstC8I GCNNGC 5 cut(s) 57, 843, 1112, 1530, 1590
BstDEI CTNAG 7 cut(s) 395, 582, 1094, 1139, 1152, 1229, 1635
BstENI CCTNNNNNAGG 1 cut(s) 737
BstF5I GGATG 1 cut(s) 137
BstHHI GCGC 1 cut(s) 1481
BstKTI GATC 3 cut(s) 718, 1084, 1158
BstMAI GTCTC 3 cut(s) 666, 986, 1185
BstMBI GATC 3 cut(s) 715, 1081, 1155
BstMWI GCNNNNNNNGC 5 cut(s) 212, 872, 1225, 1316, 1392
BstNI CCWGG 2 cut(s) 1397, 1431
BstNSI RCATGY 1 cut(s) 219
BstPAI GACNNNNGTC 1 cut(s) 1124
BstSCI CCNGG 2 cut(s) 1395, 1429
BstSFI CTRYAG 2 cut(s) 927, 1122
BstSLI GKGCMC 3 cut(s) 603, 1256, 1556
BstV1I GCAGC 5 cut(s) 39, 64, 303, 573, 1212
BstV2I GAAGAC 2 cut(s) 247, 771
BstX2I RGATCY 1 cut(s) 1081
BstXI CCANNNNNNTGG 1 cut(s) 337
BstYI RGATCY 1 cut(s) 1081
BsuRI GGCC 4 cut(s) 470, 1340, 1386, 1429
BtsCI GGATG 1 cut(s) 137
BtsIMutI CAGTG 9 cut(s) 18, 175, 579, 609, 795, 825, 1182, 1237, 1301
Cac8I GCNNGC 5 cut(s) 57, 843, 1112, 1530, 1590
CaiI CAGNNNCTG 1 cut(s) 1225
CciI TCATGA 2 cut(s) 369, 829
CfoI GCGC 1 cut(s) 1481
Cfr13I GGNCC 3 cut(s) 4, 495, 1399
Csp6I GTAC 3 cut(s) 17, 46, 1579
CviQI GTAC 3 cut(s) 17, 46, 1579
DdeI CTNAG 7 cut(s) 395, 582, 1094, 1139, 1152, 1229, 1635
DpnI GATC 3 cut(s) 717, 1083, 1157
DpnII GATC 3 cut(s) 715, 1081, 1155
EaeI YGGCCR 1 cut(s) 1338
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
Ecl136II GAGCTC 2 cut(s) 355, 653
Eco130I CCWWGG 2 cut(s) 797, 1424
Eco147I AGGCCT 2 cut(s) 470, 1429
Eco24I GRGCYC 3 cut(s) 235, 357, 655
Eco31I GGTCTC 2 cut(s) 986, 1185
Eco47I GGWCC 3 cut(s) 4, 495, 1399
Eco53kI GAGCTC 2 cut(s) 355, 653
Eco57I CTGAAG 2 cut(s) 449, 1278
EcoICRI GAGCTC 2 cut(s) 355, 653
EcoNI CCTNNNNNAGG 1 cut(s) 737
EcoRII CCWGG 2 cut(s) 1395, 1429
EcoT14I CCWWGG 2 cut(s) 797, 1424
EcoT38I GRGCYC 3 cut(s) 235, 357, 655
ErhI CCWWGG 2 cut(s) 797, 1424
FaqI GGGAC 2 cut(s) 503, 1384
FbaI TGATCA 1 cut(s) 715
Fnu4HI GCNGC 5 cut(s) 53, 78, 292, 587, 1226
FokI GGATG 1 cut(s) 124
FriOI GRGCYC 3 cut(s) 235, 357, 655
Fsp4HI GCNGC 5 cut(s) 53, 78, 292, 587, 1226
FspBI CTAG 7 cut(s) 56, 522, 842, 908, 1380, 1425, 1589
FspI TGCGCA 1 cut(s) 1480
GlaI GCGC 1 cut(s) 1480
GluI GCNGC 5 cut(s) 53, 78, 292, 587, 1226
GsaI CCCAGC 1 cut(s) 1596
HaeIII GGCC 4 cut(s) 470, 1340, 1386, 1429
HhaI GCGC 1 cut(s) 1481
Hin6I GCGC 1 cut(s) 1479
HinP1I GCGC 1 cut(s) 1479
HinfI GANTC 3 cut(s) 525, 921, 1072
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 3 cut(s) 510, 757, 1554
Hpy188I TCNGA 3 cut(s) 302, 920, 1153
Hpy188III TCNNGA 6 cut(s) 344, 370, 449, 830, 1414, 1613
Hpy8I GTNNAC 3 cut(s) 510, 757, 1554
HpyAV CCTTC 7 cut(s) 278, 473, 530, 831, 1253, 1564, 1595
HpyCH4III ACNGT 3 cut(s) 595, 1177, 1305
HpyCH4IV ACGT 1 cut(s) 1353
HpyF10VI GCNNNNNNNGC 5 cut(s) 212, 872, 1225, 1316, 1392
HpyF3I CTNAG 7 cut(s) 395, 582, 1094, 1139, 1152, 1229, 1635
HpySE526I ACGT 1 cut(s) 1353
HspAI GCGC 1 cut(s) 1479
KpnI GGTACC 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 715
Kzo9I GATC 3 cut(s) 715, 1081, 1155
LmnI GCTCC 4 cut(s) 230, 894, 1276, 1464
Lsp1109I GCAGC 5 cut(s) 39, 64, 303, 573, 1212
LweI GCATC 4 cut(s) 783, 942, 1525, 1575
MaeI CTAG 7 cut(s) 56, 522, 842, 908, 1380, 1425, 1589
MaeII ACGT 1 cut(s) 1353
MaeIII GTNAC 7 cut(s) 68, 172, 218, 967, 1004, 1126, 1354
MalI GATC 3 cut(s) 717, 1083, 1157
MboI GATC 3 cut(s) 715, 1081, 1155
MboII GAAGA 5 cut(s) 111, 247, 776, 928, 1402
MfeI CAATTG 1 cut(s) 210
MflI RGATCY 1 cut(s) 1081
MhlI GDGCHC 6 cut(s) 235, 357, 603, 655, 1256, 1556
MlsI TGGCCA 1 cut(s) 1340
MluNI TGGCCA 1 cut(s) 1340
MlyI GAGTC 2 cut(s) 534, 1066
Mox20I TGGCCA 1 cut(s) 1340
MroXI GAANNNNTTC 1 cut(s) 540
MscI TGGCCA 1 cut(s) 1340
MseI TTAA 3 cut(s) 362, 1170, 1184
MslI CAYNNNNRTG 3 cut(s) 881, 1105, 1352
Msp20I TGGCCA 1 cut(s) 1340
MspA1I CMGCKG 1 cut(s) 52
MspR9I CCNGG 2 cut(s) 1397, 1431
MunI CAATTG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 845
MvaI CCWGG 2 cut(s) 1397, 1431
MwoI GCNNNNNNNGC 5 cut(s) 212, 872, 1225, 1316, 1392
NdeII GATC 3 cut(s) 715, 1081, 1155
NheI GCTAGC 3 cut(s) 55, 841, 1588
NlaIV GGNNCC 7 cut(s) 47, 232, 496, 890, 1083, 1278, 1401
NmuCI GTSAC 6 cut(s) 68, 218, 967, 1004, 1126, 1354
NsbI TGCGCA 1 cut(s) 1480
NspI RCATGY 1 cut(s) 219
OliI CACNNNNGTG 1 cut(s) 1352
PagI TCATGA 2 cut(s) 369, 829
PceI AGGCCT 2 cut(s) 470, 1429
PctI GAATGC 1 cut(s) 845
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 1 cut(s) 921
PflMI CCANNNNNTGG 1 cut(s) 689
PkrI GCNGC 5 cut(s) 54, 79, 293, 588, 1227
PleI GAGTC 2 cut(s) 533, 1066
PpsI GAGTC 2 cut(s) 533, 1066
PshAI GACNNNNGTC 1 cut(s) 1124
Psp124BI GAGCTC 2 cut(s) 357, 655
Psp6I CCWGG 2 cut(s) 1395, 1429
PspFI CCCAGC 1 cut(s) 1592
PspGI CCWGG 2 cut(s) 1395, 1429
PspN4I GGNNCC 7 cut(s) 47, 232, 496, 890, 1083, 1278, 1401
PspPI GGNCC 3 cut(s) 4, 495, 1399
PstI CTGCAG 1 cut(s) 1126
PstNI CAGNNNCTG 1 cut(s) 1225
PsuI RGATCY 1 cut(s) 1081
PvuII CAGCTG 1 cut(s) 52
RsaI GTAC 3 cut(s) 18, 47, 1580
RsaNI GTAC 3 cut(s) 17, 46, 1579
RseI CAYNNNNRTG 3 cut(s) 881, 1105, 1352
SacI GAGCTC 2 cut(s) 357, 655
SaqAI TTAA 3 cut(s) 362, 1170, 1184
SatI GCNGC 5 cut(s) 53, 78, 292, 587, 1226
Sau3AI GATC 3 cut(s) 715, 1081, 1155
Sau96I GGNCC 3 cut(s) 4, 495, 1399
ScaI AGTACT 1 cut(s) 1580
SchI GAGTC 2 cut(s) 534, 1066
ScrFI CCNGG 2 cut(s) 1397, 1431
SduI GDGCHC 6 cut(s) 235, 357, 603, 655, 1256, 1556
SfaNI GCATC 4 cut(s) 783, 942, 1525, 1575
SfcI CTRYAG 2 cut(s) 927, 1122
SinI GGWCC 3 cut(s) 4, 495, 1399
SmiMI CAYNNNNRTG 3 cut(s) 881, 1105, 1352
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
SseBI AGGCCT 2 cut(s) 470, 1429
SspMI CTAG 7 cut(s) 56, 522, 842, 908, 1380, 1425, 1589
SstI GAGCTC 2 cut(s) 357, 655
StuI AGGCCT 2 cut(s) 470, 1429
StyD4I CCNGG 2 cut(s) 1395, 1429
StyI CCWWGG 2 cut(s) 797, 1424
TaaI ACNGT 3 cut(s) 595, 1177, 1305
TaiI ACGT 1 cut(s) 1356
TaqII GACCGA 1 cut(s) 1209
TatI WGTACW 1 cut(s) 1578
TfiI GAWTC 1 cut(s) 921
Tru1I TTAA 3 cut(s) 362, 1170, 1184
Tru9I TTAA 3 cut(s) 362, 1170, 1184
TscAI CASTG 9 cut(s) 18, 175, 586, 616, 795, 825, 1182, 1237, 1308
TseFI GTSAC 6 cut(s) 68, 218, 967, 1004, 1126, 1354
TseI GCWGC 5 cut(s) 52, 77, 291, 586, 1225
Tsp45I GTSAC 6 cut(s) 68, 218, 967, 1004, 1126, 1354
TspDTI ATGAA 9 cut(s) 54, 150, 256, 367, 818, 871, 1433, 1515, 1614
TspRI CASTG 9 cut(s) 18, 175, 586, 616, 795, 825, 1182, 1237, 1308
Van91I CCANNNNNTGG 1 cut(s) 689
VneI GTGCAC 1 cut(s) 1552
VpaK11BI GGWCC 3 cut(s) 4, 495, 1399
XagI CCTNNNNNAGG 1 cut(s) 737
XapI RAATTY 3 cut(s) 61, 500, 784
XceI RCATGY 1 cut(s) 219
XcmI CCANNNNNNNNNTGG 2 cut(s) 184, 1501
XmaJI CCTAGG 1 cut(s) 1424
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 7 cut(s) 56, 522, 842, 908, 1380, 1425, 1589
ZrmI AGTACT 1 cut(s) 1580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.