Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000940.1

Orthogroup ID

OG0013124

Physical Location & Seq

Genomic Coordinates Forward (+)

146100 .. 146855

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000940.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgttcttgtggatccccattggaatagtcatagccatattcagaatctcagtgggtattttcctccccttcaaaattgcaatcttcttagccacttgcaccggtctaaatctatctgtcaaaggtttagacagtacttcaacaaaatcaaaccatgaaaatagaggagtcctctatgtttgtacccacagaacacttctagacccagttatcctcagcacagctcttgccaagcccttgacagctgtcacatacagcctaagcaaaatgtctgaggtcatagccccaattaggacagtgaggttaacaagggacagaaaaaaagatggaaaaacaatgaacaagttgcttagtgaaggtgacttggtggtgtgtcctgagggtacaacatgtagagagccctatttgttgaggtttagttcactgtttgctgaattggctgatgagattgtgcctgtggctgtcaacacaaaggtgagtatgttctatgggactacagccagtgggctcaaatgtttggatcctattttcttcttgatgaaccctagacctgtgtattatgttgaaatattaggcaagttacctaaagagctgacttgtgctggtggaaaatctagctgtgaagttgctaattatatacagaggaagttgggtgatgctttggggtttgagtgtaccactcttacaaggaaggacaagtacttgatgctggctgggaatgaaggaatagtcagtgataataagaggaagaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006793 GO:0006796 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009555 GO:0009628 GO:0009987 GO:0010143 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050896 GO:0051704 GO:0055046 GO:0071704 GO:0080167 GO:0090447 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase HAD

Protein Analysis

251

Amino Acids

27.68

Weight (kDa)

9.23

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06520
fragaria_vesca	FvH4_6g38270
malus_domestica	MD09G1151400.v1.1 MD17G1139100.v1.1
prunus_persica	Prupe.3G173300_v2.0.a1
pyrus_communis	pycom09g07110 pycom17g13220
rosa_chinensis	RchiOBHm_Chr2g0151571
rosa_laevigata	RLG00000020559
rosa_multiflora	Rmu_sc0000940.1_g000032 Rmu_sc0000940.1_g000033
rosa_roxburghii	Rroxscaffold_2G00096350
rosa_rugosa	Rorug02G0426900
rosa_samantha	Rh2AG487700 Rh2BG500200 Rh2CG474200 Rh2DG511400
rosa_wichuraiana	Rw2G039980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	7, 20, 515, 528
AfaI	GTAC	5 cut(s)	136, 184, 385, 676, 701
AfiI	CCNNNNNNNGG	1 cut(s)	291
AflIII	ACRYGT	1 cut(s)	389
AgeI	ACCGGT	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	73, 141, 566
AleI	CACNNNNGTG	1 cut(s)	473
AluBI	AGCT	4 cut(s)	224, 245, 592, 618
AluI	AGCT	4 cut(s)	224, 245, 592, 618
AlwI	GGATC	4 cut(s)	7, 20, 515, 528
AsiGI	ACCGGT	1 cut(s)	101
AsuHPI	GGTGA	3 cut(s)	371, 487, 665
AxyI	CCTNAGG	1 cut(s)	378
BamHI	GGATCC	2 cut(s)	12, 520
BanII	GRGCYC	2 cut(s)	402, 510
BarI	GAAGNNNNNNTAC	2 cut(s)	683, 715
BbvCI	CCTCAGC	1 cut(s)	215
BccI	CCATC	1 cut(s)	320
BfaI	CTAG	3 cut(s)	200, 546, 615
BfmI	CTRYAG	1 cut(s)	495
BmcAI	AGTACT	2 cut(s)	136, 701
BmiI	GGNNCC	2 cut(s)	14, 522
BmrI	ACTGGG	1 cut(s)	200
BmsI	GCATC	2 cut(s)	646, 696
BmuI	ACTGGG	1 cut(s)	200
BoxI	GACNNNNGTC	1 cut(s)	245
BplI	GAGNNNNNCTC	2 cut(s)	156, 188
Bpu10I	CCTNAGC	2 cut(s)	215, 260
BsaWI	WCCGGW	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	206, 501
Bse21I	CCTNAGG	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMII	CTCAG	4 cut(s)	63, 229, 264, 369
BseNI	ACTGG	2 cut(s)	206, 501
BseRI	GAGGAG	1 cut(s)	180
BseYI	CCCAGC	1 cut(s)	713
BshTI	ACCGGT	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	2 cut(s)	326, 505
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmFI	GGGAC	2 cut(s)	326, 505
Bsp1286I	GDGCHC	2 cut(s)	402, 510
Bsp143I	GATC	2 cut(s)	12, 520
BspCNI	CTCAG	4 cut(s)	62, 228, 265, 370
BspLI	GGNNCC	2 cut(s)	14, 522
BspPI	GGATC	4 cut(s)	7, 20, 515, 528
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	206, 501
BssAI	RCCGGY	1 cut(s)	101
BssMI	GATC	2 cut(s)	12, 520
Bst4CI	ACNGT	3 cut(s)	134, 298, 426
BstC8I	GCNNGC	1 cut(s)	711
BstDEI	CTNAG	7 cut(s)	49, 88, 215, 260, 273, 350, 378
BstKTI	GATC	2 cut(s)	15, 523
BstMBI	GATC	2 cut(s)	12, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNSI	RCATGY	1 cut(s)	393
BstPAI	GACNNNNGTC	1 cut(s)	245
BstSFI	CTRYAG	1 cut(s)	495
BstX2I	RGATCY	2 cut(s)	12, 520
BstYI	RGATCY	2 cut(s)	12, 520
Bsu36I	CCTNAGG	1 cut(s)	378
BtsIMutI	CAGTG	5 cut(s)	57, 303, 422, 508, 739
Cac8I	GCNNGC	1 cut(s)	711
Cfr10I	RCCGGY	1 cut(s)	101
Csp6I	GTAC	5 cut(s)	135, 183, 384, 675, 700
CspAI	ACCGGT	1 cut(s)	101
CviAII	CATG	2 cut(s)	155, 390
CviQI	GTAC	5 cut(s)	135, 183, 384, 675, 700
DdeI	CTNAG	7 cut(s)	49, 88, 215, 260, 273, 350, 378
DpnI	GATC	2 cut(s)	14, 522
DpnII	GATC	2 cut(s)	12, 520
Eco24I	GRGCYC	2 cut(s)	402, 510
Eco81I	CCTNAGG	1 cut(s)	378
EcoT38I	GRGCYC	2 cut(s)	402, 510
FaeI	CATG	2 cut(s)	158, 393
FaqI	GGGAC	2 cut(s)	326, 505
FatI	CATG	2 cut(s)	154, 389
FriOI	GRGCYC	2 cut(s)	402, 510
FspBI	CTAG	3 cut(s)	200, 546, 615
GsaI	CCCAGC	1 cut(s)	717
HapII	CCGG	1 cut(s)	102
Hin1II	CATG	2 cut(s)	158, 393
HincII	GTYRAC	2 cut(s)	306, 466
HindII	GTYRAC	2 cut(s)	306, 466
HinfI	GANTC	2 cut(s)	45, 168
HpaI	GTTAAC	1 cut(s)	306
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	3 cut(s)	371, 487, 665
Hpy166II	GTNNAC	4 cut(s)	306, 422, 466, 675
Hpy188I	TCNGA	2 cut(s)	44, 274
Hpy188III	TCNNGA	3 cut(s)	200, 377, 535
Hpy8I	GTNNAC	4 cut(s)	306, 422, 466, 675
HpyAV	CCTTC	4 cut(s)	79, 350, 685, 716
HpyCH4III	ACNGT	3 cut(s)	134, 298, 426
HpyCH4V	TGCA	2 cut(s)	80, 99
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	7 cut(s)	49, 88, 215, 260, 273, 350, 378
Hsp92II	CATG	2 cut(s)	158, 393
KspAI	GTTAAC	1 cut(s)	306
Kzo9I	GATC	2 cut(s)	12, 520
LpnPI	CCDG	9 cut(s)	115, 219, 390, 468, 514, 564, 588, 695, 699
LweI	GCATC	2 cut(s)	646, 696
MaeI	CTAG	3 cut(s)	200, 546, 615
MaeIII	GTNAC	3 cut(s)	247, 359, 579
MalI	GATC	2 cut(s)	14, 522
MboI	GATC	2 cut(s)	12, 520
MboII	GAAGA	2 cut(s)	76, 523
MflI	RGATCY	2 cut(s)	12, 520
MhlI	GDGCHC	2 cut(s)	402, 510
MluCI	AATT	5 cut(s)	75, 288, 434, 631, 751
MlyI	GAGTC	1 cut(s)	177
MseI	TTAA	1 cut(s)	305
MslI	CAYNNNNRTG	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	437
NdeII	GATC	2 cut(s)	12, 520
NlaIII	CATG	2 cut(s)	158, 393
NlaIV	GGNNCC	2 cut(s)	14, 522
NmuCI	GTSAC	2 cut(s)	247, 359
NspI	RCATGY	1 cut(s)	393
OliI	CACNNNNGTG	1 cut(s)	473
PciI	ACATGT	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	45
PinAI	ACCGGT	1 cut(s)	101
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PscI	ACATGT	1 cut(s)	389
PshAI	GACNNNNGTC	1 cut(s)	245
PspFI	CCCAGC	1 cut(s)	713
PspN4I	GGNNCC	2 cut(s)	14, 522
PsuI	RGATCY	2 cut(s)	12, 520
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	5 cut(s)	136, 184, 385, 676, 701
RsaNI	GTAC	5 cut(s)	135, 183, 384, 675, 700
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	305
Sau3AI	GATC	2 cut(s)	12, 520
ScaI	AGTACT	2 cut(s)	136, 701
SchI	GAGTC	1 cut(s)	177
SduI	GDGCHC	2 cut(s)	402, 510
SfaNI	GCATC	2 cut(s)	646, 696
SfcI	CTRYAG	1 cut(s)	495
SmiMI	CAYNNNNRTG	1 cut(s)	473
Sse9I	AATT	5 cut(s)	75, 288, 434, 631, 751
SspI	AATATT	1 cut(s)	570
SspMI	CTAG	3 cut(s)	200, 546, 615
TaaI	ACNGT	3 cut(s)	134, 298, 426
TasI	AATT	5 cut(s)	75, 288, 434, 631, 751
TatI	WGTACW	2 cut(s)	134, 699
TfiI	GAWTC	1 cut(s)	45
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TscAI	CASTG	5 cut(s)	57, 303, 429, 508, 739
TseFI	GTSAC	2 cut(s)	247, 359
Tsp45I	GTSAC	2 cut(s)	247, 359
TspDTI	ATGAA	4 cut(s)	171, 353, 554, 735
TspRI	CASTG	5 cut(s)	57, 303, 429, 508, 739
XbaI	TCTAGA	1 cut(s)	199
XceI	RCATGY	1 cut(s)	393
XspI	CTAG	3 cut(s)	200, 546, 615
ZrmI	AGTACT	2 cut(s)	136, 701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.