MD09G1151400.v1.1

glycerol-3-phosphate acyltransferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
11947398 .. 11949734
2337 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1151400.v1.1.491

Sequence Viewer

Length: 1626 bp
ATGGTCCTCCTAATGGTTCTTCTCAAACTCACAGACTGGGTTTTGTACCAGCTGCTAGCAAACTCATGCCAAAGAGCTGCAAGAAAAGTGAGAAACTATGGTTCCCTCGTAGGCAATTCTCCTCCTCTCACATCACCGCAAAAACAACCCTTTTCATTTCCCAGTGTCACAAAGTGTAATTTAGAGGGCAGAGAGTATGACAAAATTGCATGTGACATTTTTGGATCCCTTTTGAAATCCCCATCTGTCTTCCCTTACTTCATGCTTGTTGCCTTTGAAGGTGGCAGCATTTTGAGAGCCCTTCTCTTGCTTCTATCGTACCCGATCTTGCTGGTTTTCAACAACGAGCACAGATTAAGGGTCATGATTTTCATAACTTTTTGTGGTCTCAGAAAAAAAGATATGGAGAGTGTTGGAAGGGCTGTTTTGCCCAAGTTTTATCTGGAAAATCTCAACCTTCAGGTGTATGAGGTTTTGGCCTCAGCGGGATCTAGGGTTGTCCTCACAAGTGTCCCTAGAGTCATGGTTGAACATTTTCTCAAGGATTATTTGGAAGTTGGTGATGTTTTGGGGACTGAGTTGCACACCATCGGGCATTACTTCACTGGTTTGTTATCCAAGTCTGGTTTTCTTGTGAAGCACAAAGCTCTCAAGAAACATTTTGGAGACAAAAAACCAGATATTGGAATTGGTTCTTCAAGCCTCCAAGATCAACTCTTTACATCCCTCTGCAAGGAAGCCTATGTAGTGAACAAGGAAGACAGCAAGAGTGGGGCAAAATCAGCAATGGCTAGGCACAAGCTCCCAAAGCCAGTAATATTTCATGATGGAAGGCTAGCATTCTTGCCTACTCCATCTGCAACCCTAGCCATGTTTTTGTGGCTCCCTATTGGAATAATCCTAGCCATATTCAGGATCTCAGTTGGCATCATCCTCCCCTACGAAATTGCCCTATTTTTGGCCTGCTGGACAGGTGTCAATCTCTCAGTCAAAGGATGCATAAACTCCACTTCTTCAAATCCACAAAAAACGGGAGTCCTCTATGTTTGCACGCACAGAACCCTACTGGACCCAGTTTTCCTCAGTACAGCCTTACGCAAGCCTTTAACTGCTGTCACATACAGCCTGAGCAAAATGTCCGAAATCTTAGCGCCGATCAAGACCGTCCGGTTAACCAGAGACCGAAAACAAGACGGTGAAACCATGGAGAGGCTACTTAGTGAAGGAGATTTGGTCGTTTGCCCTGAAGGAACAACGTGTCGAGAGCCATATTTGCTTAGATTCAGCTCACTCTTTGCAGAACTGGCTGATGAGATTGTGCCAGTGGCTATCAACACAAATGTGAGCATGTTTTATGGCACAACAGCCAGTGGATTAAAATGCTTGGACCCAATTTTCTTCCTGATGAACCCTAGGCCTGCATATTACGTTGAGGTTCTTGGGAAGCTCCCAAAAGAGCTTACTTGTGCTGGGGGGAAGTCTAGCAATGAAGTGGCTAATTACATCCAGAGGAAATTGGCTGATGCTTTGGGTTTTGAGTGCACCTCTCTTACAAGGAGGGATAAGTATTTGATGCTGGCTGGGAATGAAGGAATTGTCCCTGTTAATAAGAGAAAGAAGCCTTAA

Protein Analysis

542

Amino Acids

60.1

Weight (kDa)

9.33

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAD_RAM2_N PF23270 69 - 250 4.6e-68 Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
HAD PF12710 75 - 229 5.7e-10 haloacid dehalogenase-like hydrolase
Acyltransferase PF01553 340 - 444 5.3e-10 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013124)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 683
AciI CCGC 2 cut(s) 137, 485
AclWI GGATC 4 cut(s) 219, 232, 496, 923
AcuI CTGAAG 2 cut(s) 443, 1266
AdeI CACNNNGTG 1 cut(s) 174
AfaI GTAC 3 cut(s) 47, 320, 1087
AfiI CCNNNNNNNGG 6 cut(s) 13, 683, 733, 912, 958, 1209
AflIII ACRYGT 1 cut(s) 1256
AgsI TTSAA 6 cut(s) 235, 278, 340, 530, 699, 1017
AleI CACNNNNGTG 1 cut(s) 1340
AluBI AGCT 7 cut(s) 52, 77, 647, 802, 1287, 1447, 1459
AluI AGCT 7 cut(s) 52, 77, 647, 802, 1287, 1447, 1459
Alw21I GWGCWC 2 cut(s) 351, 1544
Alw26I GTCTC 3 cut(s) 392, 660, 1173
Alw44I GTGCAC 1 cut(s) 1540
AlwI GGATC 4 cut(s) 219, 232, 496, 923
AoxI GGCC 3 cut(s) 477, 960, 1415
ApaLI GTGCAC 1 cut(s) 1540
ApeKI GCWGC 3 cut(s) 52, 77, 285
Asp700I GAANNNNTTC 2 cut(s) 534, 691
AspA2I CCTAGG 1 cut(s) 1412
AspLEI GCGC 1 cut(s) 1153
AspS9I GGNCC 3 cut(s) 4, 1069, 1387
AsuHPI GGTGA 3 cut(s) 126, 572, 1208
AsuNHI GCTAGC 2 cut(s) 55, 835
AvaII GGWCC 3 cut(s) 4, 1069, 1387
AvrII CCTAGG 1 cut(s) 1412
BaeGI GKGCMC 1 cut(s) 1544
BamHI GGATCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 301
BbsI GAAGAC 2 cut(s) 241, 765
Bbv12I GWGCWC 2 cut(s) 351, 1544
BbvCI CCTCAGC 1 cut(s) 481
BbvI GCAGC 3 cut(s) 39, 64, 297
BccI CCATC 4 cut(s) 250, 596, 821, 862
BcoDI GTCTC 3 cut(s) 392, 660, 1173
BfaI CTAG 9 cut(s) 56, 492, 516, 792, 836, 866, 902, 1413, 1482
BfoI RGCGCY 1 cut(s) 1154
BisI GCNGC 3 cut(s) 53, 78, 286
BlnI CCTAGG 1 cut(s) 1412
BlsI GCNGC 3 cut(s) 54, 79, 287
Bme18I GGWCC 3 cut(s) 4, 1069, 1387
BmgT120I GGNCC 3 cut(s) 4, 1069, 1387
BmiI GGNNCC 5 cut(s) 103, 226, 884, 1071, 1389
BmrI ACTGGG 3 cut(s) 46, 156, 1067
BmsI GCATC 4 cut(s) 936, 986, 1513, 1563
BmtI GCTAGC 2 cut(s) 59, 839
BmuI ACTGGG 3 cut(s) 46, 156, 1067
BoxI GACNNNNGTC 1 cut(s) 974
BpiI GAAGAC 2 cut(s) 241, 765
BplI GAGNNNNNCTC 4 cut(s) 288, 320, 1529, 1561
Bpu10I CCTNAGC 2 cut(s) 481, 1127
BpuEI CTTGAG 2 cut(s) 524, 635
BsaI GGTCTC 2 cut(s) 392, 1173
BsaJI CCNNGG 2 cut(s) 1203, 1412
BsaWI WCCGGW 1 cut(s) 1167
BsaXI ACNNNNNCTCC 2 cut(s) 1218, 1248
Bsc4I CCNNNNNNNGG 6 cut(s) 13, 683, 733, 912, 958, 1209
Bse1I ACTGG 9 cut(s) 41, 162, 610, 812, 1071, 1073, 1308, 1322, 1368
Bse3DI GCAATG 2 cut(s) 792, 1492
BseDI CCNNGG 2 cut(s) 1203, 1412
BseGI GGATG 4 cut(s) 722, 930, 1001, 1503
BseLI CCNNNNNNNGG 6 cut(s) 13, 683, 733, 912, 958, 1209
BseMI GCAATG 2 cut(s) 792, 1492
BseMII CTCAG 7 cut(s) 403, 495, 567, 933, 999, 1096, 1118
BseNI ACTGG 9 cut(s) 41, 162, 610, 812, 1071, 1073, 1308, 1322, 1368
BseRI GAGGAG 2 cut(s) 111, 114
BseSI GKGCMC 1 cut(s) 1544
BseXI GCAGC 3 cut(s) 39, 64, 297
BseYI CCCAGC 2 cut(s) 1469, 1580
BshFI GGCC 3 cut(s) 479, 962, 1417
BsiHKAI GWGCWC 2 cut(s) 351, 1544
BsiSI CCGG 1 cut(s) 1168
BslFI GGGAC 3 cut(s) 497, 586, 1583
BslI CCNNNNNNNGG 6 cut(s) 13, 683, 733, 912, 958, 1209
BsmAI GTCTC 3 cut(s) 392, 660, 1173
BsmFI GGGAC 3 cut(s) 497, 586, 1583
BsmI GAATGC 1 cut(s) 839
BsnI GGCC 3 cut(s) 479, 962, 1417
Bso31I GGTCTC 2 cut(s) 392, 1173
Bsp1286I GDGCHC 3 cut(s) 301, 351, 1544
Bsp143I GATC 6 cut(s) 224, 324, 488, 709, 915, 1155
Bsp19I CCATGG 1 cut(s) 1203
BspACI CCGC 2 cut(s) 137, 485
BspANI GGCC 3 cut(s) 479, 962, 1417
BspCNI CTCAG 7 cut(s) 402, 494, 568, 932, 998, 1095, 1119
BspHI TCATGA 2 cut(s) 363, 823
BspLI GGNNCC 5 cut(s) 103, 226, 884, 1071, 1389
BspOI GCTAGC 2 cut(s) 59, 839
BspPI GGATC 4 cut(s) 219, 232, 496, 923
BspTNI GGTCTC 2 cut(s) 392, 1173
BsrDI GCAATG 2 cut(s) 792, 1492
BsrI ACTGG 9 cut(s) 41, 162, 610, 812, 1071, 1073, 1308, 1322, 1368
BssECI CCNNGG 2 cut(s) 1203, 1412
BssMI GATC 6 cut(s) 224, 324, 488, 709, 915, 1155
BssT1I CCWWGG 2 cut(s) 1203, 1412
Bst4CI ACNGT 2 cut(s) 1165, 1196
BstC8I GCNNGC 7 cut(s) 57, 837, 964, 1052, 1100, 1419, 1578
BstDSI CCRYGG 1 cut(s) 1203
BstENI CCTNNNNNAGG 1 cut(s) 731
BstF5I GGATG 4 cut(s) 722, 930, 1001, 1503
BstH2I RGCGCY 1 cut(s) 1154
BstHHI GCGC 1 cut(s) 1153
BstKTI GATC 6 cut(s) 227, 327, 491, 712, 918, 1158
BstMAI GTCTC 3 cut(s) 392, 660, 1173
BstMBI GATC 6 cut(s) 224, 324, 488, 709, 915, 1155
BstMWI GCNNNNNNNGC 5 cut(s) 782, 808, 866, 1273, 1304
BstNSI RCATGY 2 cut(s) 213, 1351
BstPAI GACNNNNGTC 1 cut(s) 974
BstSLI GKGCMC 1 cut(s) 1544
BstV1I GCAGC 3 cut(s) 39, 64, 297
BstV2I GAAGAC 2 cut(s) 241, 765
BstX2I RGATCY 3 cut(s) 224, 488, 915
BstYI RGATCY 3 cut(s) 224, 488, 915
BsuRI GGCC 3 cut(s) 479, 962, 1417
BtgI CCRYGG 1 cut(s) 1203
BtsCI GGATG 4 cut(s) 722, 930, 1001, 1503
BtsIMutI CAGTG 4 cut(s) 169, 603, 1329, 1375
Cac8I GCNNGC 7 cut(s) 57, 837, 964, 1052, 1100, 1419, 1578
CciI TCATGA 2 cut(s) 363, 823
CfoI GCGC 1 cut(s) 1153
Cfr13I GGNCC 3 cut(s) 4, 1069, 1387
Csp6I GTAC 3 cut(s) 46, 319, 1086
CviAII CATG 9 cut(s) 66, 210, 262, 364, 523, 824, 871, 1204, 1348
CviQI GTAC 3 cut(s) 46, 319, 1086
DpnI GATC 6 cut(s) 226, 326, 490, 711, 917, 1157
DpnII GATC 6 cut(s) 224, 324, 488, 709, 915, 1155
DraIII CACNNNGTG 1 cut(s) 174
Eco130I CCWWGG 2 cut(s) 1203, 1412
Eco147I AGGCCT 1 cut(s) 1417
Eco24I GRGCYC 1 cut(s) 301
Eco31I GGTCTC 2 cut(s) 392, 1173
Eco47I GGWCC 3 cut(s) 4, 1069, 1387
Eco57I CTGAAG 2 cut(s) 443, 1266
EcoNI CCTNNNNNAGG 1 cut(s) 731
EcoT14I CCWWGG 2 cut(s) 1203, 1412
EcoT22I ATGCAT 1 cut(s) 1001
EcoT38I GRGCYC 1 cut(s) 301
ErhI CCWWGG 2 cut(s) 1203, 1412
FaeI CATG 9 cut(s) 69, 213, 265, 367, 526, 827, 874, 1207, 1351
FaqI GGGAC 3 cut(s) 497, 586, 1583
FatI CATG 9 cut(s) 65, 209, 261, 363, 522, 823, 870, 1203, 1347
FauI CCCGC 1 cut(s) 478
Fnu4HI GCNGC 3 cut(s) 53, 78, 286
FokI GGATG 4 cut(s) 709, 917, 1008, 1490
FriOI GRGCYC 1 cut(s) 301
Fsp4HI GCNGC 3 cut(s) 53, 78, 286
FspBI CTAG 9 cut(s) 56, 492, 516, 792, 836, 866, 902, 1413, 1482
GlaI GCGC 1 cut(s) 1152
GluI GCNGC 3 cut(s) 53, 78, 286
GsaI CCCAGC 2 cut(s) 1473, 1584
HaeII RGCGCY 1 cut(s) 1154
HaeIII GGCC 3 cut(s) 479, 962, 1417
HapII CCGG 1 cut(s) 1168
HhaI GCGC 1 cut(s) 1153
Hin1II CATG 9 cut(s) 69, 213, 265, 367, 526, 827, 874, 1207, 1351
Hin6I GCGC 1 cut(s) 1151
HinP1I GCGC 1 cut(s) 1151
HincII GTYRAC 1 cut(s) 1173
HindII GTYRAC 1 cut(s) 1173
HinfI GANTC 3 cut(s) 519, 1035, 1281
HpaI GTTAAC 1 cut(s) 1173
HpaII CCGG 1 cut(s) 1168
HphI GGTGA 3 cut(s) 126, 572, 1208
Hpy166II GTNNAC 3 cut(s) 751, 1173, 1542
Hpy188I TCNGA 2 cut(s) 392, 1141
Hpy188III TCNNGA 9 cut(s) 364, 443, 652, 824, 913, 1159, 1262, 1402, 1507
Hpy8I GTNNAC 3 cut(s) 751, 1173, 1542
HpyAV CCTTC 8 cut(s) 272, 311, 411, 467, 825, 1217, 1241, 1583
HpyCH4III ACNGT 2 cut(s) 1165, 1196
HpyCH4IV ACGT 2 cut(s) 1256, 1428
HpyF10VI GCNNNNNNNGC 5 cut(s) 782, 808, 866, 1273, 1304
HpySE526I ACGT 2 cut(s) 1256, 1428
Hsp92II CATG 9 cut(s) 69, 213, 265, 367, 526, 827, 874, 1207, 1351
HspAI GCGC 1 cut(s) 1151
KspAI GTTAAC 1 cut(s) 1173
Kzo9I GATC 6 cut(s) 224, 324, 488, 709, 915, 1155
LmnI GCTCC 3 cut(s) 807, 888, 1452
Lsp1109I GCAGC 3 cut(s) 39, 64, 297
LweI GCATC 4 cut(s) 936, 986, 1513, 1563
MaeI CTAG 9 cut(s) 56, 492, 516, 792, 836, 866, 902, 1413, 1482
MaeII ACGT 2 cut(s) 1256, 1428
MaeIII GTNAC 3 cut(s) 166, 212, 1114
MalI GATC 6 cut(s) 226, 326, 490, 711, 917, 1157
MboI GATC 6 cut(s) 224, 324, 488, 709, 915, 1155
MboII GAAGA 6 cut(s) 11, 241, 687, 770, 1005, 1390
MflI RGATCY 3 cut(s) 224, 488, 915
MhlI GDGCHC 3 cut(s) 301, 351, 1544
MluCI AATT 9 cut(s) 115, 178, 204, 687, 945, 1392, 1498, 1514, 1593
MlyI GAGTC 2 cut(s) 528, 1044
MmeI TCCRAC 1 cut(s) 394
Mph1103I ATGCAT 1 cut(s) 1001
MroXI GAANNNNTTC 2 cut(s) 534, 691
MseI TTAA 6 cut(s) 356, 1106, 1172, 1376, 1605, 1624
MslI CAYNNNNRTG 1 cut(s) 1340
MspA1I CMGCKG 2 cut(s) 52, 485
MspI CCGG 1 cut(s) 1168
Mva1269I GAATGC 1 cut(s) 839
MwoI GCNNNNNNNGC 5 cut(s) 782, 808, 866, 1273, 1304
NcoI CCATGG 1 cut(s) 1203
NdeII GATC 6 cut(s) 224, 324, 488, 709, 915, 1155
NheI GCTAGC 2 cut(s) 55, 835
NlaIII CATG 9 cut(s) 69, 213, 265, 367, 526, 827, 874, 1207, 1351
NlaIV GGNNCC 5 cut(s) 103, 226, 884, 1071, 1389
NmuCI GTSAC 3 cut(s) 166, 212, 1114
NsiI ATGCAT 1 cut(s) 1001
NspI RCATGY 2 cut(s) 213, 1351
OliI CACNNNNGTG 1 cut(s) 1340
PagI TCATGA 2 cut(s) 363, 823
PceI AGGCCT 1 cut(s) 1417
PctI GAATGC 1 cut(s) 839
PdmI GAANNNNTTC 2 cut(s) 534, 691
PfeI GAWTC 1 cut(s) 1281
PflMI CCANNNNNTGG 1 cut(s) 683
PkrI GCNGC 3 cut(s) 54, 79, 287
PleI GAGTC 2 cut(s) 527, 1043
PpsI GAGTC 2 cut(s) 527, 1043
PshAI GACNNNNGTC 1 cut(s) 974
PspFI CCCAGC 2 cut(s) 1469, 1580
PspN4I GGNNCC 5 cut(s) 103, 226, 884, 1071, 1389
PspPI GGNCC 3 cut(s) 4, 1069, 1387
PsuI RGATCY 3 cut(s) 224, 488, 915
PvuII CAGCTG 1 cut(s) 52
RsaI GTAC 3 cut(s) 47, 320, 1087
RsaNI GTAC 3 cut(s) 46, 319, 1086
RseI CAYNNNNRTG 1 cut(s) 1340
SaqAI TTAA 6 cut(s) 356, 1106, 1172, 1376, 1605, 1624
SatI GCNGC 3 cut(s) 53, 78, 286
Sau3AI GATC 6 cut(s) 224, 324, 488, 709, 915, 1155
Sau96I GGNCC 3 cut(s) 4, 1069, 1387
SchI GAGTC 2 cut(s) 528, 1044
SduI GDGCHC 3 cut(s) 301, 351, 1544
SfaNI GCATC 4 cut(s) 936, 986, 1513, 1563
SinI GGWCC 3 cut(s) 4, 1069, 1387
SmiMI CAYNNNNRTG 1 cut(s) 1340
SmlI CTYRAG 2 cut(s) 539, 650
SmoI CTYRAG 2 cut(s) 539, 650
Sse9I AATT 9 cut(s) 115, 178, 204, 687, 945, 1392, 1498, 1514, 1593
SseBI AGGCCT 1 cut(s) 1417
SsiI CCGC 2 cut(s) 137, 485
SspI AATATT 1 cut(s) 819
SspMI CTAG 9 cut(s) 56, 492, 516, 792, 836, 866, 902, 1413, 1482
StuI AGGCCT 1 cut(s) 1417
StyI CCWWGG 2 cut(s) 1203, 1412
TaaI ACNGT 2 cut(s) 1165, 1196
TaiI ACGT 2 cut(s) 1259, 1431
TaqI TCGA 1 cut(s) 1261
TaqII GACCGA 1 cut(s) 1197
TasI AATT 9 cut(s) 115, 178, 204, 687, 945, 1392, 1498, 1514, 1593
TatI WGTACW 1 cut(s) 1085
TfiI GAWTC 1 cut(s) 1281
Tru1I TTAA 6 cut(s) 356, 1106, 1172, 1376, 1605, 1624
Tru9I TTAA 6 cut(s) 356, 1106, 1172, 1376, 1605, 1624
TscAI CASTG 4 cut(s) 169, 610, 1329, 1375
TseFI GTSAC 3 cut(s) 166, 212, 1114
TseI GCWGC 3 cut(s) 52, 77, 285
Tsp45I GTSAC 3 cut(s) 166, 212, 1114
TspDTI ATGAA 7 cut(s) 144, 250, 361, 812, 1421, 1503, 1602
TspRI CASTG 4 cut(s) 169, 610, 1329, 1375
Van91I CCANNNNNTGG 1 cut(s) 683
VneI GTGCAC 1 cut(s) 1540
VpaK11BI GGWCC 3 cut(s) 4, 1069, 1387
XagI CCTNNNNNAGG 1 cut(s) 731
XceI RCATGY 2 cut(s) 213, 1351
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XmaJI CCTAGG 1 cut(s) 1412
XmnI GAANNNNTTC 2 cut(s) 534, 691
XspI CTAG 9 cut(s) 56, 492, 516, 792, 836, 866, 902, 1413, 1482
Zsp2I ATGCAT 1 cut(s) 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.