Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007987

Physical Location & Seq

Genomic Coordinates Reverse (-)

67295931 .. 67300248

Gene Structure 4318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G041270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1776 bp

ATGCCTCAAGCCCTTTTCTTGAAGCCCTTCATTTCCGCTCCTTTGGATAATTGGAGTAAATTGAAAGAATGCACAAATTCTATAGGTGCCAATGTGAAGATGCGTGGAAGACTGGAGGTGGTTTGTATGGGAATGCTGGCACCAAGAAAGTTCTTGCAGAAAAGAAAGAAAGTGGAGGTTTTTAAAGACGTTGGCGATGAGGCTGACCAGAAGAACTGGAGGAGACTGATGAATGAAATCGAAGAGAAGGGTTCTGCTGTTGCAGTGCTCAAAAGCGAAAAGCTCAAAAACAAGACTATTCCTAAGGATCTTGTTCTTGGAACGTTGGTTAGATTCAAGCAATTGAGGAAATGGAACCTTGTCGGTGAGATTCTTGAATGGCTTCAGACTCAGGACTGGTGGGACTTCAGCGAAATGGATTTTCTGATGCTTATAACAGCTTATGGAAAGCAAGGCAAATTCAACAGGGCTGAGAAGGTTTTAAGCTTGTTGAATGAAAAGGGCTATGCACCAAGTGTAATATCGCATACTGCTCTTATGGAAGCATATGGAAAAGGAGGCCGATACAATAATGCTGAAGCAATATTTCGAAGAATGCAGTCTTCAGGGCCTGAACCATCTGCTGTGACATATCAAATTATACTAAAAATATTTGTTGAGGGCTGCAAGTTTAAGGAAGCTGAAGAAATCTTTGAGACCCTTTTGGATGAGGAAAAGCCACCTTTAAAGCCAGACCAAAAGATGTTCCACATGATGATCTATATGTTTAAGAAGGCTGGAAGTTATGAAAAAGCTCGTAAGATGTTTGCAGTGATGACTGAGAGAGGGGTTCGGCAATCAACAGTTACTTATAATAGCCTAATGTCGTTTGAAACTAACTACAAGGAAGTATCAAAGATGTACAACCAGATGCAAAGAGCTGGTCTCCGACCTGATGTTGTGAGTTATGCTTTACTCATTAATGCTTATGGGAAAGCTAGAAGAGAGGAAGAAGCCTTAGCTGTTTTTGAGGAAATGCTTGATGCTGGTGTCAGACCTACCCGCAAAGCATACAATATTTTGCTTGACGCATTTGCAGTATCAGGAATGGTGGACCAAGCTCGAACTGTTTTTAAAAGCATGAGAAGGGACAGGTATGAACCCGATATATACTCGTATACCACTATGCTGTCAGCTTATGTAAATGCACCCGACATGGAAGGTGCTGAAAAATTCTTCACAAGACTAAAGCAAGATGGATTCAAACCCAATGTCGTCACTTATGGGACCTTAATCAAAGGTTATGCTAAGACAAATGATATTGAGAAGATGATGGAGAAATATGAGGAAATGCAGGCATGTGTCAAACCAAATCAAACGATCTTGACAACCATAATGGATGCGTATGGCAAGAACATTGATTTTGGGAGTGCTGCTGTTTGGTACAAGGAAATGGAATCCTGCAGGCTTACTCCTGATCAGAAAGCAAAGAATATCCTTTTATCTTTGGCAAAAACTGTAGAAGAACAACAGTTAGCAAACCAAATTGTAGGATATTTGGATAATACTAGCAATGAACAAGGACTTGGTCGTTTATCAATCTCTGTTGAGCAGAATGATGAGGATGAAGACAATTACGAAGATGATGAAGACGACGATGACAGTTATGATGAGGAAGTCGATGGTCCTTCACAGGTCACTTCATCATATGATGATGAACAAGAAAGTGAGCTGGTTTATTTAAATGCTGATAGTGAAAAAAACCTCGATGACTTACTTACAGTGGCTGAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

591

Amino Acids

67.79

Weight (kDa)

5.11

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	139 - 185	9.9e-06	Pentatricopeptide repeat domain
TPR_24	PF23276	148 - 239	3.7e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	171 - 217	2.5e-08	PPR repeat family
PPR_long	PF17177	245 - 365	9.7e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	302 - 358	9.8e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	308 - 339	1.2e-06	PPR repeat
PPR_2	PF13041	311 - 359	4.3e-12	PPR repeat family
PPR	PF01535	314 - 344	2e-06	PPR repeat
PPR_2	PF13041	350 - 394	2.8e-10	PPR repeat family
TPR_24	PF23276	351 - 443	7.2e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	364 - 482	6.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	370 - 428	2.3e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	381 - 430	2.2e-13	PPR repeat family
PPR_1	PF12854	412 - 444	3.3e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59040 AT3G59040
fragaria_vesca	FvH4_6g38970 FvH4_6g38970 FvH4_6g38970 FvH4_6g38970 FvH4_6g38970
malus_domestica	MD09G1145700.v1.1
prunus_persica	Prupe.3G180100_v2.0.a1
pyrus_communis	pycom09g06600
rosa_chinensis	RchiOBHm_Chr2g0152561
rosa_laevigata	RLG00000020646
rosa_multiflora	Rmu_co8487657.1_g000002 Rmu_sc0027676.1_g000001 Rmu_sc0027677.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095600
rosa_rugosa	Rorug02G0434500
rosa_samantha	Rh2AG495800 Rh2BG507600 Rh2CG482000 Rh2DG518900
rosa_wichuraiana	Rw0G004830 Rw2G040790 Rw2G041270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	434, 852
AccB1I	GGYRCC	2 cut(s)	86, 139
AccBSI	CCGCTC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	1157
AciI	CCGC	2 cut(s)	36, 1042
AclI	AACGTT	1 cut(s)	323
AclWI	GGATC	1 cut(s)	315
AcsI	RAATTY	3 cut(s)	76, 458, 1211
AcuI	CTGAAG	5 cut(s)	368, 391, 588, 597, 702
AdeI	CACNNNGTG	1 cut(s)	515
AfaI	GTAC	2 cut(s)	902, 1424
AgsI	TTSAA	8 cut(s)	22, 64, 337, 377, 463, 493, 872, 1243
AjuI	GAANNNNNNNTTGG	2 cut(s)	1548, 1580
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	3 cut(s)	217, 689, 929
AlwI	GGATC	1 cut(s)	315
AlwNI	CAGNNNCTG	2 cut(s)	611, 1766
AoxI	GGCC	2 cut(s)	559, 608
ApeKI	GCWGC	2 cut(s)	663, 1412
ApoI	RAATTY	3 cut(s)	76, 458, 1211
ArsI	GACNNNNNNTTYG	4 cut(s)	907, 939, 1236, 1268
AseI	ATTAAT	1 cut(s)	960
Asp700I	GAANNNNTTC	2 cut(s)	26, 381
AspS9I	GGNCC	4 cut(s)	608, 1093, 1266, 1664
AsuHPI	GGTGA	1 cut(s)	377
AsuII	TTCGAA	1 cut(s)	589
AvaII	GGWCC	3 cut(s)	1093, 1266, 1664
AxyI	CCTNAGG	1 cut(s)	303
BanI	GGYRCC	2 cut(s)	86, 139
BbsI	GAAGAC	4 cut(s)	115, 594, 1614, 1635
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	650, 1399
BccI	CCATC	4 cut(s)	625, 1229, 1306, 1655
BclI	TGATCA	1 cut(s)	1456
BcoDI	GTCTC	3 cut(s)	217, 689, 929
BfaI	CTAG	2 cut(s)	978, 1548
BfmI	CTRYAG	3 cut(s)	81, 1441, 1497
BisI	GCNGC	2 cut(s)	664, 1413
BlsI	GCNGC	2 cut(s)	665, 1414
Bme18I	GGWCC	3 cut(s)	1093, 1266, 1664
BmgT120I	GGNCC	4 cut(s)	608, 1093, 1266, 1664
BmiI	GGNNCC	4 cut(s)	88, 141, 356, 1267
BmsI	GCATC	5 cut(s)	90, 417, 900, 1012, 1369
BpiI	GAAGAC	4 cut(s)	115, 594, 1614, 1635
BplI	GAGNNNNNCTC	2 cut(s)	909, 941
BpmI	CTGGAG	2 cut(s)	134, 238
Bpu10I	CCTNAGC	1 cut(s)	997
Bpu14I	TTCGAA	1 cut(s)	589
BsaI	GGTCTC	2 cut(s)	689, 929
Bse1I	ACTGG	3 cut(s)	117, 221, 401
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	1558
BseGI	GGATG	3 cut(s)	712, 1384, 1609
BseMI	GCAATG	1 cut(s)	1558
BseMII	CTCAG	3 cut(s)	404, 462, 810
BseNI	ACTGG	3 cut(s)	117, 221, 401
BseRI	GAGGAG	1 cut(s)	235
BseXI	GCAGC	2 cut(s)	650, 1399
BshFI	GGCC	2 cut(s)	561, 610
BshNI	GGYRCC	2 cut(s)	86, 139
BsiHKAI	GWGCWC	1 cut(s)	270
BslFI	GGGAC	3 cut(s)	416, 1142, 1279
BsmAI	GTCTC	3 cut(s)	217, 689, 929
BsmFI	GGGAC	3 cut(s)	416, 1142, 1279
BsmI	GAATGC	3 cut(s)	74, 138, 600
BsnI	GGCC	2 cut(s)	561, 610
Bso31I	GGTCTC	2 cut(s)	689, 929
Bsp119I	TTCGAA	1 cut(s)	589
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp1407I	TGTACA	1 cut(s)	900
Bsp143I	GATC	4 cut(s)	307, 756, 1359, 1456
BspACI	CCGC	2 cut(s)	36, 1042
BspANI	GGCC	2 cut(s)	561, 610
BspCNI	CTCAG	3 cut(s)	403, 463, 811
BspLI	GGNNCC	4 cut(s)	88, 141, 356, 1267
BspMAI	CTGCAG	1 cut(s)	1445
BspPI	GGATC	1 cut(s)	315
BspT104I	TTCGAA	1 cut(s)	589
BspT107I	GGYRCC	2 cut(s)	86, 139
BspTNI	GGTCTC	2 cut(s)	689, 929
BsrBI	CCGCTC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	1558
BsrGI	TGTACA	1 cut(s)	900
BsrI	ACTGG	3 cut(s)	117, 221, 401
BssMI	GATC	4 cut(s)	307, 756, 1359, 1456
BssNAI	GTATAC	1 cut(s)	1158
Bst1107I	GTATAC	1 cut(s)	1158
Bst4CI	ACNGT	6 cut(s)	844, 1108, 1498, 1512, 1643, 1762
Bst6I	CTCTTC	2 cut(s)	237, 976
BstAUI	TGTACA	1 cut(s)	900
BstBI	TTCGAA	1 cut(s)	589
BstC8I	GCNNGC	3 cut(s)	138, 1335, 1445
BstDEI	CTNAG	6 cut(s)	303, 390, 471, 819, 997, 1287
BstF5I	GGATG	3 cut(s)	712, 1384, 1609
BstKTI	GATC	4 cut(s)	310, 759, 1362, 1459
BstMAI	GTCTC	3 cut(s)	217, 689, 929
BstMBI	GATC	4 cut(s)	307, 756, 1359, 1456
BstNSI	RCATGY	1 cut(s)	1341
BstSFI	CTRYAG	3 cut(s)	81, 1441, 1497
BstV1I	GCAGC	2 cut(s)	650, 1399
BstV2I	GAAGAC	4 cut(s)	115, 594, 1614, 1635
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BstZ17I	GTATAC	1 cut(s)	1158
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	561, 610
BtgZI	GCGATG	1 cut(s)	210
BtsCI	GGATG	3 cut(s)	712, 1384, 1609
BtsI	GCAGTG	2 cut(s)	270, 816
BtsIMutI	CAGTG	3 cut(s)	270, 816, 1767
Cac8I	GCNNGC	3 cut(s)	138, 1335, 1445
CaiI	CAGNNNCTG	2 cut(s)	611, 1766
Cfr13I	GGNCC	4 cut(s)	608, 1093, 1266, 1664
CseI	GACGC	1 cut(s)	1076
Csp6I	GTAC	2 cut(s)	901, 1423
CviAII	CATG	4 cut(s)	751, 1120, 1195, 1338
CviQI	GTAC	2 cut(s)	901, 1423
DdeI	CTNAG	6 cut(s)	303, 390, 471, 819, 997, 1287
DpnI	GATC	4 cut(s)	309, 758, 1361, 1458
DpnII	GATC	4 cut(s)	307, 756, 1359, 1456
DraI	TTTAAA	4 cut(s)	184, 726, 1114, 1722
DraIII	CACNNNGTG	1 cut(s)	515
Eam1104I	CTCTTC	2 cut(s)	237, 976
EarI	CTCTTC	2 cut(s)	237, 976
Eco31I	GGTCTC	2 cut(s)	689, 929
Eco47I	GGWCC	3 cut(s)	1093, 1266, 1664
Eco57I	CTGAAG	5 cut(s)	368, 391, 588, 597, 702
Eco81I	CCTNAGG	1 cut(s)	303
EcoO109I	RGGNCCY	2 cut(s)	608, 1266
FaeI	CATG	4 cut(s)	754, 1123, 1198, 1341
FaqI	GGGAC	3 cut(s)	416, 1142, 1279
FatI	CATG	4 cut(s)	750, 1119, 1194, 1337
FauI	CCCGC	1 cut(s)	1049
FauNDI	CATATG	2 cut(s)	547, 1687
FbaI	TGATCA	1 cut(s)	1456
FblI	GTMKAC	1 cut(s)	1157
Fnu4HI	GCNGC	2 cut(s)	664, 1413
FokI	GGATG	3 cut(s)	719, 1391, 1616
Fsp4HI	GCNGC	2 cut(s)	664, 1413
FspBI	CTAG	2 cut(s)	978, 1548
GluI	GCNGC	2 cut(s)	664, 1413
GsuI	CTGGAG	2 cut(s)	134, 238
HaeIII	GGCC	2 cut(s)	561, 610
HgaI	GACGC	1 cut(s)	1076
Hin1II	CATG	4 cut(s)	754, 1123, 1198, 1341
HindIII	AAGCTT	1 cut(s)	484
HinfI	GANTC	5 cut(s)	333, 370, 388, 1239, 1436
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	2 cut(s)	1093, 1158
Hpy188I	TCNGA	5 cut(s)	387, 426, 929, 1034, 1461
Hpy188III	TCNNGA	6 cut(s)	19, 374, 392, 1083, 1363, 1454
Hpy8I	GTNNAC	2 cut(s)	1093, 1158
Hpy99I	CGWCG	1 cut(s)	1637
HpyAV	CCTTC	7 cut(s)	37, 241, 469, 766, 1119, 1193, 1677
HpyCH4III	ACNGT	6 cut(s)	844, 1108, 1498, 1512, 1643, 1762
HpyCH4IV	ACGT	2 cut(s)	189, 323
HpyF3I	CTNAG	6 cut(s)	303, 390, 471, 819, 997, 1287
HpySE526I	ACGT	2 cut(s)	189, 323
Hsp92II	CATG	4 cut(s)	754, 1123, 1198, 1341
Ksp22I	TGATCA	1 cut(s)	1456
Kzo9I	GATC	4 cut(s)	307, 756, 1359, 1456
LmnI	GCTCC	1 cut(s)	43
Lsp1109I	GCAGC	2 cut(s)	650, 1399
LweI	GCATC	5 cut(s)	90, 417, 900, 1012, 1369
MaeI	CTAG	2 cut(s)	978, 1548
MaeII	ACGT	2 cut(s)	189, 323
MaeIII	GTNAC	4 cut(s)	625, 844, 1255, 1675
MalI	GATC	4 cut(s)	309, 758, 1361, 1458
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	4 cut(s)	307, 756, 1359, 1456
MfeI	CAATTG	1 cut(s)	341
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	382
MmeI	TCCRAC	1 cut(s)	952
MroXI	GAANNNNTTC	2 cut(s)	26, 381
MseI	TTAA	9 cut(s)	183, 482, 672, 725, 768, 960, 1113, 1271, 1721
MunI	CAATTG	1 cut(s)	341
Mva1269I	GAATGC	3 cut(s)	74, 138, 600
NdeI	CATATG	2 cut(s)	547, 1687
NdeII	GATC	4 cut(s)	307, 756, 1359, 1456
NlaIII	CATG	4 cut(s)	754, 1123, 1198, 1341
NlaIV	GGNNCC	4 cut(s)	88, 141, 356, 1267
NmuCI	GTSAC	3 cut(s)	625, 1255, 1675
NspI	RCATGY	1 cut(s)	1341
NspV	TTCGAA	1 cut(s)	589
PctI	GAATGC	3 cut(s)	74, 138, 600
PdmI	GAANNNNTTC	2 cut(s)	26, 381
PfeI	GAWTC	4 cut(s)	333, 370, 1239, 1436
PflFI	GACNNNGTC	1 cut(s)	1566
PkrI	GCNGC	2 cut(s)	665, 1414
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
PpuMI	RGGWCCY	1 cut(s)	1266
PshBI	ATTAAT	1 cut(s)	960
PsiI	TTATAA	2 cut(s)	434, 852
Psp1406I	AACGTT	1 cut(s)	323
Psp5II	RGGWCCY	1 cut(s)	1266
PspN4I	GGNNCC	4 cut(s)	88, 141, 356, 1267
PspPI	GGNCC	4 cut(s)	608, 1093, 1266, 1664
PspPPI	RGGWCCY	1 cut(s)	1266
PstI	CTGCAG	1 cut(s)	1445
PstNI	CAGNNNCTG	2 cut(s)	611, 1766
PsuI	RGATCY	1 cut(s)	307
PsyI	GACNNNGTC	1 cut(s)	1566
RsaI	GTAC	2 cut(s)	902, 1424
RsaNI	GTAC	2 cut(s)	901, 1423
SaqAI	TTAA	9 cut(s)	183, 482, 672, 725, 768, 960, 1113, 1271, 1721
SatI	GCNGC	2 cut(s)	664, 1413
Sau3AI	GATC	4 cut(s)	307, 756, 1359, 1456
Sau96I	GGNCC	4 cut(s)	608, 1093, 1266, 1664
SbfI	CCTGCAGG	1 cut(s)	1445
SchI	GAGTC	1 cut(s)	382
SdaI	CCTGCAGG	1 cut(s)	1445
SduI	GDGCHC	1 cut(s)	270
SfaNI	GCATC	5 cut(s)	90, 417, 900, 1012, 1369
SfcI	CTRYAG	3 cut(s)	81, 1441, 1497
SfuI	TTCGAA	1 cut(s)	589
SinI	GGWCC	3 cut(s)	1093, 1266, 1664
SmiI	ATTTAAAT	1 cut(s)	1722
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse8387I	CCTGCAGG	1 cut(s)	1445
SsiI	CCGC	2 cut(s)	36, 1042
SspI	AATATT	3 cut(s)	585, 651, 1057
SspMI	CTAG	2 cut(s)	978, 1548
SwaI	ATTTAAAT	1 cut(s)	1722
TaaI	ACNGT	6 cut(s)	844, 1108, 1498, 1512, 1643, 1762
TaiI	ACGT	2 cut(s)	192, 326
TaqI	TCGA	5 cut(s)	240, 589, 1102, 1659, 1746
TatI	WGTACW	1 cut(s)	900
TfiI	GAWTC	4 cut(s)	333, 370, 1239, 1436
Tru1I	TTAA	9 cut(s)	183, 482, 672, 725, 768, 960, 1113, 1271, 1721
Tru9I	TTAA	9 cut(s)	183, 482, 672, 725, 768, 960, 1113, 1271, 1721
TscAI	CASTG	3 cut(s)	270, 816, 1767
TseFI	GTSAC	3 cut(s)	625, 1255, 1675
TseI	GCWGC	2 cut(s)	663, 1412
Tsp45I	GTSAC	3 cut(s)	625, 1255, 1675
TspRI	CASTG	3 cut(s)	270, 816, 1767
Tth111I	GACNNNGTC	1 cut(s)	1566
VpaK11BI	GGWCC	3 cut(s)	1093, 1266, 1664
VspI	ATTAAT	1 cut(s)	960
XapI	RAATTY	3 cut(s)	76, 458, 1211
XceI	RCATGY	1 cut(s)	1341
XmiI	GTMKAC	1 cut(s)	1157
XmnI	GAANNNNTTC	2 cut(s)	26, 381
XspI	CTAG	2 cut(s)	978, 1548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.