Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0013124

Physical Location & Seq

Genomic Coordinates Forward (+)

63939864 .. 63942838

Gene Structure 2975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG474200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGGTCCTCCCAATGGTACTTCTCAAGCTCACAGACTGGGTGTGGTACCAGCTGTTGGCAAATTCATGTCAAAGAGCAGCAAGGAAAGTCAGAAACTATGGCTCTCCCAAGCCCCACCAATTACCTCAACCTCCTTCTTTCCCTAATATTACCAAGTGTGGAAGCATTATTAGAGCCTTTCTATTGTTGCTGTCATGCTCTTTTTTGTGGGTTTTGGACTATGAACTCCAATTTAGGGTCATGATTTTCATAACCTTTTGTGGGCTTAAGATTAAGCACATGGAGAGTGTTGGAAGGGCCGTCTTACCCAAGTTTTATCTTGAAAATCTTAATCTTCATGCCTATGAGGCTTTGGCTTCAACTGGGTCTAAGGTGGTTTTTACCAGTGTCCCTAGAGTCATGGTGGAAGGGTTCCTTCAGGAGTATTTGGATGTTGATGATGTTAAGGGGACTGAGTTGCTCACTTCTGGGCACTACTTCACCGGTTTGTTGTCTAAATCTGGTTTGCTTATGAAGCACAGAGCTCTAAAGGAATATTTTGGTGACAGAATACCAGATATTGGACTAGGAACTTCAAGCCTCCATGATGATCTCTTCATCTCTCTTTGCAAGGAAGCTTATGTAGTGAACAAGGAAGACAGCAAGAGCAATTCAAGTACTTCAGTGTTGCCAAGGCACAGATACCCCAAGCCCTTAATATTCCATGATGGAAGGCTAGCTTTCTTGCCTACTCCATTAGCAACTCTCTCCATGTTCTTGTGGATCCCCATTGGAATAGTCATAGCCATATTCAGAATCTCAGTGGGTATTTTCCTCCCCTTCAAAATTGCACTCTTCTTAGCCACTTGCACCGGTCTAAATCTATCTGTCAAAGGTTTAGACAGTACTTCAACAAAATCAGACCATGAAAATAGAGGAGTCCTCTATGTTTGTACCCACAGAACACTTCTAGACCCAGTTATCCTCAGCACAGCTCTTGCCAAGCCCTTGACAGCTGTCACATACAGCCTAAGCAAAATGTCTGAGGTCATAGCCCCAATTAGGACAGTGAGGTTAACAAGGGACAGAAAAAAAGATGGAAAAACAATGAACAAGTTGCTTAGTGAAGGTGACTTGGTGGTGTGTCCTGAGGGTACAACATGTAGAGAGCCCTATTTGTTGAGGTTTAGTTCACTGTTTGCTGAATTGGCTGATGAGATTGTGCCTGTGGCTGTCAACACAAAGGTGAGTATGTTCTATGGGACTACAGCCAGTGGGCTCAAATGTTTGGATCCTATTTTCTTCTTGATGAACCCTAGACCTGTGTATTATGTTGAAATATTAGGCAAGTTACCTAAAGAGCTGACTTGTGCTGGTGGAAAATCTAGCTGTGAAGTTGCTAATTATATACAGAGGAAGTTGGGTGATGCTTTGGGGTTTGAGTGTACCACTCTTACAAGGAAGGACAAGTACTTGATGCTGGCTGGGAATGAAGGAATAGTCAGTGATAATAAGAGGAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006793 GO:0006796 GO:0007275 GO:0007276 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009555 GO:0009628 GO:0009987 GO:0010143 GO:0016020 GO:0016311 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016791 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050896 GO:0051704 GO:0055046 GO:0071704 GO:0080167 GO:0090447 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase HAD

Protein Analysis

501

Amino Acids

55.97

Weight (kDa)

9.23

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_RAM2_N	PF23270	53 - 209	4.5e-49	Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
HAD	PF12710	75 - 189	2.3e-07	haloacid dehalogenase-like hydrolase
Acyltransferase	PF01553	303 - 404	5.2e-09	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06520
fragaria_vesca	FvH4_6g38270
malus_domestica	MD09G1151400.v1.1 MD17G1139100.v1.1
prunus_persica	Prupe.3G173300_v2.0.a1
pyrus_communis	pycom09g07110 pycom17g13220
rosa_chinensis	RchiOBHm_Chr2g0151571
rosa_laevigata	RLG00000020559
rosa_multiflora	Rmu_sc0000940.1_g000032 Rmu_sc0000940.1_g000033
rosa_roxburghii	Rroxscaffold_2G00096350
rosa_rugosa	Rorug02G0426900
rosa_samantha	Rh2AG487700 Rh2BG500200 Rh2CG474200 Rh2DG511400
rosa_wichuraiana	Rw2G039980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	45
AccB7I	CCANNNNNTGG	2 cut(s)	55, 560
AclWI	GGATC	4 cut(s)	757, 770, 1265, 1278
AcsI	RAATTY	1 cut(s)	61
AcuI	CTGAAG	2 cut(s)	401, 645
AfaI	GTAC	8 cut(s)	18, 47, 658, 886, 934, 1135, 1426, 1451
AfiI	CCNNNNNNNGG	6 cut(s)	13, 55, 235, 261, 560, 1041
AflII	CTTAAG	1 cut(s)	266
AflIII	ACRYGT	1 cut(s)	1139
AgeI	ACCGGT	2 cut(s)	482, 851
AgsI	TTSAA	7 cut(s)	323, 360, 576, 654, 823, 891, 1316
AleI	CACNNNNGTG	1 cut(s)	1223
AluBI	AGCT	9 cut(s)	28, 52, 524, 617, 719, 974, 995, 1342, 1368
AluI	AGCT	9 cut(s)	28, 52, 524, 617, 719, 974, 995, 1342, 1368
Alw21I	GWGCWC	1 cut(s)	526
AlwI	GGATC	4 cut(s)	757, 770, 1265, 1278
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	61
AsiGI	ACCGGT	2 cut(s)	482, 851
Asp718I	GGTACC	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	4, 297
AsuHPI	GGTGA	5 cut(s)	472, 554, 1121, 1237, 1415
AsuNHI	GCTAGC	1 cut(s)	715
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	1128
BaeGI	GKGCMC	1 cut(s)	474
BamHI	GGATCC	2 cut(s)	762, 1270
BanI	GGYRCC	1 cut(s)	45
BanII	GRGCYC	3 cut(s)	526, 1152, 1260
BarI	GAAGNNNNNNTAC	2 cut(s)	1433, 1465
BbsI	GAAGAC	1 cut(s)	642
Bbv12I	GWGCWC	1 cut(s)	526
BbvCI	CCTCAGC	1 cut(s)	965
BbvI	GCAGC	1 cut(s)	89
BccI	CCATC	2 cut(s)	701, 1070
BceAI	ACGGC	1 cut(s)	284
BfaI	CTAG	6 cut(s)	393, 566, 716, 950, 1296, 1365
BfmI	CTRYAG	1 cut(s)	1245
BfrI	CTTAAG	1 cut(s)	266
BglI	GCCNNNNNGGC	1 cut(s)	347
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
BmcAI	AGTACT	3 cut(s)	658, 886, 1451
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 297
BmiI	GGNNCC	4 cut(s)	47, 413, 764, 1272
BmrI	ACTGGG	3 cut(s)	46, 372, 950
BmsI	GCATC	2 cut(s)	1396, 1446
BmtI	GCTAGC	1 cut(s)	719
BmuI	ACTGGG	3 cut(s)	46, 372, 950
BoxI	GACNNNNGTC	1 cut(s)	995
BpiI	GAAGAC	1 cut(s)	642
BplI	GAGNNNNNCTC	2 cut(s)	906, 938
Bpu10I	CCTNAGC	2 cut(s)	965, 1010
BpuEI	CTTGAG	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	671
BsaWI	WCCGGW	2 cut(s)	482, 851
Bsc4I	CCNNNNNNNGG	6 cut(s)	13, 55, 235, 261, 560, 1041
Bse118I	RCCGGY	2 cut(s)	482, 851
Bse1I	ACTGG	5 cut(s)	41, 367, 384, 956, 1251
Bse21I	CCTNAGG	1 cut(s)	1128
BseDI	CCNNGG	1 cut(s)	671
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	6 cut(s)	13, 55, 235, 261, 560, 1041
BseMII	CTCAG	5 cut(s)	444, 813, 979, 1014, 1119
BseNI	ACTGG	5 cut(s)	41, 367, 384, 956, 1251
BseRI	GAGGAG	1 cut(s)	930
BseSI	GKGCMC	1 cut(s)	474
BseXI	GCAGC	1 cut(s)	89
BseYI	CCCAGC	1 cut(s)	1463
BshFI	GGCC	1 cut(s)	299
BshNI	GGYRCC	1 cut(s)	45
BshTI	ACCGGT	2 cut(s)	482, 851
BsiHKAI	GWGCWC	1 cut(s)	526
BsiSI	CCGG	2 cut(s)	483, 852
BslFI	GGGAC	4 cut(s)	374, 463, 1076, 1255
BslI	CCNNNNNNNGG	6 cut(s)	13, 55, 235, 261, 560, 1041
BsmFI	GGGAC	4 cut(s)	374, 463, 1076, 1255
BsnI	GGCC	1 cut(s)	299
Bsp1286I	GDGCHC	4 cut(s)	474, 526, 1152, 1260
Bsp143I	GATC	3 cut(s)	589, 762, 1270
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	5 cut(s)	445, 812, 978, 1015, 1120
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	4 cut(s)	47, 413, 764, 1272
BspOI	GCTAGC	1 cut(s)	719
BspPI	GGATC	4 cut(s)	757, 770, 1265, 1278
BspT107I	GGYRCC	1 cut(s)	45
BspTI	CTTAAG	1 cut(s)	266
BsrFI	RCCGGY	2 cut(s)	482, 851
BsrI	ACTGG	5 cut(s)	41, 367, 384, 956, 1251
BssAI	RCCGGY	2 cut(s)	482, 851
BssECI	CCNNGG	1 cut(s)	671
BssMI	GATC	3 cut(s)	589, 762, 1270
BssT1I	CCWWGG	1 cut(s)	671
Bst4CI	ACNGT	3 cut(s)	884, 1048, 1176
Bst6I	CTCTTC	2 cut(s)	599, 839
BstAFI	CTTAAG	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	717, 1461
BstDEI	CTNAG	9 cut(s)	369, 453, 799, 838, 965, 1010, 1023, 1100, 1128
BstF5I	GGATG	1 cut(s)	436
BstKTI	GATC	3 cut(s)	592, 765, 1273
BstMBI	GATC	3 cut(s)	589, 762, 1270
BstMWI	GCNNNNNNNGC	3 cut(s)	347, 514, 1187
BstNSI	RCATGY	1 cut(s)	1143
BstPAI	GACNNNNGTC	1 cut(s)	995
BstSFI	CTRYAG	1 cut(s)	1245
BstSLI	GKGCMC	1 cut(s)	474
BstV1I	GCAGC	1 cut(s)	89
BstV2I	GAAGAC	1 cut(s)	642
BstX2I	RGATCY	2 cut(s)	762, 1270
BstYI	RGATCY	2 cut(s)	762, 1270
Bsu36I	CCTNAGG	1 cut(s)	1128
BsuRI	GGCC	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	436
BtsIMutI	CAGTG	7 cut(s)	391, 669, 807, 1053, 1172, 1258, 1489
Cac8I	GCNNGC	2 cut(s)	717, 1461
CciI	TCATGA	1 cut(s)	240
Cfr10I	RCCGGY	2 cut(s)	482, 851
Cfr13I	GGNCC	2 cut(s)	4, 297
Csp6I	GTAC	8 cut(s)	17, 46, 657, 885, 933, 1134, 1425, 1450
CspAI	ACCGGT	2 cut(s)	482, 851
CviQI	GTAC	8 cut(s)	17, 46, 657, 885, 933, 1134, 1425, 1450
DdeI	CTNAG	9 cut(s)	369, 453, 799, 838, 965, 1010, 1023, 1100, 1128
DpnI	GATC	3 cut(s)	591, 764, 1272
DpnII	GATC	3 cut(s)	589, 762, 1270
Eam1104I	CTCTTC	2 cut(s)	599, 839
EarI	CTCTTC	2 cut(s)	599, 839
Ecl136II	GAGCTC	1 cut(s)	524
Eco130I	CCWWGG	1 cut(s)	671
Eco24I	GRGCYC	3 cut(s)	526, 1152, 1260
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	524
Eco57I	CTGAAG	2 cut(s)	401, 645
Eco81I	CCTNAGG	1 cut(s)	1128
EcoICRI	GAGCTC	1 cut(s)	524
EcoT14I	CCWWGG	1 cut(s)	671
EcoT38I	GRGCYC	3 cut(s)	526, 1152, 1260
ErhI	CCWWGG	1 cut(s)	671
FalI	AAGNNNNNCTT	4 cut(s)	399, 431, 703, 735
FaqI	GGGAC	4 cut(s)	374, 463, 1076, 1255
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	1 cut(s)	443
FriOI	GRGCYC	3 cut(s)	526, 1152, 1260
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	6 cut(s)	393, 566, 716, 950, 1296, 1365
GluI	GCNGC	1 cut(s)	78
GsaI	CCCAGC	1 cut(s)	1467
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	2 cut(s)	483, 852
HincII	GTYRAC	2 cut(s)	1056, 1216
HindII	GTYRAC	2 cut(s)	1056, 1216
HindIII	AAGCTT	1 cut(s)	615
HinfI	GANTC	3 cut(s)	396, 795, 918
HpaI	GTTAAC	1 cut(s)	1056
HpaII	CCGG	2 cut(s)	483, 852
HphI	GGTGA	5 cut(s)	472, 554, 1121, 1237, 1415
Hpy166II	GTNNAC	5 cut(s)	628, 1056, 1172, 1216, 1425
Hpy188I	TCNGA	4 cut(s)	92, 794, 901, 1024
Hpy188III	TCNNGA	6 cut(s)	241, 320, 419, 950, 1127, 1285
Hpy8I	GTNNAC	5 cut(s)	628, 1056, 1172, 1216, 1425
HpyAV	CCTTC	9 cut(s)	144, 288, 401, 425, 705, 829, 1100, 1435, 1466
HpyCH4III	ACNGT	3 cut(s)	884, 1048, 1176
HpyCH4V	TGCA	3 cut(s)	609, 830, 849
HpyF10VI	GCNNNNNNNGC	3 cut(s)	347, 514, 1187
HpyF3I	CTNAG	9 cut(s)	369, 453, 799, 838, 965, 1010, 1023, 1100, 1128
KpnI	GGTACC	1 cut(s)	49
KspAI	GTTAAC	1 cut(s)	1056
Kzo9I	GATC	3 cut(s)	589, 762, 1270
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	2 cut(s)	1396, 1446
MaeI	CTAG	6 cut(s)	393, 566, 716, 950, 1296, 1365
MaeIII	GTNAC	4 cut(s)	542, 997, 1109, 1329
MalI	GATC	3 cut(s)	591, 764, 1272
MboI	GATC	3 cut(s)	589, 762, 1270
MboII	GAAGA	5 cut(s)	326, 586, 647, 826, 1273
MflI	RGATCY	2 cut(s)	762, 1270
MhlI	GDGCHC	4 cut(s)	474, 526, 1152, 1260
MluCI	AATT	8 cut(s)	61, 119, 230, 649, 825, 1038, 1184, 1381
MlyI	GAGTC	2 cut(s)	405, 927
MmeI	TCCRAC	1 cut(s)	271
MseI	TTAA	6 cut(s)	267, 273, 330, 444, 695, 1055
MslI	CAYNNNNRTG	2 cut(s)	342, 1223
MspA1I	CMGCKG	2 cut(s)	52, 995
MspCI	CTTAAG	1 cut(s)	266
MspI	CCGG	2 cut(s)	483, 852
MwoI	GCNNNNNNNGC	3 cut(s)	347, 514, 1187
NdeII	GATC	3 cut(s)	589, 762, 1270
NheI	GCTAGC	1 cut(s)	715
NlaIV	GGNNCC	4 cut(s)	47, 413, 764, 1272
NmuCI	GTSAC	3 cut(s)	542, 997, 1109
NspI	RCATGY	1 cut(s)	1143
OliI	CACNNNNGTG	1 cut(s)	1223
PagI	TCATGA	1 cut(s)	240
PciI	ACATGT	1 cut(s)	1139
PfeI	GAWTC	1 cut(s)	795
PflMI	CCANNNNNTGG	2 cut(s)	55, 560
PinAI	ACCGGT	2 cut(s)	482, 851
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	2 cut(s)	404, 926
PpsI	GAGTC	2 cut(s)	404, 926
PscI	ACATGT	1 cut(s)	1139
PshAI	GACNNNNGTC	1 cut(s)	995
Psp124BI	GAGCTC	1 cut(s)	526
PspFI	CCCAGC	1 cut(s)	1463
PspN4I	GGNNCC	4 cut(s)	47, 413, 764, 1272
PspPI	GGNCC	2 cut(s)	4, 297
PsuI	RGATCY	2 cut(s)	762, 1270
PvuII	CAGCTG	2 cut(s)	52, 995
RsaI	GTAC	8 cut(s)	18, 47, 658, 886, 934, 1135, 1426, 1451
RsaNI	GTAC	8 cut(s)	17, 46, 657, 885, 933, 1134, 1425, 1450
RseI	CAYNNNNRTG	2 cut(s)	342, 1223
SacI	GAGCTC	1 cut(s)	526
SaqAI	TTAA	6 cut(s)	267, 273, 330, 444, 695, 1055
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	3 cut(s)	589, 762, 1270
Sau96I	GGNCC	2 cut(s)	4, 297
ScaI	AGTACT	3 cut(s)	658, 886, 1451
SchI	GAGTC	2 cut(s)	405, 927
SduI	GDGCHC	4 cut(s)	474, 526, 1152, 1260
SfaNI	GCATC	2 cut(s)	1396, 1446
SfcI	CTRYAG	1 cut(s)	1245
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	342, 1223
SmlI	CTYRAG	2 cut(s)	23, 266
SmoI	CTYRAG	2 cut(s)	23, 266
Sse9I	AATT	8 cut(s)	61, 119, 230, 649, 825, 1038, 1184, 1381
SspI	AATATT	4 cut(s)	148, 536, 699, 1320
SspMI	CTAG	6 cut(s)	393, 566, 716, 950, 1296, 1365
SstI	GAGCTC	1 cut(s)	526
StyI	CCWWGG	1 cut(s)	671
TaaI	ACNGT	3 cut(s)	884, 1048, 1176
TasI	AATT	8 cut(s)	61, 119, 230, 649, 825, 1038, 1184, 1381
TatI	WGTACW	3 cut(s)	656, 884, 1449
TfiI	GAWTC	1 cut(s)	795
Tru1I	TTAA	6 cut(s)	267, 273, 330, 444, 695, 1055
Tru9I	TTAA	6 cut(s)	267, 273, 330, 444, 695, 1055
TscAI	CASTG	7 cut(s)	391, 669, 807, 1053, 1179, 1258, 1489
TseFI	GTSAC	3 cut(s)	542, 997, 1109
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	3 cut(s)	542, 997, 1109
TspRI	CASTG	7 cut(s)	391, 669, 807, 1053, 1179, 1258, 1489
Van91I	CCANNNNNTGG	2 cut(s)	55, 560
Vha464I	CTTAAG	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	61
XbaI	TCTAGA	1 cut(s)	949
XceI	RCATGY	1 cut(s)	1143
XspI	CTAG	6 cut(s)	393, 566, 716, 950, 1296, 1365
ZrmI	AGTACT	3 cut(s)	658, 886, 1451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.