FvH4_6g38970

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
30815784 .. 30820557
4774 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38970.t5

Sequence Viewer

Length: 1806 bp
ATGCCTCAAGCCCTTTTCTTAAAGCCCTTCATTTCTGCTCCTTTGGACAATTGGAGTAAATTGAAAGAATGCACAAATTCTATAGGTGGCAATGTCAAGATGCGTGGAAGACTGGAGGTAGTTTGTATGGGAATGTTGGCACCGAGAAAGTTCTTGCAGAAAAGGAAGAAAGTAGAGGTCTTTAAAGACGCTGCCGATGAGGCTGACCAGAAGAACTGGAGGAGACTGATGAATGAAATTGAAGAGAAGGGTTCCGCTGTTACAGTGCTCAAAAGTGAAAAGCTCAAAAATAAGATGATACCTAAGGATGTTGTTCTCGGAACGTTGGTTAGATTCAAGCAATTGAGGAAATGGAACCTTGTTGGTGAGATTCTTGAATGGCTTCAGACTCAGGACTGGTGGGACTTCAGCGAAATGGATTTTCTGATGCTTATAACAGCTTATGGGAAGCAAGGCAAGTTCAATAGGGCTGAGAAGGTTTTAAGCTTGTTGAATGAAAAGAGCTATGCACCAAGTGTAATATCGCATACTGCTCTTATGGAAGCATATGGAAAAGGAGGCCGCTACAACAATGCTGAAGCAATATTTCGGAGAATGCAGTCTTCAGGGCCTGAACCATCTGCTGTGACTTATCAGATCATACTAAAAATATTCGTTGAGGGCTGCAAGTTTCAGGAAGCTGAAGAAATCTTTGAGACCCTTTTAGATGACGAAAAGTCACCTTTAAAGCCAGACCAAAAGATGTTCCACATGATGATCTATATGTTTAAGAAGGCCGGAAGTTATGAAAAAGCTCGTAAGATGTTTGCAGTGATGACTGAGAGAGGGATTCGGCAATCAACAGTTACTTATAATAGCTTAATGTCGTTTGAAAATAACTATAAGGAAGTGTCAAAGATGTACAACCAGATGCAGAGAGCTGGTCTCCGACCTGACGTAGTGAGTTATGCCTTACTCATAAGTGCTTATGGGAAAGCTAGAAGAGAGGAAGAAGCCTTGGCTGTTTTCGAGGAAATGCTTGATGCTGGTGTCAGACCTACCCGTAAAGCATACAATATTTTGCTCGACGCATTTGCAGTATCAGGAATGGTGGACCAAGCTCGAACTGTTTTTAAAAGCATGAGAAGGGACAGGTATGAACCCGATATTTACTCGTATACCACTATGCTGTCTGCTTATGTAAATGCACCTGACATGGAGGGTGCTGAAAAATTCTTCACAAGACTAAAGGTAGATGGATTTAAACCCAACGTTGTCACTTATGGAACCTTAATCAAAGGGTATGCTAAGACAAATGATATCGAGAAAATGATGGAGAAGTATGAGGAAATGCAGGCATGTGGTGTCAAACCAAATCAAACGATCTTGACAACCATAATGGATGCATATGGCAAGAACAGAGATTTTGGGAGTGCTGTTGTTTGGTACAAGGAAATGGAATCTTGCAGGCTTCCTCCTGATCAGAAAGCAAAGAATATCCTTTTATCTTTGGCAAAAACAGCAGAAGAACAACAGTTAGCTAACCAAGTTGTAGGATACTTGGATAATAGTAGCATTGAAAACCTTCTGTCAATCTCTGTTAATGATAATGATGAGGATGAAGATAATGACGAAGACGATGAAGACGACGAAGATGACGATGAAGACGATGAAGATGACGATGAAAGTTATGAAGAGGAAGTCGATGGTCCTTCACCAGTCGCTTCATCATATGACGATAAACAAGAACAAGAACCTGAGCTGGTTTATTTAAACGGTGATGCTGAAAAAAACCTCGAGGACTTGCTTACAGTGGCTGAATTGTAA

Protein Analysis

602

Amino Acids

68.9

Weight (kDa)

4.83

Isoelectric Point (pI)

42.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 148 - 237 1.8e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 171 - 217 2.6e-08 PPR repeat family
PPR_long PF17177 243 - 365 6.1e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 302 - 358 6.9e-12 Pentatricopeptide repeat domain
TPR_24 PF23276 303 - 407 4.3e-07 Fungal tetratrico peptide repeats
PPR_1 PF12854 308 - 339 2.5e-06 PPR repeat
PPR_2 PF13041 311 - 359 8.9e-12 PPR repeat family
PPR PF01535 314 - 344 2.3e-06 PPR repeat
PPR_2 PF13041 350 - 394 2.9e-10 PPR repeat family
PPR_long PF17177 364 - 462 1.1e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 370 - 427 5.8e-11 Pentatricopeptide repeat domain
PPR_2 PF13041 381 - 430 1e-12 PPR repeat family
PPR_3 PF13812 410 - 466 1.1e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 412 - 444 3.4e-06 PPR repeat
PPR_2 PF13041 416 - 453 5.9e-09 PPR repeat family
PPR PF01535 419 - 449 5.6e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 434, 852
AbsI CCTCGAGG 1 cut(s) 1775
AccB1I GGYRCC 1 cut(s) 139
AccI GTMKAC 1 cut(s) 1157
AciI CCGC 2 cut(s) 255, 562
AclI AACGTT 2 cut(s) 323, 1251
AcsI RAATTY 2 cut(s) 76, 1211
AcuI CTGAAG 5 cut(s) 368, 391, 588, 597, 702
AdeI CACNNNGTG 1 cut(s) 515
AfaI GTAC 2 cut(s) 902, 1427
AgsI TTSAA 8 cut(s) 64, 242, 337, 377, 463, 493, 872, 1559
AhdI GACNNNNNGTC 1 cut(s) 715
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 3 cut(s) 217, 689, 929
AlwNI CAGNNNCTG 2 cut(s) 611, 1796
Ama87I CYCGRG 1 cut(s) 1775
AoxI GGCC 3 cut(s) 559, 608, 774
ApeKI GCWGC 2 cut(s) 191, 663
ApoI RAATTY 2 cut(s) 76, 1211
Asp700I GAANNNNTTC 2 cut(s) 381, 1563
AspS9I GGNCC 3 cut(s) 608, 1093, 1688
AsuHPI GGTGA 4 cut(s) 377, 711, 1686, 1769
AvaI CYCGRG 1 cut(s) 1775
AvaII GGWCC 2 cut(s) 1093, 1688
AxyI CCTNAGG 1 cut(s) 303
BanI GGYRCC 1 cut(s) 139
BbsI GAAGAC 5 cut(s) 115, 594, 1620, 1629, 1650
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 2 cut(s) 178, 650
BccI CCATC 4 cut(s) 625, 1229, 1306, 1679
BcgI CGANNNNNNTGC 2 cut(s) 1055, 1089
BciVI GTATCC 1 cut(s) 1529
BclI TGATCA 1 cut(s) 1459
BcoDI GTCTC 3 cut(s) 217, 689, 929
BfaI CTAG 1 cut(s) 978
BfmI CTRYAG 1 cut(s) 81
BfuI GTATCC 1 cut(s) 1529
BglI GCCNNNNNGGC 1 cut(s) 200
BisI GCNGC 3 cut(s) 192, 562, 664
BlsI GCNGC 3 cut(s) 193, 563, 665
Bme18I GGWCC 2 cut(s) 1093, 1688
BmeRI GACNNNNNGTC 1 cut(s) 715
BmeT110I CYCGRG 1 cut(s) 1775
BmgT120I GGNCC 3 cut(s) 608, 1093, 1688
BmiI GGNNCC 4 cut(s) 141, 253, 356, 1267
BmsI GCATC 6 cut(s) 90, 417, 900, 1012, 1372, 1750
BpiI GAAGAC 5 cut(s) 115, 594, 1620, 1629, 1650
BplI GAGNNNNNCTC 2 cut(s) 909, 941
BpmI CTGGAG 2 cut(s) 134, 238
Bpu10I CCTNAGC 1 cut(s) 1737
BsaI GGTCTC 2 cut(s) 689, 929
BsaJI CCNNGG 1 cut(s) 996
Bse1I ACTGG 4 cut(s) 117, 221, 401, 1697
Bse21I CCTNAGG 1 cut(s) 303
Bse3DI GCAATG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 996
BseGI GGATG 3 cut(s) 313, 1387, 1603
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 4 cut(s) 404, 462, 810, 1728
BseNI ACTGG 4 cut(s) 117, 221, 401, 1697
BseRI GAGGAG 1 cut(s) 235
BseXI GCAGC 2 cut(s) 178, 650
BshFI GGCC 3 cut(s) 561, 610, 776
BshNI GGYRCC 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 1775
BsiSI CCGG 1 cut(s) 777
BslFI GGGAC 2 cut(s) 416, 1142
BsmAI GTCTC 3 cut(s) 217, 689, 929
BsmFI GGGAC 2 cut(s) 416, 1142
BsmI GAATGC 2 cut(s) 74, 600
BsnI GGCC 3 cut(s) 561, 610, 776
Bso31I GGTCTC 2 cut(s) 689, 929
BsoBI CYCGRG 1 cut(s) 1775
Bsp1286I GDGCHC 1 cut(s) 270
Bsp1407I TGTACA 1 cut(s) 900
Bsp143I GATC 4 cut(s) 636, 756, 1362, 1459
BspACI CCGC 2 cut(s) 255, 562
BspANI GGCC 3 cut(s) 561, 610, 776
BspCNI CTCAG 4 cut(s) 403, 463, 811, 1729
BspLI GGNNCC 4 cut(s) 141, 253, 356, 1267
BspT107I GGYRCC 1 cut(s) 139
BspTNI GGTCTC 2 cut(s) 689, 929
BsrDI GCAATG 1 cut(s) 97
BsrGI TGTACA 1 cut(s) 900
BsrI ACTGG 4 cut(s) 117, 221, 401, 1697
BssECI CCNNGG 1 cut(s) 996
BssMI GATC 4 cut(s) 636, 756, 1362, 1459
BssNAI GTATAC 1 cut(s) 1158
BssT1I CCWWGG 1 cut(s) 996
Bst1107I GTATAC 1 cut(s) 1158
Bst4CI ACNGT 6 cut(s) 265, 844, 1108, 1515, 1757, 1792
Bst6I CTCTTC 3 cut(s) 237, 976, 1668
BstAUI TGTACA 1 cut(s) 900
BstC8I GCNNGC 2 cut(s) 1335, 1448
BstDEI CTNAG 6 cut(s) 303, 390, 471, 819, 1287, 1737
BstF5I GGATG 3 cut(s) 313, 1387, 1603
BstKTI GATC 4 cut(s) 639, 759, 1365, 1462
BstMAI GTCTC 3 cut(s) 217, 689, 929
BstMBI GATC 4 cut(s) 636, 756, 1362, 1459
BstMWI GCNNNNNNNGC 2 cut(s) 200, 1499
BstNSI RCATGY 1 cut(s) 1341
BstSFI CTRYAG 1 cut(s) 81
BstV1I GCAGC 2 cut(s) 178, 650
BstV2I GAAGAC 5 cut(s) 115, 594, 1620, 1629, 1650
BstZ17I GTATAC 1 cut(s) 1158
Bsu36I CCTNAGG 1 cut(s) 303
BsuI GTATCC 1 cut(s) 1529
BsuRI GGCC 3 cut(s) 561, 610, 776
BtsCI GGATG 3 cut(s) 313, 1387, 1603
BtsI GCAGTG 1 cut(s) 816
BtsIMutI CAGTG 3 cut(s) 270, 816, 1797
Cac8I GCNNGC 2 cut(s) 1335, 1448
CaiI CAGNNNCTG 2 cut(s) 611, 1796
Cfr13I GGNCC 3 cut(s) 608, 1093, 1688
CseI GACGC 2 cut(s) 197, 1076
Csp6I GTAC 2 cut(s) 901, 1426
CspCI CAANNNNNGTGG 2 cut(s) 85, 120
CviAII CATG 4 cut(s) 751, 1120, 1195, 1338
CviQI GTAC 2 cut(s) 901, 1426
DdeI CTNAG 6 cut(s) 303, 390, 471, 819, 1287, 1737
DpnI GATC 4 cut(s) 638, 758, 1364, 1461
DpnII GATC 4 cut(s) 636, 756, 1362, 1459
DraI TTTAAA 5 cut(s) 184, 726, 1114, 1243, 1752
DraIII CACNNNGTG 1 cut(s) 515
DriI GACNNNNNGTC 1 cut(s) 715
Eam1104I CTCTTC 3 cut(s) 237, 976, 1668
Eam1105I GACNNNNNGTC 1 cut(s) 715
EarI CTCTTC 3 cut(s) 237, 976, 1668
Eco130I CCWWGG 1 cut(s) 996
Eco31I GGTCTC 2 cut(s) 689, 929
Eco32I GATATC 1 cut(s) 1300
Eco47I GGWCC 2 cut(s) 1093, 1688
Eco57I CTGAAG 5 cut(s) 368, 391, 588, 597, 702
Eco81I CCTNAGG 1 cut(s) 303
Eco88I CYCGRG 1 cut(s) 1775
EcoO109I RGGNCCY 1 cut(s) 608
EcoRV GATATC 1 cut(s) 1300
EcoT14I CCWWGG 1 cut(s) 996
EcoT22I ATGCAT 1 cut(s) 1387
ErhI CCWWGG 1 cut(s) 996
FaeI CATG 4 cut(s) 754, 1123, 1198, 1341
FaqI GGGAC 2 cut(s) 416, 1142
FatI CATG 4 cut(s) 750, 1119, 1194, 1337
FauNDI CATATG 3 cut(s) 547, 1387, 1711
FbaI TGATCA 1 cut(s) 1459
FblI GTMKAC 1 cut(s) 1157
Fnu4HI GCNGC 3 cut(s) 192, 562, 664
FokI GGATG 3 cut(s) 320, 1394, 1610
Fsp4HI GCNGC 3 cut(s) 192, 562, 664
FspBI CTAG 1 cut(s) 978
GluI GCNGC 3 cut(s) 192, 562, 664
GsuI CTGGAG 2 cut(s) 134, 238
HaeIII GGCC 3 cut(s) 561, 610, 776
HapII CCGG 1 cut(s) 777
HgaI GACGC 2 cut(s) 197, 1076
Hin1II CATG 4 cut(s) 754, 1123, 1198, 1341
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 5 cut(s) 333, 370, 388, 829, 1439
HpaII CCGG 1 cut(s) 777
HphI GGTGA 4 cut(s) 377, 711, 1686, 1769
Hpy166II GTNNAC 2 cut(s) 1093, 1158
Hpy188I TCNGA 8 cut(s) 320, 387, 426, 591, 636, 929, 1034, 1464
Hpy188III TCNNGA 8 cut(s) 97, 374, 392, 674, 1083, 1303, 1366, 1457
Hpy8I GTNNAC 2 cut(s) 1093, 1158
Hpy99I CGWCG 2 cut(s) 1070, 1631
HpyAV CCTTC 7 cut(s) 37, 241, 469, 766, 1119, 1574, 1701
HpyCH4III ACNGT 6 cut(s) 265, 844, 1108, 1515, 1757, 1792
HpyCH4IV ACGT 3 cut(s) 323, 936, 1251
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 1499
HpyF3I CTNAG 6 cut(s) 303, 390, 471, 819, 1287, 1737
HpySE526I ACGT 3 cut(s) 323, 936, 1251
Hsp92II CATG 4 cut(s) 754, 1123, 1198, 1341
Ksp22I TGATCA 1 cut(s) 1459
Kzo9I GATC 4 cut(s) 636, 756, 1362, 1459
LmnI GCTCC 1 cut(s) 43
Lsp1109I GCAGC 2 cut(s) 178, 650
LweI GCATC 6 cut(s) 90, 417, 900, 1012, 1372, 1750
MaeI CTAG 1 cut(s) 978
MaeII ACGT 3 cut(s) 323, 936, 1251
MaeIII GTNAC 5 cut(s) 259, 625, 717, 844, 1255
MalI GATC 4 cut(s) 638, 758, 1364, 1461
MboI GATC 4 cut(s) 636, 756, 1362, 1459
MfeI CAATTG 2 cut(s) 49, 341
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 7 cut(s) 49, 59, 76, 237, 341, 1211, 1799
MlyI GAGTC 1 cut(s) 382
MmeI TCCRAC 1 cut(s) 952
Mph1103I ATGCAT 1 cut(s) 1387
MroXI GAANNNNTTC 2 cut(s) 381, 1563
MspA1I CMGCKG 1 cut(s) 257
MspI CCGG 1 cut(s) 777
MunI CAATTG 2 cut(s) 49, 341
Mva1269I GAATGC 2 cut(s) 74, 600
MwoI GCNNNNNNNGC 2 cut(s) 200, 1499
NdeI CATATG 3 cut(s) 547, 1387, 1711
NdeII GATC 4 cut(s) 636, 756, 1362, 1459
NlaIII CATG 4 cut(s) 754, 1123, 1198, 1341
NlaIV GGNNCC 4 cut(s) 141, 253, 356, 1267
NmuCI GTSAC 3 cut(s) 625, 717, 1255
NsiI ATGCAT 1 cut(s) 1387
NspI RCATGY 1 cut(s) 1341
PaeR7I CTCGAG 1 cut(s) 1775
PcsI WCGNNNNNNNCGW 3 cut(s) 1623, 1635, 1644
PctI GAATGC 2 cut(s) 74, 600
PdmI GAANNNNTTC 2 cut(s) 381, 1563
PfeI GAWTC 4 cut(s) 333, 370, 829, 1439
PkrI GCNGC 3 cut(s) 193, 563, 665
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
PsiI TTATAA 2 cut(s) 434, 852
Psp1406I AACGTT 2 cut(s) 323, 1251
PspN4I GGNNCC 4 cut(s) 141, 253, 356, 1267
PspPI GGNCC 3 cut(s) 608, 1093, 1688
PspXI VCTCGAGB 1 cut(s) 1775
PstNI CAGNNNCTG 2 cut(s) 611, 1796
RsaI GTAC 2 cut(s) 902, 1427
RsaNI GTAC 2 cut(s) 901, 1426
SatI GCNGC 3 cut(s) 192, 562, 664
Sau3AI GATC 4 cut(s) 636, 756, 1362, 1459
Sau96I GGNCC 3 cut(s) 608, 1093, 1688
SchI GAGTC 1 cut(s) 382
SduI GDGCHC 1 cut(s) 270
SfaNI GCATC 6 cut(s) 90, 417, 900, 1012, 1372, 1750
SfcI CTRYAG 1 cut(s) 81
Sfr274I CTCGAG 1 cut(s) 1775
SinI GGWCC 2 cut(s) 1093, 1688
SlaI CTCGAG 1 cut(s) 1775
SmlI CTYRAG 2 cut(s) 6, 1775
SmoI CTYRAG 2 cut(s) 6, 1775
Sse9I AATT 7 cut(s) 49, 59, 76, 237, 341, 1211, 1799
SsiI CCGC 2 cut(s) 255, 562
SspI AATATT 3 cut(s) 585, 651, 1057
SspMI CTAG 1 cut(s) 978
StyI CCWWGG 1 cut(s) 996
TaaI ACNGT 6 cut(s) 265, 844, 1108, 1515, 1757, 1792
TaiI ACGT 3 cut(s) 326, 939, 1254
TaqI TCGA 6 cut(s) 1008, 1065, 1102, 1302, 1683, 1776
TasI AATT 7 cut(s) 49, 59, 76, 237, 341, 1211, 1799
TatI WGTACW 1 cut(s) 900
TauI GCSGC 1 cut(s) 564
TfiI GAWTC 4 cut(s) 333, 370, 829, 1439
TscAI CASTG 3 cut(s) 270, 816, 1797
TseFI GTSAC 3 cut(s) 625, 717, 1255
TseI GCWGC 2 cut(s) 191, 663
Tsp45I GTSAC 3 cut(s) 625, 717, 1255
TspRI CASTG 3 cut(s) 270, 816, 1797
VpaK11BI GGWCC 2 cut(s) 1093, 1688
XapI RAATTY 2 cut(s) 76, 1211
XceI RCATGY 1 cut(s) 1341
XhoI CTCGAG 1 cut(s) 1775
XmiI GTMKAC 1 cut(s) 1157
XmnI GAANNNNTTC 2 cut(s) 381, 1563
XspI CTAG 1 cut(s) 978
Zsp2I ATGCAT 1 cut(s) 1387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.