Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007987

Physical Location & Seq

Genomic Coordinates Forward (+)

19607767 .. 19613999

Gene Structure 6233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G180100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1764 bp

ATGCCTCAAACGCTTTTCTTAAAGCCCTTCATTTCAGCTCCTTTGGATAATTGGAGTAAATTGAAAGCGTGCACAAATTCTATTGGTGCCAATGTCAAGGTGCGTGGAAGAGTGGGGGTAGTTTGTATGGGTATGCTGGCACCAAGAAAGTTCTTGCAGAAAAGGAAGAAAGTAGAAGTTTTCAAAGATGCTGCGGATGAAGCTGAGCAGAAGAACTGGAGGAGACTGATGAATGAAATTGAAGAGACAGGTTCTGCTGTTTCTGTGCTCAAAAGTGAAAGGCTCAAGGACAGGACTATTCCTAAGGATCTTGTACTTGGAACTTTGGTCAGATTCAAGCAACTGAAAAAATGGAACCTTGTCAGCCAGATTCTTGAATGGCTCCAAACTCAAAATTGGTGGGACTTCAGCAAAATGGATTTCCTGATGCTTATAACAGCTTATGGAAAGCAAGGGCACTTCAACGGGGCTGAGAAGGTTTTAAGTTTGATGAATGAGAAGGGAATTCCACCAAGTGTAATATCTCATACTGCTCTTATGGAAGCATATGGAAAAGGAGGCCGATATAACAATGCTGAAGCAATATTTAGAAGGATGCAGTCTTCTGGCCCTGAACCGTCTGCTGTGACTTATCAAATAATACTAAAAATATTTGTTGAGGGATGTAAGTTCAAGGAAGCAGAAGAAATTTTTGAGACCCTTTTGGATGAGGGAAAATCACCTTTGAAGCCAGACCAAAAGATGTTCCATATGATGATTTATATGTATAAGAAGGTCGGGAGTTATGATAAAGCTCGTAAGATGTTCGCATTGATGGCTGAGAGAGGGGTTCAGCAATCGACGGTTACTTATAATAGCTTAATGTCATTTGAAACTAATTACAAGGAAGTTTCAAAGATGTATAACCAGATGCAAAGAGCTGGTCTCCGACCTGACGTAGTGAGCTATGCCTTACTCATTAGTGCTTATGGGAAAGCTAGAAGAGAGGAAGAAGCCTTAGCTGTTTTTGAGGAGATGCTTGATGCTGGTGTCAGACCAACCTCGAAAGCTTATAACATTTTGCTTGACGCATTTGCAGTATCAGGAATGGTGGACCAAGCTCGAACTGTTTTTAAGAGCATGAGAAGGGACAGGTATAAACCTGATCTTTGCTCTTATACGACTATGTTATCAGCATATGTAAATGCATCTGATATGGAGGGTGCTGAAAAGTTTTTCTTAAGAATAAAACAAGATGCACTTAAACCCAATATCGTCACTTACGGAACCTTAATCAAAGGGTATGCTAAGACAAATAATATAGAGAAGATGATGGAGAAATATGAGGAAATGCAGGCAGCTGGTGTCAAACCAAATCAAACAATCTTAACGACAATCATGGATGCATATGGCAAGAACAGAGATTTTGGCAGTGCTGTTGTTTGGTACAAGGAAATGGAAACCTGTAGGCTTCCACCTGATCAGAAAGCAAAGAATATCCTTTTATCTTTGGCAAAAACAGCAGAAGAACAGAAGGTAGCTAACCAAGTTGTAGGGAATTTGGACCAGTGTAGCAATGAACAAGGAGGTACGAAGTTTTTGGTGCCTGTTGATGAGAATGATAGCGAGGATGAGGATGAGGACGATGACAACAATCATGATGATGAATTAGATGGTCCTTCACAGGTCACTTCATCATATGATGAACAAAAACATGAACTGATTTATTTAAATGGTGATAATGTGAAAAACCTTGACGGCTTACTTAAAGTGGCTGATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

588

Amino Acids

66.69

Weight (kDa)

6.98

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59040 AT3G59040
fragaria_vesca	FvH4_6g38970 FvH4_6g38970 FvH4_6g38970 FvH4_6g38970 FvH4_6g38970
malus_domestica	MD09G1145700.v1.1
prunus_persica	Prupe.3G180100_v2.0.a1
pyrus_communis	pycom09g06600
rosa_chinensis	RchiOBHm_Chr2g0152561
rosa_laevigata	RLG00000020646
rosa_multiflora	Rmu_co8487657.1_g000002 Rmu_sc0027676.1_g000001 Rmu_sc0027677.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095600
rosa_rugosa	Rorug02G0434500
rosa_samantha	Rh2AG495800 Rh2BG507600 Rh2CG482000 Rh2DG518900
rosa_wichuraiana	Rw0G004830 Rw2G040790 Rw2G041270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	434, 852, 1053
AccB1I	GGYRCC	3 cut(s)	86, 139, 1582
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	1 cut(s)	315
AcsI	RAATTY	4 cut(s)	76, 504, 687, 1537
AcuI	CTGAAG	2 cut(s)	391, 597
AdeI	CACNNNGTG	1 cut(s)	515
AfaI	GTAC	3 cut(s)	315, 1427, 1570
AflII	CTTAAG	1 cut(s)	1219
Alw21I	GWGCWC	2 cut(s)	74, 270
Alw26I	GTCTC	4 cut(s)	217, 239, 689, 929
Alw44I	GTGCAC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	315
AlwNI	CAGNNNCTG	1 cut(s)	254
AoxI	GGCC	2 cut(s)	559, 607
ApaLI	GTGCAC	1 cut(s)	70
ApeKI	GCWGC	2 cut(s)	191, 1337
ApoI	RAATTY	4 cut(s)	76, 504, 687, 1537
ArsI	GACNNNNNNTTYG	2 cut(s)	907, 939
AspS9I	GGNCC	4 cut(s)	608, 1093, 1543, 1655
AsuHPI	GGTGA	2 cut(s)	711, 1727
AvaII	GGWCC	3 cut(s)	1093, 1543, 1655
AxyI	CCTNAGG	1 cut(s)	303
BaeGI	GKGCMC	2 cut(s)	74, 459
BanI	GGYRCC	3 cut(s)	86, 139, 1582
BbsI	GAAGAC	1 cut(s)	594
Bbv12I	GWGCWC	2 cut(s)	74, 270
BbvI	GCAGC	2 cut(s)	178, 1349
BccI	CCATC	3 cut(s)	808, 1306, 1646
BceAI	ACGGC	1 cut(s)	1753
BclI	TGATCA	1 cut(s)	1459
BcoDI	GTCTC	4 cut(s)	217, 239, 689, 929
BfaI	CTAG	1 cut(s)	978
BfmI	CTRYAG	1 cut(s)	1444
BfrI	CTTAAG	1 cut(s)	1219
BisI	GCNGC	2 cut(s)	192, 1338
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	2 cut(s)	193, 1339
Bme18I	GGWCC	3 cut(s)	1093, 1543, 1655
BmgT120I	GGNCC	4 cut(s)	608, 1093, 1543, 1655
BmiI	GGNNCC	6 cut(s)	88, 141, 356, 383, 1267, 1584
BmsI	GCATC	9 cut(s)	178, 417, 585, 900, 1005, 1012, 1196, 1225, 1372
BpiI	GAAGAC	1 cut(s)	594
BplI	GAGNNNNNCTC	2 cut(s)	909, 941
BpmI	CTGGAG	1 cut(s)	238
Bpu10I	CCTNAGC	1 cut(s)	997
Bpu1102I	GCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	269
BsaI	GGTCTC	2 cut(s)	689, 929
Bse1I	ACTGG	2 cut(s)	221, 1546
Bse21I	CCTNAGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	1561
BseGI	GGATG	7 cut(s)	202, 600, 668, 712, 1387, 1615, 1621
BseMI	GCAATG	1 cut(s)	1561
BseMII	CTCAG	3 cut(s)	195, 462, 810
BseNI	ACTGG	2 cut(s)	221, 1546
BseRI	GAGGAG	2 cut(s)	235, 1025
BseSI	GKGCMC	2 cut(s)	74, 459
BseXI	GCAGC	2 cut(s)	178, 1349
BshFI	GGCC	2 cut(s)	561, 609
BshNI	GGYRCC	3 cut(s)	86, 139, 1582
BsiHKAI	GWGCWC	2 cut(s)	74, 270
BslFI	GGGAC	2 cut(s)	416, 1142
BsmAI	GTCTC	4 cut(s)	217, 239, 689, 929
BsmFI	GGGAC	2 cut(s)	416, 1142
BsnI	GGCC	2 cut(s)	561, 609
Bso31I	GGTCTC	2 cut(s)	689, 929
Bsp1286I	GDGCHC	3 cut(s)	74, 270, 459
Bsp143I	GATC	3 cut(s)	307, 1144, 1459
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	2 cut(s)	561, 609
BspCNI	CTCAG	3 cut(s)	196, 463, 811
BspHI	TCATGA	1 cut(s)	1636
BspLI	GGNNCC	6 cut(s)	88, 141, 356, 383, 1267, 1584
BspPI	GGATC	1 cut(s)	315
BspT107I	GGYRCC	3 cut(s)	86, 139, 1582
BspTI	CTTAAG	1 cut(s)	1219
BspTNI	GGTCTC	2 cut(s)	689, 929
BsrDI	GCAATG	1 cut(s)	1561
BsrI	ACTGG	2 cut(s)	221, 1546
BssMI	GATC	3 cut(s)	307, 1144, 1459
Bst4CI	ACNGT	3 cut(s)	618, 844, 1108
Bst6I	CTCTTC	3 cut(s)	103, 237, 976
BstAFI	CTTAAG	1 cut(s)	1219
BstC8I	GCNNGC	3 cut(s)	70, 138, 1335
BstDEI	CTNAG	6 cut(s)	204, 303, 471, 819, 997, 1287
BstF5I	GGATG	7 cut(s)	202, 600, 668, 712, 1387, 1615, 1621
BstKTI	GATC	3 cut(s)	310, 1147, 1462
BstMAI	GTCTC	4 cut(s)	217, 239, 689, 929
BstMBI	GATC	3 cut(s)	307, 1144, 1459
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 200, 815, 1499
BstSFI	CTRYAG	1 cut(s)	1444
BstSLI	GKGCMC	2 cut(s)	74, 459
BstV1I	GCAGC	2 cut(s)	178, 1349
BstV2I	GAAGAC	1 cut(s)	594
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	561, 609
BtsCI	GGATG	7 cut(s)	202, 600, 668, 712, 1387, 1615, 1621
BtsI	GCAGTG	1 cut(s)	1417
BtsIMutI	CAGTG	2 cut(s)	1417, 1553
Cac8I	GCNNGC	3 cut(s)	70, 138, 1335
CaiI	CAGNNNCTG	1 cut(s)	254
CciI	TCATGA	1 cut(s)	1636
Cfr13I	GGNCC	4 cut(s)	608, 1093, 1543, 1655
CseI	GACGC	1 cut(s)	1076
Csp6I	GTAC	3 cut(s)	314, 1426, 1569
CspCI	CAANNNNNGTGG	4 cut(s)	85, 120, 380, 415
CviAII	CATG	4 cut(s)	1120, 1378, 1637, 1694
CviQI	GTAC	3 cut(s)	314, 1426, 1569
DdeI	CTNAG	6 cut(s)	204, 303, 471, 819, 997, 1287
DpnI	GATC	3 cut(s)	309, 1146, 1461
DpnII	GATC	3 cut(s)	307, 1144, 1459
DraI	TTTAAA	1 cut(s)	1710
DraIII	CACNNNGTG	1 cut(s)	515
Eam1104I	CTCTTC	3 cut(s)	103, 237, 976
EarI	CTCTTC	3 cut(s)	103, 237, 976
Eco31I	GGTCTC	2 cut(s)	689, 929
Eco47I	GGWCC	3 cut(s)	1093, 1543, 1655
Eco57I	CTGAAG	2 cut(s)	391, 597
Eco81I	CCTNAGG	1 cut(s)	303
EcoRI	GAATTC	1 cut(s)	504
EcoT22I	ATGCAT	2 cut(s)	1189, 1387
FaeI	CATG	4 cut(s)	1123, 1381, 1640, 1697
FalI	AAGNNNNNCTT	4 cut(s)	1202, 1234, 1224, 1256
FaqI	GGGAC	2 cut(s)	416, 1142
FatI	CATG	4 cut(s)	1119, 1377, 1636, 1693
FauNDI	CATATG	5 cut(s)	547, 750, 1177, 1387, 1678
FbaI	TGATCA	1 cut(s)	1459
Fnu4HI	GCNGC	2 cut(s)	192, 1338
FokI	GGATG	7 cut(s)	209, 607, 675, 719, 1394, 1622, 1628
Fsp4HI	GCNGC	2 cut(s)	192, 1338
FspBI	CTAG	1 cut(s)	978
GluI	GCNGC	2 cut(s)	192, 1338
GsuI	CTGGAG	1 cut(s)	238
HaeIII	GGCC	2 cut(s)	561, 609
HgaI	GACGC	1 cut(s)	1076
Hin1II	CATG	4 cut(s)	1123, 1381, 1640, 1697
HindIII	AAGCTT	1 cut(s)	1047
HinfI	GANTC	2 cut(s)	333, 370
HphI	GGTGA	2 cut(s)	711, 1727
Hpy166II	GTNNAC	2 cut(s)	72, 1093
Hpy188I	TCNGA	5 cut(s)	332, 929, 1034, 1192, 1464
Hpy188III	TCNNGA	5 cut(s)	374, 424, 778, 1083, 1637
Hpy8I	GTNNAC	2 cut(s)	72, 1093
Hpy99I	CGWCG	1 cut(s)	844
HpyAV	CCTTC	8 cut(s)	37, 469, 493, 585, 766, 1119, 1507, 1668
HpyCH4III	ACNGT	3 cut(s)	618, 844, 1108
HpyCH4IV	ACGT	1 cut(s)	936
HpyCH4V	TGCA	9 cut(s)	72, 157, 598, 913, 1076, 1187, 1238, 1333, 1385
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 200, 815, 1499
HpyF3I	CTNAG	6 cut(s)	204, 303, 471, 819, 997, 1287
HpySE526I	ACGT	1 cut(s)	936
Hsp92II	CATG	4 cut(s)	1123, 1381, 1640, 1697
Ksp22I	TGATCA	1 cut(s)	1459
Kzo9I	GATC	3 cut(s)	307, 1144, 1459
LmnI	GCTCC	2 cut(s)	43, 387
Lsp1109I	GCAGC	2 cut(s)	178, 1349
LweI	GCATC	9 cut(s)	178, 417, 585, 900, 1005, 1012, 1196, 1225, 1372
MaeI	CTAG	1 cut(s)	978
MaeII	ACGT	1 cut(s)	936
MaeIII	GTNAC	4 cut(s)	625, 844, 1255, 1666
MalI	GATC	3 cut(s)	309, 1146, 1461
MboI	GATC	3 cut(s)	307, 1144, 1459
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	3 cut(s)	74, 270, 459
MmeI	TCCRAC	1 cut(s)	952
Mph1103I	ATGCAT	2 cut(s)	1189, 1387
MslI	CAYNNNNRTG	1 cut(s)	1641
MspA1I	CMGCKG	1 cut(s)	1340
MspCI	CTTAAG	1 cut(s)	1219
MwoI	GCNNNNNNNGC	4 cut(s)	10, 200, 815, 1499
NdeI	CATATG	5 cut(s)	547, 750, 1177, 1387, 1678
NdeII	GATC	3 cut(s)	307, 1144, 1459
NlaIII	CATG	4 cut(s)	1123, 1381, 1640, 1697
NlaIV	GGNNCC	6 cut(s)	88, 141, 356, 383, 1267, 1584
NmuCI	GTSAC	3 cut(s)	625, 1255, 1666
NsiI	ATGCAT	2 cut(s)	1189, 1387
PagI	TCATGA	1 cut(s)	1636
PfeI	GAWTC	2 cut(s)	333, 370
PkrI	GCNGC	2 cut(s)	193, 1339
PsiI	TTATAA	3 cut(s)	434, 852, 1053
PspN4I	GGNNCC	6 cut(s)	88, 141, 356, 383, 1267, 1584
PspPI	GGNCC	4 cut(s)	608, 1093, 1543, 1655
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	307
PvuII	CAGCTG	1 cut(s)	1340
RsaI	GTAC	3 cut(s)	315, 1427, 1570
RsaNI	GTAC	3 cut(s)	314, 1426, 1569
RseI	CAYNNNNRTG	1 cut(s)	1641
SatI	GCNGC	2 cut(s)	192, 1338
Sau3AI	GATC	3 cut(s)	307, 1144, 1459
Sau96I	GGNCC	4 cut(s)	608, 1093, 1543, 1655
SduI	GDGCHC	3 cut(s)	74, 270, 459
SfaNI	GCATC	9 cut(s)	178, 417, 585, 900, 1005, 1012, 1196, 1225, 1372
SfcI	CTRYAG	1 cut(s)	1444
SinI	GGWCC	3 cut(s)	1093, 1543, 1655
SmiI	ATTTAAAT	1 cut(s)	1710
SmiMI	CAYNNNNRTG	1 cut(s)	1641
SmlI	CTYRAG	2 cut(s)	284, 1219
SmoI	CTYRAG	2 cut(s)	284, 1219
SsiI	CCGC	1 cut(s)	194
SspI	AATATT	2 cut(s)	585, 651
SspMI	CTAG	1 cut(s)	978
SwaI	ATTTAAAT	1 cut(s)	1710
TaaI	ACNGT	3 cut(s)	618, 844, 1108
TaiI	ACGT	1 cut(s)	939
TaqI	TCGA	3 cut(s)	839, 1043, 1102
TatI	WGTACW	1 cut(s)	313
TfiI	GAWTC	2 cut(s)	333, 370
TscAI	CASTG	2 cut(s)	1417, 1553
TseFI	GTSAC	3 cut(s)	625, 1255, 1666
TseI	GCWGC	2 cut(s)	191, 1337
Tsp45I	GTSAC	3 cut(s)	625, 1255, 1666
TspGWI	ACGGA	1 cut(s)	1278
TspRI	CASTG	2 cut(s)	1417, 1553
Vha464I	CTTAAG	1 cut(s)	1219
VneI	GTGCAC	1 cut(s)	70
VpaK11BI	GGWCC	3 cut(s)	1093, 1543, 1655
XapI	RAATTY	4 cut(s)	76, 504, 687, 1537
XspI	CTAG	1 cut(s)	978
Zsp2I	ATGCAT	2 cut(s)	1189, 1387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.