FvH4_6g41290

Protein of unknown function (DUF568)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012003
Physical Location & Seq
Reverse (-)
32505721 .. 32507128
1408 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41290.t1

Sequence Viewer

Length: 1203 bp
ATGCTCTTCCTCTTCTGCCTCTTCTTTCTCTTTTCCCTCCCCAATGTCACATTTTGTGCCCATTGTACCACCTCCACACCCACTAAAACCTTTGAAAAATGTATCACTCTCCCAACCCAACAAGCCTCCATAGCATGGACATACCATTCCCACAACTCAACCCTAGACCTCGTCTTCTTGGGAGCCTTCATATCGCCTTCCGGCTGGGTAGGGTGGGGCATCAACCCTACCTCAGCCGAAATGACAGGTACTCGTGCCCTAATCGCCTTCCCTGATCCTAACACAGGCCAAATAGTCCTACTACCTTACATCATAGACCCAACAGTCAAACTCCAACGTACCCCTCTCCTCTCCCGCCCTCTCGACATCCACCTCATCTCCTCCTCCGCCACCCTATACGGCGGAAAATTAGCCACCGTCCACGACGGCGCAGCCGTCCAAATCTACGCTACATTGAAGCTTGCAACAAACAAGACAAAGCTCAACCACGTGTGGAACCGCGGGCTCTATGTCCAAGGCTACTCCCCAACCGTACACCCAACTAACCCCAACGACCTCTCCTCCATAACAACCTTTGACGTCAGGTCAGGCTCAACCGCCACACGCCACACCAACATTCTGACCCTCCGATCAGCCCATGGCATCATCAATGCTGTTTCTTGGGGGATAATGTTACCCATCGGAGCAGTCACAGCTCGCTACCTTCGACACGTCCAATCACTTGGTCCTACGTGGTTCTACGTCCACGCTGCGATTCAGCTCTTTGGTTTTGTGTTAGGGACTATAGGGTTTGCTATTGGGGTCAGGCTTGGTGATATGTCACCTGGGGTACAATATAGTCTGCACAGGAAGCTAGGGTTTGCTGCATTCTGCTTGGGAGGGCTTCAGACTCTGGCGTTATTGTTCCGGCCGAAGACGACGAACAAGTTCAGGAAGTACTGGAAGTCTTACCACCATTTTGTAGGGTATGCTTGTGTGGTGCTTGGGGTTGTGAATGTGTTTCAGGGTTTTGAGGTGATGGGAGCAGAAAGGTCGTATGCTAAGTTGGTTTATTGTTTGGGGCTTTCAACATTGATTGGTGTTTGCATAGCATTGGAGGTGAATTCTTGGGTGGTGTTCTGTAGGAAATCTAAGGAGGAGAAGCTGAGGAGGGAAGGTTTGATTGGAGGGTCTGATAAAGGCAGTGGAAACATCTACAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

401

Amino Acids

43.92

Weight (kDa)

9.58

Isoelectric Point (pI)

32.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 81 - 193 2.8e-21 Protein of unknown function (DUF568)
Cytochrom_B561 PF03188 245 - 337 5.4e-09 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04850
fragaria_vesca FvH4_6g41290
malus_domestica MD09G1120800.v1.1 MD17G1111800.v1.1
prunus_persica Prupe.3G202700_v2.0.a1
pyrus_communis pycom09g04540 pycom17g10370
rosa_chinensis RchiOBHm_Chr2g0156851
rosa_laevigata RLG00000020946
rosa_multiflora Rmu_co8482377.1_g000001 Rmu_sc0008149.1_g000001 Rmu_ssc0000286.1_g000024
rosa_roxburghii Rroxscaffold_2G00092670
rosa_rugosa Rorug02G0456600
rosa_samantha Rh2AG522200 Rh2BG535600 Rh2CG507100 Rh2DG544600
rosa_wichuraiana Rw2G043120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 323
AatII GACGTC 1 cut(s) 582
AccB7I CCANNNNNTGG 1 cut(s) 135
AccII CGCG 1 cut(s) 501
AciI CCGC 6 cut(s) 355, 387, 402, 499, 501, 597
AclWI GGATC 1 cut(s) 269
AcoI YGGCCR 1 cut(s) 908
AcsI RAATTY 1 cut(s) 1102
AcuI CTGAAG 1 cut(s) 869
AcvI CACGTG 1 cut(s) 490
AcyI GRCGYC 1 cut(s) 579
AfaI GTAC 6 cut(s) 67, 250, 340, 534, 831, 938
AfiI CCNNNNNNNGG 2 cut(s) 135, 284
AflIII ACRYGT 2 cut(s) 489, 709
AgsI TTSAA 3 cut(s) 95, 457, 1068
AhdI GACNNNNNGTC 1 cut(s) 583
AjiI CACGTC 1 cut(s) 712
AjnI CCWGG 1 cut(s) 823
AjuI GAANNNNNNNTTGG 2 cut(s) 1146, 1178
AluBI AGCT 6 cut(s) 460, 481, 695, 760, 853, 1144
AluI AGCT 6 cut(s) 460, 481, 695, 760, 853, 1144
AlwI GGATC 1 cut(s) 269
AlwNI CAGNNNCTG 1 cut(s) 892
AoxI GGCC 2 cut(s) 286, 908
ApeKI GCWGC 3 cut(s) 431, 749, 863
ApoI RAATTY 1 cut(s) 1102
Asp700I GAANNNNTTC 1 cut(s) 926
AspLEI GCGC 1 cut(s) 431
AspS9I GGNCC 1 cut(s) 725
AsuHPI GGTGA 4 cut(s) 813, 824, 1027, 1111
AvaII GGWCC 1 cut(s) 725
BaeGI GKGCMC 2 cut(s) 61, 259
BanII GRGCYC 1 cut(s) 507
BauI CACGAG 1 cut(s) 252
BbrPI CACGTG 1 cut(s) 490
BbsI GAAGAC 2 cut(s) 166, 920
BbvCI CCTCAGC 2 cut(s) 232, 1145
BbvI GCAGC 3 cut(s) 443, 736, 850
BccI CCATC 2 cut(s) 686, 1012
BceAI ACGGC 3 cut(s) 415, 419, 442
BcgI CGANNNNNNTGC 2 cut(s) 1014, 1048
BciT130I CCWGG 1 cut(s) 825
BfaI CTAG 2 cut(s) 164, 854
BfmI CTRYAG 3 cut(s) 783, 1120, 1195
BisI GCNGC 3 cut(s) 432, 750, 864
BlsI GCNGC 3 cut(s) 433, 751, 865
BmcAI AGTACT 1 cut(s) 938
Bme1390I CCNGG 1 cut(s) 825
Bme18I GGWCC 1 cut(s) 725
BmeRI GACNNNNNGTC 1 cut(s) 583
BmgBI CACGTC 1 cut(s) 712
BmgT120I GGNCC 1 cut(s) 725
BmiI GGNNCC 2 cut(s) 184, 497
BmrFI CCNGG 1 cut(s) 825
BmsI GCATC 2 cut(s) 228, 651
BpiI GAAGAC 2 cut(s) 166, 920
Bpu10I CCTNAGC 2 cut(s) 232, 1145
BsaAI YACGTR 2 cut(s) 490, 732
BsaHI GRCGYC 1 cut(s) 579
BsaJI CCNNGG 4 cut(s) 499, 514, 637, 824
BsaXI ACNNNNNCTCC 8 cut(s) 362, 392, 542, 545, 572, 575, 1141, 1171
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 284
Bse1I ACTGG 1 cut(s) 944
BseBI CCWGG 1 cut(s) 825
BseDI CCNNGG 4 cut(s) 499, 514, 637, 824
BseGI GGATG 1 cut(s) 366
BseLI CCNNNNNNNGG 2 cut(s) 135, 284
BseMII CTCAG 2 cut(s) 246, 1136
BseNI ACTGG 1 cut(s) 944
BseRI GAGGAG 6 cut(s) 338, 370, 373, 550, 1151, 1162
BseSI GKGCMC 2 cut(s) 61, 259
BseX3I CGGCCG 1 cut(s) 908
BseXI GCAGC 3 cut(s) 443, 736, 850
BseYI CCCAGC 1 cut(s) 204
BsgI GTGCAG 1 cut(s) 827
Bsh1236I CGCG 1 cut(s) 501
Bsh1285I CGRYCG 1 cut(s) 911
BshFI GGCC 2 cut(s) 288, 910
BsiEI CGRYCG 1 cut(s) 911
BsiSI CCGG 2 cut(s) 201, 907
BslFI GGGAC 1 cut(s) 793
BslI CCNNNNNNNGG 2 cut(s) 135, 284
BsmFI GGGAC 1 cut(s) 793
BsmI GAATGC 1 cut(s) 866
BsnI GGCC 2 cut(s) 288, 910
Bsp1286I GDGCHC 3 cut(s) 61, 259, 507
Bsp143I GATC 2 cut(s) 274, 629
Bsp19I CCATGG 1 cut(s) 637
BspACI CCGC 6 cut(s) 355, 387, 402, 499, 501, 597
BspANI GGCC 2 cut(s) 288, 910
BspCNI CTCAG 2 cut(s) 245, 1137
BspFNI CGCG 1 cut(s) 501
BspLI GGNNCC 2 cut(s) 184, 497
BspPI GGATC 1 cut(s) 269
BspQI GCTCTTC 1 cut(s) 11
BsrI ACTGG 1 cut(s) 944
BssECI CCNNGG 4 cut(s) 499, 514, 637, 824
BssMI GATC 2 cut(s) 274, 629
BssNI GRCGYC 1 cut(s) 579
BssSI CACGAG 1 cut(s) 252
BssT1I CCWWGG 2 cut(s) 514, 637
Bst2BI CACGAG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 825
Bst4CI ACNGT 4 cut(s) 325, 418, 532, 1199
Bst6I CTCTTC 3 cut(s) 11, 17, 26
BstACI GRCGYC 1 cut(s) 579
BstBAI YACGTR 2 cut(s) 490, 732
BstC8I GCNNGC 3 cut(s) 462, 503, 697
BstDEI CTNAG 4 cut(s) 232, 1041, 1131, 1145
BstDSI CCRYGG 2 cut(s) 499, 637
BstENI CCTNNNNNAGG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 366
BstFNI CGCG 1 cut(s) 501
BstHHI GCGC 1 cut(s) 431
BstKTI GATC 2 cut(s) 277, 632
BstMBI GATC 2 cut(s) 274, 629
BstMCI CGRYCG 1 cut(s) 911
BstMWI GCNNNNNNNGC 4 cut(s) 131, 263, 692, 850
BstNI CCWGG 1 cut(s) 825
BstSCI CCNGG 1 cut(s) 823
BstSFI CTRYAG 3 cut(s) 783, 1120, 1195
BstSLI GKGCMC 2 cut(s) 61, 259
BstUI CGCG 1 cut(s) 501
BstV1I GCAGC 3 cut(s) 443, 736, 850
BstV2I GAAGAC 2 cut(s) 166, 920
BstXI CCANNNNNNTGG 1 cut(s) 722
BstZI CGGCCG 1 cut(s) 908
BsuRI GGCC 2 cut(s) 288, 910
BtgI CCRYGG 2 cut(s) 499, 637
BtrI CACGTC 1 cut(s) 712
BtsCI GGATG 1 cut(s) 366
BtsI GCAGTG 1 cut(s) 1189
BtsIMutI CAGTG 1 cut(s) 1189
Cac8I GCNNGC 3 cut(s) 462, 503, 697
CaiI CAGNNNCTG 1 cut(s) 892
CfoI GCGC 1 cut(s) 431
Cfr13I GGNCC 1 cut(s) 725
Cfr42I CCGCGG 1 cut(s) 502
Csp6I GTAC 6 cut(s) 66, 249, 339, 533, 830, 937
CviAII CATG 2 cut(s) 135, 638
CviQI GTAC 6 cut(s) 66, 249, 339, 533, 830, 937
DdeI CTNAG 4 cut(s) 232, 1041, 1131, 1145
DpnI GATC 2 cut(s) 276, 631
DpnII GATC 2 cut(s) 274, 629
DrdI GACNNNNNNGTC 1 cut(s) 323
DriI GACNNNNNGTC 1 cut(s) 583
DseDI GACNNNNNNGTC 1 cut(s) 323
EaeI YGGCCR 1 cut(s) 908
EagI CGGCCG 1 cut(s) 908
Eam1104I CTCTTC 3 cut(s) 11, 17, 26
Eam1105I GACNNNNNGTC 1 cut(s) 583
EarI CTCTTC 3 cut(s) 11, 17, 26
EciI GGCGGA 2 cut(s) 376, 417
EclXI CGGCCG 1 cut(s) 908
Eco130I CCWWGG 2 cut(s) 514, 637
Eco24I GRGCYC 1 cut(s) 507
Eco47I GGWCC 1 cut(s) 725
Eco52I CGGCCG 1 cut(s) 908
Eco57I CTGAAG 1 cut(s) 869
Eco72I CACGTG 1 cut(s) 490
EcoNI CCTNNNNNAGG 1 cut(s) 282
EcoRI GAATTC 1 cut(s) 1102
EcoRII CCWGG 1 cut(s) 823
EcoT14I CCWWGG 2 cut(s) 514, 637
EcoT38I GRGCYC 1 cut(s) 507
ErhI CCWWGG 2 cut(s) 514, 637
FaeI CATG 2 cut(s) 138, 641
FaqI GGGAC 1 cut(s) 793
FatI CATG 2 cut(s) 134, 637
FauI CCCGC 2 cut(s) 362, 494
Fnu4HI GCNGC 3 cut(s) 432, 750, 864
FokI GGATG 1 cut(s) 353
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 3 cut(s) 432, 750, 864
FspBI CTAG 2 cut(s) 164, 854
GlaI GCGC 1 cut(s) 430
GluI GCNGC 3 cut(s) 432, 750, 864
GsaI CCCAGC 1 cut(s) 208
HaeIII GGCC 2 cut(s) 288, 910
HapII CCGG 2 cut(s) 201, 907
HhaI GCGC 1 cut(s) 431
Hin1I GRCGYC 1 cut(s) 579
Hin1II CATG 2 cut(s) 138, 641
Hin6I GCGC 1 cut(s) 429
HinP1I GCGC 1 cut(s) 429
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 2 cut(s) 754, 889
HpaII CCGG 2 cut(s) 201, 907
HphI GGTGA 4 cut(s) 813, 824, 1027, 1111
Hpy166II GTNNAC 3 cut(s) 421, 535, 745
Hpy188I TCNGA 5 cut(s) 621, 629, 683, 888, 1174
Hpy188III TCNNGA 2 cut(s) 362, 931
Hpy8I GTNNAC 3 cut(s) 421, 535, 745
Hpy99I CGWCG 2 cut(s) 428, 922
HpyAV CCTTC 5 cut(s) 196, 207, 277, 713, 1148
HpyCH4III ACNGT 4 cut(s) 325, 418, 532, 1199
HpyCH4IV ACGT 6 cut(s) 337, 489, 579, 711, 731, 741
HpyCH4V TGCA 4 cut(s) 464, 844, 866, 1086
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 263, 692, 850
HpyF3I CTNAG 4 cut(s) 232, 1041, 1131, 1145
HpySE526I ACGT 6 cut(s) 337, 489, 579, 711, 731, 741
Hsp92I GRCGYC 1 cut(s) 579
Hsp92II CATG 2 cut(s) 138, 641
HspAI GCGC 1 cut(s) 429
KspI CCGCGG 1 cut(s) 502
Kzo9I GATC 2 cut(s) 274, 629
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 3 cut(s) 182, 683, 1022
Lsp1109I GCAGC 3 cut(s) 443, 736, 850
LweI GCATC 2 cut(s) 228, 651
MaeI CTAG 2 cut(s) 164, 854
MaeII ACGT 6 cut(s) 337, 489, 579, 711, 731, 741
MaeIII GTNAC 4 cut(s) 46, 672, 688, 819
MalI GATC 2 cut(s) 276, 631
MboI GATC 2 cut(s) 274, 629
MboII GAAGA 4 cut(s) 4, 13, 166, 925
MhlI GDGCHC 3 cut(s) 61, 259, 507
MluCI AATT 2 cut(s) 407, 1102
MlyI GAGTC 1 cut(s) 883
MmeI TCCRAC 1 cut(s) 358
MroXI GAANNNNTTC 1 cut(s) 926
MspA1I CMGCKG 1 cut(s) 501
MspI CCGG 2 cut(s) 201, 907
MspR9I CCNGG 1 cut(s) 825
Mva1269I GAATGC 1 cut(s) 866
MvaI CCWGG 1 cut(s) 825
MvnI CGCG 1 cut(s) 501
MwoI GCNNNNNNNGC 4 cut(s) 131, 263, 692, 850
NcoI CCATGG 1 cut(s) 637
NdeII GATC 2 cut(s) 274, 629
NlaIII CATG 2 cut(s) 138, 641
NlaIV GGNNCC 2 cut(s) 184, 497
NmuCI GTSAC 3 cut(s) 46, 688, 819
PciSI GCTCTTC 1 cut(s) 11
PcsI WCGNNNNNNNCGW 2 cut(s) 432, 703
PctI GAATGC 1 cut(s) 866
PdmI GAANNNNTTC 1 cut(s) 926
PfeI GAWTC 1 cut(s) 754
PflFI GACNNNGTC 1 cut(s) 170
PflMI CCANNNNNTGG 1 cut(s) 135
PkrI GCNGC 3 cut(s) 433, 751, 865
PleI GAGTC 1 cut(s) 883
PmaCI CACGTG 1 cut(s) 490
PmlI CACGTG 1 cut(s) 490
PpsI GAGTC 1 cut(s) 883
Ppu21I YACGTR 2 cut(s) 490, 732
Psp6I CCWGG 1 cut(s) 823
PspCI CACGTG 1 cut(s) 490
PspFI CCCAGC 1 cut(s) 204
PspGI CCWGG 1 cut(s) 823
PspN4I GGNNCC 2 cut(s) 184, 497
PspPI GGNCC 1 cut(s) 725
PstNI CAGNNNCTG 1 cut(s) 892
PsyI GACNNNGTC 1 cut(s) 170
RsaI GTAC 6 cut(s) 67, 250, 340, 534, 831, 938
RsaNI GTAC 6 cut(s) 66, 249, 339, 533, 830, 937
SacII CCGCGG 1 cut(s) 502
SapI GCTCTTC 1 cut(s) 11
SatI GCNGC 3 cut(s) 432, 750, 864
Sau3AI GATC 2 cut(s) 274, 629
Sau96I GGNCC 1 cut(s) 725
ScaI AGTACT 1 cut(s) 938
SchI GAGTC 1 cut(s) 883
ScrFI CCNGG 1 cut(s) 825
SduI GDGCHC 3 cut(s) 61, 259, 507
SfaNI GCATC 2 cut(s) 228, 651
SfcI CTRYAG 3 cut(s) 783, 1120, 1195
Sfr303I CCGCGG 1 cut(s) 502
SgrBI CCGCGG 1 cut(s) 502
SinI GGWCC 1 cut(s) 725
Sse9I AATT 2 cut(s) 407, 1102
SsiI CCGC 6 cut(s) 355, 387, 402, 499, 501, 597
SspMI CTAG 2 cut(s) 164, 854
StyD4I CCNGG 1 cut(s) 823
StyI CCWWGG 2 cut(s) 514, 637
TaaI ACNGT 4 cut(s) 325, 418, 532, 1199
TaiI ACGT 6 cut(s) 340, 492, 582, 714, 734, 744
TaqI TCGA 2 cut(s) 363, 706
TasI AATT 2 cut(s) 407, 1102
TatI WGTACW 1 cut(s) 936
TfiI GAWTC 1 cut(s) 754
TscAI CASTG 1 cut(s) 1189
TseFI GTSAC 3 cut(s) 46, 688, 819
TseI GCWGC 3 cut(s) 431, 749, 863
Tsp45I GTSAC 3 cut(s) 46, 688, 819
TspDTI ATGAA 1 cut(s) 178
TspRI CASTG 1 cut(s) 1189
Tth111I GACNNNGTC 1 cut(s) 170
Van91I CCANNNNNTGG 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 725
XagI CCTNNNNNAGG 1 cut(s) 282
XapI RAATTY 1 cut(s) 1102
XmnI GAANNNNTTC 1 cut(s) 926
XspI CTAG 2 cut(s) 164, 854
ZraI GACGTC 1 cut(s) 580
ZrmI AGTACT 1 cut(s) 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.