Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0007987

Physical Location & Seq

Genomic Coordinates Reverse (-)

11343099 .. 11348049

Gene Structure 4951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1145700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1779 bp

ATGCCTCAAACCCTTTTCTTAAAGCCCTTTATTTCATCAGCTCCTTTGGATAATTGGAGTAGATTGAAAGAATGCACAAATTCTATAGGTTCCAATGTCAGGGTGCGTGGAAGAGTGGGGGTTGTTTGTATGGGCATGCTGGCACCAAGAAAATTCTTGCAGAAAAGGAAGAAGGTAGAAGTTTTCAAAGATGCTGCTGATGAAGCCGAGCAGAAGAACTGGAGGAGACTTATGAATGAAATTGAGGAGACAGGTTCTGCAGTTTCTGTGCTCAAAAGTGAAAAGCTCAAGGACAAGACTATTCCCAAGGATGTTGTCCTTGGAACTTTGGTTAGATTTAAGCAACTGAAAAAATGGAACCTAGTCAGCCAGATTCTCGAATGGCTTCAGACTCAGAACTGGTGGGACTTCAGCAAAATGGATTTCCTGATGCTTATAACAGCTTATGGAAAGCAAGGGCACTACACGAGGGCTGAGAAGCTTTTAAGTTTGATGAATGAGAAAGGCTATCCACCAAGTGTAATATCTCATACTGCTCTTATGGAAGCATATGGAAAAGGAGGCCGATATAACAATGCTGAAGCAATATTTAGAAGGATGCAGTCTTCTGGCCCTGAACCGTCTGCTGTGACATATCAAATAATACTAAAGATATTTGTTGAGGGATGTAAGTTCAAGGAAGCTGAAGAAATATTTGAGACTCTTTTAAATGAGGAAAAATCACCTTTAAAGCCAGACCAAAAGATGTTCCACATGATGATTTATATGTATAAGAAGGCTGGGAGCTATGATAAAGCTCGGAAGATGTTCTCAGTGATGTCTGAGAGAGGGGTTCCACAATCGACGGTTACTTATAATAGCTTGATGTCTTTTGAAAATAATTACAAGGAAGTCTCCAAGATGTATAACCAGATGCAAAGAGCTGGTCTCCGACCCGATGTAGTGAGTTATGCCTTACTCATTAGTGCTTATGGGAAAGCTAGAAGAGAGGAAGAAGCCTTAGCTGTTTTTGAGGAGATGCTTGATGCTGGTGTCAGACCAACCCGCAAAGCTTATAACATTTTGCTTGACGCATTTGCAGTATCAGGAATGGTGGACCAAGCTCGAACAGTTTTTAAAAGCATGAGAAGGGACAGGTTTAATCCTGATCTGTGCTCTTATACGACGATGCTGTCAGCATATGTAAATGCATCTGACATGGAGGGTGCTGAGAAATTCTTCATAAGAATAAAACAAGATGCATTTAAACCCAATGTCGTCACTTATGGGACATTAATCAAAGGGTATGCTAAGACAAGTAATATCGAGAAGATGATGGAGAAATATGAGGAAATGCAGGCATCTGGTATCAAACCAAATCAAACAATCTTGACAACAATCATGGATGCATATGGAAAAAACAGAGATTTTGGCAGTGCTGTTGTTTGGTACCAGGAAATGGAATCCTGTAGGCTTCCGCCTGATCAGAAAGCAAAGAATATCCTTTTGTCTTTGGCAAAAACAGCAGAGGAACAGAAGGTGGCTAACCAACTTGTAGGAAATCTGGATCAGAGTAGCAATGAACAAGGATCTGGTAAGTATCCGGTGCCTACCGATGAGAATGATAGTGAGGATGAGGACGAGGATGAGGATGAGGATGAGGATGAAAAGTATGATGATGAATTAGATGGTCCTTCACTGGTCACTTCATCAAATGCTGAGCAAAAACATGAACTGGTTTATCTCAACGGTGTTAACGAGAAAAACCTTGAGGGCTTACTTGCAGTTGCAGATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

593

Amino Acids

67.48

Weight (kDa)

5.82

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	144 - 185	4e-06	PPR repeat family
PPR_2	PF13041	172 - 218	2.5e-08	PPR repeat family
PPR_3	PF13812	172 - 220	3.2e-06	Pentatricopeptide repeat domain
PPR_long	PF17177	244 - 365	1e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	245 - 289	2.4e-06	PPR repeat family
PPR_3	PF13812	303 - 359	6.7e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	309 - 340	2.4e-06	PPR repeat
PPR_2	PF13041	312 - 360	8.7e-12	PPR repeat family
PPR	PF01535	315 - 345	2.2e-06	PPR repeat
PPR_2	PF13041	351 - 395	6.4e-09	PPR repeat family
TPR_24	PF23276	359 - 480	6.3e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	365 - 463	1.8e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	371 - 429	1.5e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	382 - 431	3.1e-12	PPR repeat family
PPR_3	PF13812	411 - 467	8.8e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	417 - 454	1.1e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59040 AT3G59040
fragaria_vesca	FvH4_6g38970 FvH4_6g38970 FvH4_6g38970 FvH4_6g38970 FvH4_6g38970
malus_domestica	MD09G1145700.v1.1
prunus_persica	Prupe.3G180100_v2.0.a1
pyrus_communis	pycom09g06600
rosa_chinensis	RchiOBHm_Chr2g0152561
rosa_laevigata	RLG00000020646
rosa_multiflora	Rmu_co8487657.1_g000002 Rmu_sc0027676.1_g000001 Rmu_sc0027677.1_g000001
rosa_roxburghii	Rroxscaffold_2G00095600
rosa_rugosa	Rorug02G0434500
rosa_samantha	Rh2AG495800 Rh2BG507600 Rh2CG482000 Rh2DG518900
rosa_wichuraiana	Rw0G004830 Rw2G040790 Rw2G041270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	437, 855, 1056
AasI	GACNNNNNNGTC	1 cut(s)	1171
Acc65I	GGTACC	1 cut(s)	1428
AccB1I	GGYRCC	3 cut(s)	142, 1428, 1585
AccB7I	CCANNNNNTGG	1 cut(s)	1438
AciI	CCGC	2 cut(s)	1045, 1457
AclWI	GGATC	2 cut(s)	1554, 1576
AcsI	RAATTY	3 cut(s)	79, 152, 1214
AcuI	CTGAAG	4 cut(s)	371, 394, 600, 705
AdeI	CACNNNGTG	1 cut(s)	518
AfaI	GTAC	1 cut(s)	1430
AfiI	CCNNNNNNNGG	2 cut(s)	99, 1438
AgsI	TTSAA	4 cut(s)	67, 187, 676, 875
AjnI	CCWGG	1 cut(s)	1431
Alw21I	GWGCWC	2 cut(s)	273, 1157
Alw26I	GTCTC	5 cut(s)	220, 242, 692, 898, 932
AlwI	GGATC	2 cut(s)	1554, 1576
AlwNI	CAGNNNCTG	2 cut(s)	257, 266
AoxI	GGCC	2 cut(s)	562, 610
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	3 cut(s)	79, 152, 1214
ArsI	GACNNNNNNTTYG	2 cut(s)	910, 942
AseI	ATTAAT	1 cut(s)	1274
Asp700I	GAANNNNTTC	3 cut(s)	384, 806, 1217
Asp718I	GGTACC	1 cut(s)	1428
AspS9I	GGNCC	3 cut(s)	611, 1096, 1670
AsuHPI	GGTGA	1 cut(s)	714
AvaII	GGWCC	2 cut(s)	1096, 1670
BaeGI	GKGCMC	1 cut(s)	462
BanI	GGYRCC	3 cut(s)	142, 1428, 1585
BauI	CACGAG	1 cut(s)	466
BbsI	GAAGAC	1 cut(s)	597
Bbv12I	GWGCWC	2 cut(s)	273, 1157
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	2 cut(s)	1309, 1661
BciT130I	CCWGG	1 cut(s)	1433
BciVI	GTATCC	1 cut(s)	1590
BclI	TGATCA	1 cut(s)	1462
BcoDI	GTCTC	5 cut(s)	220, 242, 692, 898, 932
BfaI	CTAG	2 cut(s)	362, 981
BfmI	CTRYAG	3 cut(s)	84, 258, 1447
BfuI	GTATCC	1 cut(s)	1590
BisI	GCNGC	1 cut(s)	195
BlpI	GCTNAGC	1 cut(s)	1698
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	1 cut(s)	1433
Bme18I	GGWCC	2 cut(s)	1096, 1670
BmgT120I	GGNCC	3 cut(s)	611, 1096, 1670
BmiI	GGNNCC	6 cut(s)	91, 144, 359, 834, 1430, 1587
BmrFI	CCNGG	1 cut(s)	1433
BpiI	GAAGAC	1 cut(s)	597
BplI	GAGNNNNNCTC	2 cut(s)	912, 944
BpmI	CTGGAG	1 cut(s)	241
Bpu10I	CCTNAGC	1 cut(s)	1000
Bpu1102I	GCTNAGC	1 cut(s)	1698
BpuEI	CTTGAG	2 cut(s)	272, 1769
BsaI	GGTCTC	1 cut(s)	932
BsaJI	CCNNGG	2 cut(s)	306, 319
BsaWI	WCCGGW	1 cut(s)	1582
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 1438
Bse1I	ACTGG	4 cut(s)	224, 404, 1683, 1719
Bse3DI	GCAATG	1 cut(s)	1564
BseBI	CCWGG	1 cut(s)	1433
BseDI	CCNNGG	2 cut(s)	306, 319
BseGI	GGATG	9 cut(s)	316, 603, 671, 1390, 1618, 1630, 1636, 1642, 1648
BseLI	CCNNNNNNNGG	2 cut(s)	99, 1438
BseMI	GCAATG	1 cut(s)	1564
BseMII	CTCAG	6 cut(s)	407, 465, 813, 825, 1200, 1689
BseNI	ACTGG	4 cut(s)	224, 404, 1683, 1719
BseRI	GAGGAG	3 cut(s)	238, 260, 1028
BseSI	GKGCMC	1 cut(s)	462
BseXI	GCAGC	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	779
BshFI	GGCC	2 cut(s)	564, 612
BshNI	GGYRCC	3 cut(s)	142, 1428, 1585
BsiHKAI	GWGCWC	2 cut(s)	273, 1157
BsiSI	CCGG	1 cut(s)	1583
BslFI	GGGAC	3 cut(s)	419, 1145, 1282
BslI	CCNNNNNNNGG	2 cut(s)	99, 1438
BsmAI	GTCTC	5 cut(s)	220, 242, 692, 898, 932
BsmFI	GGGAC	3 cut(s)	419, 1145, 1282
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	2 cut(s)	564, 612
Bso31I	GGTCTC	1 cut(s)	932
Bsp1286I	GDGCHC	3 cut(s)	273, 462, 1157
Bsp143I	GATC	4 cut(s)	1147, 1462, 1546, 1568
Bsp1720I	GCTNAGC	1 cut(s)	1698
BspACI	CCGC	2 cut(s)	1045, 1457
BspANI	GGCC	2 cut(s)	564, 612
BspCNI	CTCAG	6 cut(s)	406, 466, 814, 824, 1201, 1690
BspLI	GGNNCC	6 cut(s)	91, 144, 359, 834, 1430, 1587
BspMAI	CTGCAG	1 cut(s)	262
BspPI	GGATC	2 cut(s)	1554, 1576
BspT107I	GGYRCC	3 cut(s)	142, 1428, 1585
BspTNI	GGTCTC	1 cut(s)	932
BsrDI	GCAATG	1 cut(s)	1564
BsrI	ACTGG	4 cut(s)	224, 404, 1683, 1719
BssECI	CCNNGG	2 cut(s)	306, 319
BssMI	GATC	4 cut(s)	1147, 1462, 1546, 1568
BssSI	CACGAG	1 cut(s)	466
BssT1I	CCWWGG	2 cut(s)	306, 319
Bst2BI	CACGAG	1 cut(s)	466
Bst2UI	CCWGG	1 cut(s)	1433
Bst4CI	ACNGT	4 cut(s)	621, 847, 1111, 1730
Bst6I	CTCTTC	2 cut(s)	106, 979
BstC8I	GCNNGC	3 cut(s)	137, 141, 1338
BstDEI	CTNAG	8 cut(s)	393, 474, 811, 822, 1000, 1209, 1290, 1698
BstF5I	GGATG	9 cut(s)	316, 603, 671, 1390, 1618, 1630, 1636, 1642, 1648
BstKTI	GATC	4 cut(s)	1150, 1465, 1549, 1571
BstMAI	GTCTC	5 cut(s)	220, 242, 692, 898, 932
BstMBI	GATC	4 cut(s)	1147, 1462, 1546, 1568
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 1502
BstNI	CCWGG	1 cut(s)	1433
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	1431
BstSFI	CTRYAG	3 cut(s)	84, 258, 1447
BstSLI	GKGCMC	1 cut(s)	462
BstV1I	GCAGC	1 cut(s)	181
BstV2I	GAAGAC	1 cut(s)	597
BstX2I	RGATCY	1 cut(s)	1568
BstYI	RGATCY	1 cut(s)	1568
BsuI	GTATCC	1 cut(s)	1590
BsuRI	GGCC	2 cut(s)	564, 612
BtsCI	GGATG	9 cut(s)	316, 603, 671, 1390, 1618, 1630, 1636, 1642, 1648
BtsI	GCAGTG	1 cut(s)	1420
BtsIMutI	CAGTG	3 cut(s)	819, 1420, 1676
Cac8I	GCNNGC	3 cut(s)	137, 141, 1338
CaiI	CAGNNNCTG	2 cut(s)	257, 266
Cfr13I	GGNCC	3 cut(s)	611, 1096, 1670
CseI	GACGC	1 cut(s)	1079
Csp6I	GTAC	1 cut(s)	1429
CviAII	CATG	6 cut(s)	136, 754, 1123, 1198, 1381, 1709
CviQI	GTAC	1 cut(s)	1429
DdeI	CTNAG	8 cut(s)	393, 474, 811, 822, 1000, 1209, 1290, 1698
DpnI	GATC	4 cut(s)	1149, 1464, 1548, 1570
DpnII	GATC	4 cut(s)	1147, 1462, 1546, 1568
DraI	TTTAAA	4 cut(s)	708, 729, 1117, 1246
DraIII	CACNNNGTG	1 cut(s)	518
DrdI	GACNNNNNNGTC	1 cut(s)	1171
DseDI	GACNNNNNNGTC	1 cut(s)	1171
Eam1104I	CTCTTC	2 cut(s)	106, 979
EarI	CTCTTC	2 cut(s)	106, 979
EciI	GGCGGA	1 cut(s)	1446
Eco130I	CCWWGG	2 cut(s)	306, 319
Eco31I	GGTCTC	1 cut(s)	932
Eco47I	GGWCC	2 cut(s)	1096, 1670
Eco57I	CTGAAG	4 cut(s)	371, 394, 600, 705
EcoRII	CCWGG	1 cut(s)	1431
EcoT14I	CCWWGG	2 cut(s)	306, 319
EcoT22I	ATGCAT	3 cut(s)	1192, 1243, 1390
ErhI	CCWWGG	2 cut(s)	306, 319
FaeI	CATG	6 cut(s)	139, 757, 1126, 1201, 1384, 1712
FaqI	GGGAC	3 cut(s)	419, 1145, 1282
FatI	CATG	6 cut(s)	135, 753, 1122, 1197, 1380, 1708
FauI	CCCGC	1 cut(s)	1052
FauNDI	CATATG	3 cut(s)	550, 1180, 1390
FbaI	TGATCA	1 cut(s)	1462
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	9 cut(s)	323, 610, 678, 1397, 1625, 1637, 1643, 1649, 1655
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	2 cut(s)	362, 981
GluI	GCNGC	1 cut(s)	195
GsaI	CCCAGC	1 cut(s)	783
GsuI	CTGGAG	1 cut(s)	241
HaeIII	GGCC	2 cut(s)	564, 612
HapII	CCGG	1 cut(s)	1583
HgaI	GACGC	1 cut(s)	1079
Hin1II	CATG	6 cut(s)	139, 757, 1126, 1201, 1384, 1712
HincII	GTYRAC	1 cut(s)	1735
HindII	GTYRAC	1 cut(s)	1735
HindIII	AAGCTT	2 cut(s)	479, 1050
HinfI	GANTC	4 cut(s)	373, 391, 700, 1442
HpaI	GTTAAC	1 cut(s)	1735
HpaII	CCGG	1 cut(s)	1583
HphI	GGTGA	1 cut(s)	714
Hpy166II	GTNNAC	2 cut(s)	1096, 1735
Hpy188I	TCNGA	9 cut(s)	390, 396, 801, 823, 932, 1037, 1195, 1467, 1551
Hpy188III	TCNNGA	7 cut(s)	377, 427, 1086, 1145, 1306, 1369, 1544
Hpy8I	GTNNAC	2 cut(s)	1096, 1735
Hpy99I	CGWCG	2 cut(s)	847, 1168
HpyAV	CCTTC	6 cut(s)	166, 588, 769, 1122, 1510, 1683
HpyCH4III	ACNGT	4 cut(s)	621, 847, 1111, 1730
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 1502
HpyF3I	CTNAG	8 cut(s)	393, 474, 811, 822, 1000, 1209, 1290, 1698
Hsp92II	CATG	6 cut(s)	139, 757, 1126, 1201, 1384, 1712
KpnI	GGTACC	1 cut(s)	1432
Ksp22I	TGATCA	1 cut(s)	1462
KspAI	GTTAAC	1 cut(s)	1735
Kzo9I	GATC	4 cut(s)	1147, 1462, 1546, 1568
LmnI	GCTCC	2 cut(s)	46, 783
Lsp1109I	GCAGC	1 cut(s)	181
MaeI	CTAG	2 cut(s)	362, 981
MaeIII	GTNAC	4 cut(s)	628, 847, 1258, 1681
MalI	GATC	4 cut(s)	1149, 1464, 1548, 1570
MboI	GATC	4 cut(s)	1147, 1462, 1546, 1568
MflI	RGATCY	1 cut(s)	1568
MhlI	GDGCHC	3 cut(s)	273, 462, 1157
MluCI	AATT	7 cut(s)	52, 79, 152, 240, 880, 1214, 1661
MlyI	GAGTC	2 cut(s)	385, 694
MmeI	TCCRAC	1 cut(s)	955
Mph1103I	ATGCAT	3 cut(s)	1192, 1243, 1390
MroXI	GAANNNNTTC	3 cut(s)	384, 806, 1217
MspI	CCGG	1 cut(s)	1583
MspR9I	CCNGG	1 cut(s)	1433
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	1433
MwoI	GCNNNNNNNGC	2 cut(s)	203, 1502
NdeI	CATATG	3 cut(s)	550, 1180, 1390
NdeII	GATC	4 cut(s)	1147, 1462, 1546, 1568
NlaIII	CATG	6 cut(s)	139, 757, 1126, 1201, 1384, 1712
NlaIV	GGNNCC	6 cut(s)	91, 144, 359, 834, 1430, 1587
NmeAIII	GCCGAG	1 cut(s)	232
NmuCI	GTSAC	3 cut(s)	628, 1258, 1681
NsiI	ATGCAT	3 cut(s)	1192, 1243, 1390
NspI	RCATGY	1 cut(s)	139
PaeI	GCATGC	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	1 cut(s)	1734
PctI	GAATGC	1 cut(s)	77
PdmI	GAANNNNTTC	3 cut(s)	384, 806, 1217
PfeI	GAWTC	2 cut(s)	373, 1442
PflMI	CCANNNNNTGG	1 cut(s)	1438
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	2 cut(s)	385, 694
PpsI	GAGTC	2 cut(s)	385, 694
PshBI	ATTAAT	1 cut(s)	1274
PsiI	TTATAA	3 cut(s)	437, 855, 1056
Psp6I	CCWGG	1 cut(s)	1431
PspFI	CCCAGC	1 cut(s)	779
PspGI	CCWGG	1 cut(s)	1431
PspN4I	GGNNCC	6 cut(s)	91, 144, 359, 834, 1430, 1587
PspPI	GGNCC	3 cut(s)	611, 1096, 1670
PstI	CTGCAG	1 cut(s)	262
PstNI	CAGNNNCTG	2 cut(s)	257, 266
PsuI	RGATCY	1 cut(s)	1568
RsaI	GTAC	1 cut(s)	1430
RsaNI	GTAC	1 cut(s)	1429
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	4 cut(s)	1147, 1462, 1546, 1568
Sau96I	GGNCC	3 cut(s)	611, 1096, 1670
SchI	GAGTC	2 cut(s)	385, 694
ScrFI	CCNGG	1 cut(s)	1433
SduI	GDGCHC	3 cut(s)	273, 462, 1157
SfcI	CTRYAG	3 cut(s)	84, 258, 1447
SinI	GGWCC	2 cut(s)	1096, 1670
SmlI	CTYRAG	2 cut(s)	287, 1748
SmoI	CTYRAG	2 cut(s)	287, 1748
SphI	GCATGC	1 cut(s)	139
Sse9I	AATT	7 cut(s)	52, 79, 152, 240, 880, 1214, 1661
SsiI	CCGC	2 cut(s)	1045, 1457
SspI	AATATT	2 cut(s)	588, 693
SspMI	CTAG	2 cut(s)	362, 981
StyD4I	CCNGG	1 cut(s)	1431
StyI	CCWWGG	2 cut(s)	306, 319
TaaI	ACNGT	4 cut(s)	621, 847, 1111, 1730
TaqI	TCGA	4 cut(s)	378, 842, 1105, 1305
TasI	AATT	7 cut(s)	52, 79, 152, 240, 880, 1214, 1661
TfiI	GAWTC	2 cut(s)	373, 1442
TscAI	CASTG	3 cut(s)	819, 1420, 1683
TseFI	GTSAC	3 cut(s)	628, 1258, 1681
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	3 cut(s)	628, 1258, 1681
TspRI	CASTG	3 cut(s)	819, 1420, 1683
Van91I	CCANNNNNTGG	1 cut(s)	1438
VpaK11BI	GGWCC	2 cut(s)	1096, 1670
VspI	ATTAAT	1 cut(s)	1274
XapI	RAATTY	3 cut(s)	79, 152, 1214
XceI	RCATGY	1 cut(s)	139
XmnI	GAANNNNTTC	3 cut(s)	384, 806, 1217
XspI	CTAG	2 cut(s)	362, 981
Zsp2I	ATGCAT	3 cut(s)	1192, 1243, 1390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.