Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G59040 AT3G59040 |
| fragaria_vesca | FvH4_6g38970 FvH4_6g38970 FvH4_6g38970 FvH4_6g38970 FvH4_6g38970 |
| malus_domestica | MD09G1145700.v1.1 |
| prunus_persica | Prupe.3G180100_v2.0.a1 |
| pyrus_communis | pycom09g06600 |
| rosa_chinensis | RchiOBHm_Chr2g0152561 |
| rosa_laevigata | RLG00000020646 |
| rosa_multiflora | Rmu_co8487657.1_g000002 Rmu_sc0027676.1_g000001 Rmu_sc0027677.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00095600 |
| rosa_rugosa | Rorug02G0434500 |
| rosa_samantha | Rh2AG495800 Rh2BG507600 Rh2CG482000 Rh2DG518900 |
| rosa_wichuraiana | Rw0G004830 Rw2G040790 Rw2G041270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 437, 855, 1056 |
| Acc65I | GGTACC | 1 cut(s) | 1428 |
| AccB1I | GGYRCC | 4 cut(s) | 142, 1205, 1428, 1585 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1438 |
| AciI | CCGC | 3 cut(s) | 1045, 1457, 1679 |
| AclWI | GGATC | 2 cut(s) | 1554, 1576 |
| AcsI | RAATTY | 2 cut(s) | 1214, 1540 |
| AcuI | CTGAAG | 3 cut(s) | 394, 600, 705 |
| AdeI | CACNNNGTG | 1 cut(s) | 518 |
| AfaI | GTAC | 1 cut(s) | 1430 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1438 |
| AflII | CTTAAG | 1 cut(s) | 19 |
| AgsI | TTSAA | 4 cut(s) | 67, 187, 676, 875 |
| AjnI | CCWGG | 1 cut(s) | 1431 |
| Alw21I | GWGCWC | 2 cut(s) | 273, 1157 |
| Alw26I | GTCTC | 5 cut(s) | 220, 242, 692, 898, 932 |
| AlwI | GGATC | 2 cut(s) | 1554, 1576 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 257, 266 |
| AoxI | GGCC | 3 cut(s) | 23, 562, 610 |
| ApeKI | GCWGC | 3 cut(s) | 194, 1745, 1748 |
| ApoI | RAATTY | 2 cut(s) | 1214, 1540 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 910, 942 |
| AseI | ATTAAT | 1 cut(s) | 1274 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 806, 1217 |
| Asp718I | GGTACC | 1 cut(s) | 1428 |
| AspS9I | GGNCC | 4 cut(s) | 24, 611, 1096, 1652 |
| AsuHPI | GGTGA | 1 cut(s) | 714 |
| AvaII | GGWCC | 2 cut(s) | 1096, 1652 |
| BaeGI | GKGCMC | 1 cut(s) | 462 |
| BanI | GGYRCC | 4 cut(s) | 142, 1205, 1428, 1585 |
| BauI | CACGAG | 1 cut(s) | 466 |
| BbsI | GAAGAC | 1 cut(s) | 597 |
| Bbv12I | GWGCWC | 2 cut(s) | 273, 1157 |
| BbvI | GCAGC | 3 cut(s) | 181, 1735, 1757 |
| BccI | CCATC | 3 cut(s) | 628, 1309, 1643 |
| BciT130I | CCWGG | 1 cut(s) | 1433 |
| BclI | TGATCA | 1 cut(s) | 1462 |
| BcoDI | GTCTC | 5 cut(s) | 220, 242, 692, 898, 932 |
| BfaI | CTAG | 3 cut(s) | 362, 981, 1572 |
| BfmI | CTRYAG | 4 cut(s) | 84, 258, 1447, 1749 |
| BfrI | CTTAAG | 1 cut(s) | 19 |
| BisI | GCNGC | 3 cut(s) | 195, 1746, 1749 |
| BlsI | GCNGC | 3 cut(s) | 196, 1747, 1750 |
| Bme1390I | CCNGG | 1 cut(s) | 1433 |
| Bme18I | GGWCC | 2 cut(s) | 1096, 1652 |
| BmgT120I | GGNCC | 4 cut(s) | 24, 611, 1096, 1652 |
| BmiI | GGNNCC | 8 cut(s) | 91, 144, 359, 386, 834, 1207, 1430, 1587 |
| BmrFI | CCNGG | 1 cut(s) | 1433 |
| BpiI | GAAGAC | 1 cut(s) | 597 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 912, 944 |
| BpmI | CTGGAG | 1 cut(s) | 241 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1000 |
| BpuEI | CTTGAG | 2 cut(s) | 272, 1751 |
| BsaI | GGTCTC | 1 cut(s) | 932 |
| BsaJI | CCNNGG | 2 cut(s) | 306, 319 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1438 |
| Bse1I | ACTGG | 4 cut(s) | 224, 404, 1665, 1701 |
| Bse3DI | GCAATG | 2 cut(s) | 819, 1564 |
| BseBI | CCWGG | 1 cut(s) | 1433 |
| BseDI | CCNNGG | 2 cut(s) | 306, 319 |
| BseGI | GGATG | 8 cut(s) | 316, 508, 603, 671, 1390, 1618, 1624, 1630 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1438 |
| BseMI | GCAATG | 2 cut(s) | 819, 1564 |
| BseMII | CTCAG | 3 cut(s) | 407, 465, 813 |
| BseNI | ACTGG | 4 cut(s) | 224, 404, 1665, 1701 |
| BseRI | GAGGAG | 3 cut(s) | 238, 260, 1028 |
| BseSI | GKGCMC | 1 cut(s) | 462 |
| BseXI | GCAGC | 3 cut(s) | 181, 1735, 1757 |
| BseYI | CCCAGC | 1 cut(s) | 779 |
| BshFI | GGCC | 3 cut(s) | 25, 564, 612 |
| BshNI | GGYRCC | 4 cut(s) | 142, 1205, 1428, 1585 |
| BsiHKAI | GWGCWC | 2 cut(s) | 273, 1157 |
| BslFI | GGGAC | 3 cut(s) | 419, 1145, 1282 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1438 |
| BsmAI | GTCTC | 5 cut(s) | 220, 242, 692, 898, 932 |
| BsmFI | GGGAC | 3 cut(s) | 419, 1145, 1282 |
| BsmI | GAATGC | 1 cut(s) | 77 |
| BsnI | GGCC | 3 cut(s) | 25, 564, 612 |
| Bso31I | GGTCTC | 1 cut(s) | 932 |
| Bsp1286I | GDGCHC | 3 cut(s) | 273, 462, 1157 |
| Bsp143I | GATC | 4 cut(s) | 1147, 1462, 1546, 1568 |
| BspACI | CCGC | 3 cut(s) | 1045, 1457, 1679 |
| BspANI | GGCC | 3 cut(s) | 25, 564, 612 |
| BspCNI | CTCAG | 3 cut(s) | 406, 466, 814 |
| BspLI | GGNNCC | 8 cut(s) | 91, 144, 359, 386, 834, 1207, 1430, 1587 |
| BspMAI | CTGCAG | 2 cut(s) | 262, 1753 |
| BspPI | GGATC | 2 cut(s) | 1554, 1576 |
| BspT107I | GGYRCC | 4 cut(s) | 142, 1205, 1428, 1585 |
| BspTI | CTTAAG | 1 cut(s) | 19 |
| BspTNI | GGTCTC | 1 cut(s) | 932 |
| BsrDI | GCAATG | 2 cut(s) | 819, 1564 |
| BsrI | ACTGG | 4 cut(s) | 224, 404, 1665, 1701 |
| BssECI | CCNNGG | 2 cut(s) | 306, 319 |
| BssMI | GATC | 4 cut(s) | 1147, 1462, 1546, 1568 |
| BssSI | CACGAG | 1 cut(s) | 466 |
| BssT1I | CCWWGG | 2 cut(s) | 306, 319 |
| Bst2BI | CACGAG | 1 cut(s) | 466 |
| Bst2UI | CCWGG | 1 cut(s) | 1433 |
| Bst4CI | ACNGT | 3 cut(s) | 847, 1111, 1712 |
| Bst6I | CTCTTC | 3 cut(s) | 106, 708, 979 |
| BstAFI | CTTAAG | 1 cut(s) | 19 |
| BstC8I | GCNNGC | 3 cut(s) | 137, 141, 1338 |
| BstDEI | CTNAG | 5 cut(s) | 393, 474, 822, 1000, 1290 |
| BstF5I | GGATG | 8 cut(s) | 316, 508, 603, 671, 1390, 1618, 1624, 1630 |
| BstKTI | GATC | 4 cut(s) | 1150, 1465, 1549, 1571 |
| BstMAI | GTCTC | 5 cut(s) | 220, 242, 692, 898, 932 |
| BstMBI | GATC | 4 cut(s) | 1147, 1462, 1546, 1568 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 203, 1502 |
| BstNI | CCWGG | 1 cut(s) | 1433 |
| BstNSI | RCATGY | 1 cut(s) | 139 |
| BstSCI | CCNGG | 1 cut(s) | 1431 |
| BstSFI | CTRYAG | 4 cut(s) | 84, 258, 1447, 1749 |
| BstSLI | GKGCMC | 1 cut(s) | 462 |
| BstV1I | GCAGC | 3 cut(s) | 181, 1735, 1757 |
| BstV2I | GAAGAC | 1 cut(s) | 597 |
| BstX2I | RGATCY | 1 cut(s) | 1568 |
| BstYI | RGATCY | 1 cut(s) | 1568 |
| BsuRI | GGCC | 3 cut(s) | 25, 564, 612 |
| BtsCI | GGATG | 8 cut(s) | 316, 508, 603, 671, 1390, 1618, 1624, 1630 |
| BtsI | GCAGTG | 1 cut(s) | 1420 |
| BtsIMutI | CAGTG | 2 cut(s) | 1420, 1658 |
| Cac8I | GCNNGC | 3 cut(s) | 137, 141, 1338 |
| CaiI | CAGNNNCTG | 2 cut(s) | 257, 266 |
| Cfr13I | GGNCC | 4 cut(s) | 24, 611, 1096, 1652 |
| CseI | GACGC | 1 cut(s) | 1079 |
| Csp6I | GTAC | 1 cut(s) | 1429 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 88, 123 |
| CviAII | CATG | 6 cut(s) | 136, 754, 1123, 1198, 1381, 1691 |
| CviQI | GTAC | 1 cut(s) | 1429 |
| DdeI | CTNAG | 5 cut(s) | 393, 474, 822, 1000, 1290 |
| DpnI | GATC | 4 cut(s) | 1149, 1464, 1548, 1570 |
| DpnII | GATC | 4 cut(s) | 1147, 1462, 1546, 1568 |
| DraI | TTTAAA | 3 cut(s) | 729, 1117, 1246 |
| DraIII | CACNNNGTG | 1 cut(s) | 518 |
| Eam1104I | CTCTTC | 3 cut(s) | 106, 708, 979 |
| EarI | CTCTTC | 3 cut(s) | 106, 708, 979 |
| EciI | GGCGGA | 1 cut(s) | 1446 |
| Eco130I | CCWWGG | 2 cut(s) | 306, 319 |
| Eco31I | GGTCTC | 1 cut(s) | 932 |
| Eco47I | GGWCC | 2 cut(s) | 1096, 1652 |
| Eco57I | CTGAAG | 3 cut(s) | 394, 600, 705 |
| EcoO109I | RGGNCCY | 1 cut(s) | 24 |
| EcoRII | CCWGG | 1 cut(s) | 1431 |
| EcoT14I | CCWWGG | 2 cut(s) | 306, 319 |
| EcoT22I | ATGCAT | 3 cut(s) | 1192, 1243, 1390 |
| ErhI | CCWWGG | 2 cut(s) | 306, 319 |
| FaeI | CATG | 6 cut(s) | 139, 757, 1126, 1201, 1384, 1694 |
| FaqI | GGGAC | 3 cut(s) | 419, 1145, 1282 |
| FatI | CATG | 6 cut(s) | 135, 753, 1122, 1197, 1380, 1690 |
| FauI | CCCGC | 1 cut(s) | 1052 |
| FauNDI | CATATG | 3 cut(s) | 550, 1180, 1390 |
| FbaI | TGATCA | 1 cut(s) | 1462 |
| Fnu4HI | GCNGC | 3 cut(s) | 195, 1746, 1749 |
| FokI | GGATG | 8 cut(s) | 323, 495, 610, 678, 1397, 1625, 1631, 1637 |
| Fsp4HI | GCNGC | 3 cut(s) | 195, 1746, 1749 |
| FspBI | CTAG | 3 cut(s) | 362, 981, 1572 |
| GluI | GCNGC | 3 cut(s) | 195, 1746, 1749 |
| GsaI | CCCAGC | 1 cut(s) | 783 |
| GsuI | CTGGAG | 1 cut(s) | 241 |
| HaeIII | GGCC | 3 cut(s) | 25, 564, 612 |
| HgaI | GACGC | 1 cut(s) | 1079 |
| Hin1II | CATG | 6 cut(s) | 139, 757, 1126, 1201, 1384, 1694 |
| HindIII | AAGCTT | 2 cut(s) | 479, 1050 |
| HinfI | GANTC | 3 cut(s) | 373, 700, 1442 |
| HphI | GGTGA | 1 cut(s) | 714 |
| Hpy166II | GTNNAC | 1 cut(s) | 1096 |
| Hpy188I | TCNGA | 8 cut(s) | 396, 801, 823, 932, 1037, 1195, 1467, 1551 |
| Hpy188III | TCNNGA | 7 cut(s) | 377, 427, 734, 1086, 1145, 1306, 1369 |
| Hpy8I | GTNNAC | 1 cut(s) | 1096 |
| Hpy99I | CGWCG | 1 cut(s) | 847 |
| HpyAV | CCTTC | 6 cut(s) | 166, 588, 769, 1122, 1510, 1665 |
| HpyCH4III | ACNGT | 3 cut(s) | 847, 1111, 1712 |
| HpyCH4IV | ACGT | 1 cut(s) | 939 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 203, 1502 |
| HpyF3I | CTNAG | 5 cut(s) | 393, 474, 822, 1000, 1290 |
| HpySE526I | ACGT | 1 cut(s) | 939 |
| Hsp92II | CATG | 6 cut(s) | 139, 757, 1126, 1201, 1384, 1694 |
| KpnI | GGTACC | 1 cut(s) | 1432 |
| Ksp22I | TGATCA | 1 cut(s) | 1462 |
| Kzo9I | GATC | 4 cut(s) | 1147, 1462, 1546, 1568 |
| LmnI | GCTCC | 4 cut(s) | 46, 390, 783, 1681 |
| Lsp1109I | GCAGC | 3 cut(s) | 181, 1735, 1757 |
| MaeI | CTAG | 3 cut(s) | 362, 981, 1572 |
| MaeII | ACGT | 1 cut(s) | 939 |
| MaeIII | GTNAC | 4 cut(s) | 628, 847, 1258, 1663 |
| MalI | GATC | 4 cut(s) | 1149, 1464, 1548, 1570 |
| MboI | GATC | 4 cut(s) | 1147, 1462, 1546, 1568 |
| MflI | RGATCY | 1 cut(s) | 1568 |
| MhlI | GDGCHC | 3 cut(s) | 273, 462, 1157 |
| MluCI | AATT | 7 cut(s) | 52, 62, 240, 880, 1214, 1540, 1643 |
| MlyI | GAGTC | 1 cut(s) | 694 |
| MmeI | TCCRAC | 1 cut(s) | 955 |
| Mph1103I | ATGCAT | 3 cut(s) | 1192, 1243, 1390 |
| MroXI | GAANNNNTTC | 2 cut(s) | 806, 1217 |
| MseI | TTAA | 8 cut(s) | 20, 339, 485, 728, 1116, 1140, 1245, 1274 |
| MspA1I | CMGCKG | 1 cut(s) | 1748 |
| MspCI | CTTAAG | 1 cut(s) | 19 |
| MspR9I | CCNGG | 1 cut(s) | 1433 |
| Mva1269I | GAATGC | 1 cut(s) | 77 |
| MvaI | CCWGG | 1 cut(s) | 1433 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 203, 1502 |
| NdeI | CATATG | 3 cut(s) | 550, 1180, 1390 |
| NdeII | GATC | 4 cut(s) | 1147, 1462, 1546, 1568 |
| NlaIII | CATG | 6 cut(s) | 139, 757, 1126, 1201, 1384, 1694 |
| NlaIV | GGNNCC | 8 cut(s) | 91, 144, 359, 386, 834, 1207, 1430, 1587 |
| NmeAIII | GCCGAG | 2 cut(s) | 232, 1234 |
| NmuCI | GTSAC | 3 cut(s) | 628, 1258, 1663 |
| NsiI | ATGCAT | 3 cut(s) | 1192, 1243, 1390 |
| NspI | RCATGY | 1 cut(s) | 139 |
| PaeI | GCATGC | 1 cut(s) | 139 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1716 |
| PctI | GAATGC | 1 cut(s) | 77 |
| PdmI | GAANNNNTTC | 2 cut(s) | 806, 1217 |
| PfeI | GAWTC | 2 cut(s) | 373, 1442 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1438 |
| PkrI | GCNGC | 3 cut(s) | 196, 1747, 1750 |
| PleI | GAGTC | 1 cut(s) | 694 |
| PpsI | GAGTC | 1 cut(s) | 694 |
| PshBI | ATTAAT | 1 cut(s) | 1274 |
| PsiI | TTATAA | 3 cut(s) | 437, 855, 1056 |
| Psp6I | CCWGG | 1 cut(s) | 1431 |
| PspFI | CCCAGC | 1 cut(s) | 779 |
| PspGI | CCWGG | 1 cut(s) | 1431 |
| PspN4I | GGNNCC | 8 cut(s) | 91, 144, 359, 386, 834, 1207, 1430, 1587 |
| PspPI | GGNCC | 4 cut(s) | 24, 611, 1096, 1652 |
| PstI | CTGCAG | 2 cut(s) | 262, 1753 |
| PstNI | CAGNNNCTG | 2 cut(s) | 257, 266 |
| PsuI | RGATCY | 1 cut(s) | 1568 |
| PvuII | CAGCTG | 1 cut(s) | 1748 |
| RsaI | GTAC | 1 cut(s) | 1430 |
| RsaNI | GTAC | 1 cut(s) | 1429 |
| SaqAI | TTAA | 8 cut(s) | 20, 339, 485, 728, 1116, 1140, 1245, 1274 |
| SatI | GCNGC | 3 cut(s) | 195, 1746, 1749 |
| Sau3AI | GATC | 4 cut(s) | 1147, 1462, 1546, 1568 |
| Sau96I | GGNCC | 4 cut(s) | 24, 611, 1096, 1652 |
| SchI | GAGTC | 1 cut(s) | 694 |
| ScrFI | CCNGG | 1 cut(s) | 1433 |
| SduI | GDGCHC | 3 cut(s) | 273, 462, 1157 |
| SfcI | CTRYAG | 4 cut(s) | 84, 258, 1447, 1749 |
| SinI | GGWCC | 2 cut(s) | 1096, 1652 |
| SmlI | CTYRAG | 3 cut(s) | 19, 287, 1730 |
| SmoI | CTYRAG | 3 cut(s) | 19, 287, 1730 |
| SphI | GCATGC | 1 cut(s) | 139 |
| Sse9I | AATT | 7 cut(s) | 52, 62, 240, 880, 1214, 1540, 1643 |
| SsiI | CCGC | 3 cut(s) | 1045, 1457, 1679 |
| SspI | AATATT | 2 cut(s) | 588, 693 |
| SspMI | CTAG | 3 cut(s) | 362, 981, 1572 |
| StyD4I | CCNGG | 1 cut(s) | 1431 |
| StyI | CCWWGG | 2 cut(s) | 306, 319 |
| TaaI | ACNGT | 3 cut(s) | 847, 1111, 1712 |
| TaiI | ACGT | 1 cut(s) | 942 |
| TaqI | TCGA | 4 cut(s) | 378, 842, 1105, 1305 |
| TasI | AATT | 7 cut(s) | 52, 62, 240, 880, 1214, 1540, 1643 |
| TfiI | GAWTC | 2 cut(s) | 373, 1442 |
| Tru1I | TTAA | 8 cut(s) | 20, 339, 485, 728, 1116, 1140, 1245, 1274 |
| Tru9I | TTAA | 8 cut(s) | 20, 339, 485, 728, 1116, 1140, 1245, 1274 |
| TscAI | CASTG | 2 cut(s) | 1420, 1665 |
| TseFI | GTSAC | 3 cut(s) | 628, 1258, 1663 |
| TseI | GCWGC | 3 cut(s) | 194, 1745, 1748 |
| Tsp45I | GTSAC | 3 cut(s) | 628, 1258, 1663 |
| TspRI | CASTG | 2 cut(s) | 1420, 1665 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1438 |
| Vha464I | CTTAAG | 1 cut(s) | 19 |
| VpaK11BI | GGWCC | 2 cut(s) | 1096, 1652 |
| VspI | ATTAAT | 1 cut(s) | 1274 |
| XapI | RAATTY | 2 cut(s) | 1214, 1540 |
| XceI | RCATGY | 1 cut(s) | 139 |
| XmnI | GAANNNNTTC | 2 cut(s) | 806, 1217 |
| XspI | CTAG | 3 cut(s) | 362, 981, 1572 |
| Zsp2I | ATGCAT | 3 cut(s) | 1192, 1243, 1390 |