Rw2G043120

Protein of unknown function (DUF568)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0012003
Physical Location & Seq
Reverse (-)
69479037 .. 69480658
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G043120.1

Sequence Viewer

Length: 1203 bp
ATGCTCTTCCTCTTCTGCCTCTTCTTTCTCTTTTCCCTCCCCAATGTCACATTTTGTGCTCATTGTACCACCACCACACCCACTAGAACCTTTGATAAATGTATCACCCTCCCAACACAACAAGCCTCCATAGCATGGACATACCATTCCCACAATTCAACCCTCGACCTTGTTTTCTTCGGAACCTTCATATCGCCTTCCGGCTGGGTTGGGTGGGGCATCAACCCTACGTCCGCGGAAATGACAGGTACGCGTGCCCTAATTGCCTTTCCTGACCCTAACACGGGCCAAATAGTCCTACTACCTTACATCATAGACCCAACAGTCAAACTCCAACGTACCCCTCTCCTCTCCCGCCCTCTCGACATCCACCTCATTTCATCCTCCGCCACCCTATACGGCGGCAAACTAGCCACCGTCCATGATGGCGCCGCCGTCCAAATCTACGCCACATTGAAGCTCACAGCAAACAAGACAAAGCTCCACCACGTGTGGAACCGCGGGCTCTACGTCCAAGGCTACTCCCCAACCGTACACCCAACAAACCAAAACGACCTCTCCTCCATAACAACCTTTGACGTCAGGTCAGGCTCAACCGCCACACGCCACACTAACATTCTGACCCTCAGATCAGCCCATGGCATCATTAATGCTGTTTCTTGGGGGATAATGTTACCCATCGGAGCAGTGACAGCTCGCTACCTTCGACACGTCCAATCACTCGGTCCCACGTGGTTCTACGTCCACGCTGCGATCCAACTGTTTGGTTTTGTGTTAGGGACGGTAGGGTTTGCTATTGGGGTCAAGCTTGGTGATATGTCACCTGGTGTACAATATAGTCTGCACAGGAAGCTAGGGTTCGCTGCATTCTGCTTGGGAGGGCTTCAGACTCTGGCGCTGTTGTTCCGGCCCAAGACTACGACCAAATTCAGGAAGTACTGGAAGTCTTACCACCATTTTGTTGGATATGCTTGTGTGGTGCTTGGGGTTGTGAATGTGTTCCAGGGTTTTGAGGTGATGGGAGCAGCAAGGTCTTATGCTAAGTTGGCTTATTGTTTGGGGCTTTCAACATTGCTTGGTGTTTGTATAGCATTGGAGGTGAATTCTTGGGTGGTGTTCTGTAGGAAATCTAAGGAGGAGAAACTGAGGAGGGAAGGTCTGATTGGAGGGTCTGATAAAGGCAGTGGAATATTCCACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

400

Amino Acids

43.96

Weight (kDa)

9.65

Isoelectric Point (pI)

32.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 81 - 193 6.8e-21 Protein of unknown function (DUF568)
Cytochrom_B561 PF03188 244 - 337 6.5e-09 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04850
fragaria_vesca FvH4_6g41290
malus_domestica MD09G1120800.v1.1 MD17G1111800.v1.1
prunus_persica Prupe.3G202700_v2.0.a1
pyrus_communis pycom09g04540 pycom17g10370
rosa_chinensis RchiOBHm_Chr2g0156851
rosa_laevigata RLG00000020946
rosa_multiflora Rmu_co8482377.1_g000001 Rmu_sc0008149.1_g000001 Rmu_ssc0000286.1_g000024
rosa_roxburghii Rroxscaffold_2G00092670
rosa_rugosa Rorug02G0456600
rosa_samantha Rh2AG522200 Rh2BG535600 Rh2CG507100 Rh2DG544600
rosa_wichuraiana Rw2G043120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 323
AatII GACGTC 1 cut(s) 582
AccB1I GGYRCC 1 cut(s) 428
AccB7I CCANNNNNTGG 1 cut(s) 135
AccII CGCG 3 cut(s) 236, 253, 501
AciI CCGC 9 cut(s) 234, 236, 355, 387, 402, 432, 499, 501, 597
AclWI GGATC 1 cut(s) 748
AcsI RAATTY 2 cut(s) 926, 1102
AcuI CTGAAG 1 cut(s) 869
AcvI CACGTG 2 cut(s) 490, 732
AcyI GRCGYC 2 cut(s) 429, 579
AdeI CACNNNGTG 2 cut(s) 490, 827
AfaI GTAC 6 cut(s) 67, 250, 340, 534, 831, 938
AfiI CCNNNNNNNGG 4 cut(s) 135, 283, 284, 930
AflIII ACRYGT 3 cut(s) 251, 489, 709
AgsI TTSAA 3 cut(s) 159, 457, 1068
AhdI GACNNNNNGTC 1 cut(s) 583
AjiI CACGTC 1 cut(s) 712
AjnI CCWGG 2 cut(s) 823, 1002
AjuI GAANNNNNNNTTGG 2 cut(s) 1146, 1178
AluBI AGCT 5 cut(s) 460, 481, 695, 808, 853
AluI AGCT 5 cut(s) 460, 481, 695, 808, 853
Alw21I GWGCWC 1 cut(s) 61
AlwI GGATC 1 cut(s) 748
AlwNI CAGNNNCTG 1 cut(s) 892
AoxI GGCC 2 cut(s) 286, 908
ApeKI GCWGC 3 cut(s) 749, 863, 1025
ApoI RAATTY 2 cut(s) 926, 1102
AseI ATTAAT 1 cut(s) 648
Asp700I GAANNNNTTC 1 cut(s) 998
AspLEI GCGC 2 cut(s) 431, 898
AspS9I GGNCC 3 cut(s) 286, 725, 909
AsuHPI GGTGA 5 cut(s) 97, 813, 824, 1027, 1111
AvaII GGWCC 1 cut(s) 725
BaeGI GKGCMC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 428
BanII GRGCYC 1 cut(s) 507
BbrPI CACGTG 2 cut(s) 490, 732
Bbv12I GWGCWC 1 cut(s) 61
BbvI GCAGC 3 cut(s) 736, 850, 1037
BccI CCATC 3 cut(s) 419, 686, 1012
BceAI ACGGC 2 cut(s) 415, 419
BciT130I CCWGG 2 cut(s) 825, 1004
BfaI CTAG 3 cut(s) 84, 410, 854
BfmI CTRYAG 1 cut(s) 1120
BfoI RGCGCY 2 cut(s) 432, 899
BisI GCNGC 5 cut(s) 403, 432, 750, 864, 1026
BlsI GCNGC 5 cut(s) 404, 433, 751, 865, 1027
BmcAI AGTACT 1 cut(s) 938
Bme1390I CCNGG 2 cut(s) 825, 1004
Bme18I GGWCC 1 cut(s) 725
BmeRI GACNNNNNGTC 1 cut(s) 583
BmgBI CACGTC 1 cut(s) 712
BmgT120I GGNCC 3 cut(s) 286, 725, 909
BmiI GGNNCC 4 cut(s) 184, 430, 497, 727
BmrFI CCNGG 2 cut(s) 825, 1004
BmsI GCATC 2 cut(s) 228, 651
BsaAI YACGTR 2 cut(s) 490, 732
BsaHI GRCGYC 2 cut(s) 429, 579
BsaJI CCNNGG 5 cut(s) 234, 499, 514, 637, 1003
BsaXI ACNNNNNCTCC 6 cut(s) 542, 545, 572, 575, 1141, 1171
Bsc4I CCNNNNNNNGG 4 cut(s) 135, 283, 284, 930
Bse1I ACTGG 1 cut(s) 944
Bse3DI GCAATG 1 cut(s) 1070
BseBI CCWGG 2 cut(s) 825, 1004
BseDI CCNNGG 5 cut(s) 234, 499, 514, 637, 1003
BseGI GGATG 2 cut(s) 366, 380
BseLI CCNNNNNNNGG 4 cut(s) 135, 283, 284, 930
BseMI GCAATG 1 cut(s) 1070
BseMII CTCAG 2 cut(s) 640, 1136
BseNI ACTGG 1 cut(s) 944
BseRI GAGGAG 4 cut(s) 338, 550, 1151, 1162
BseSI GKGCMC 1 cut(s) 259
BseXI GCAGC 3 cut(s) 736, 850, 1037
BseYI CCCAGC 1 cut(s) 204
BsgI GTGCAG 1 cut(s) 827
Bsh1236I CGCG 3 cut(s) 236, 253, 501
BshFI GGCC 2 cut(s) 288, 910
BshNI GGYRCC 1 cut(s) 428
BsiHKAI GWGCWC 1 cut(s) 61
BsiSI CCGG 2 cut(s) 201, 907
BslFI GGGAC 2 cut(s) 711, 793
BslI CCNNNNNNNGG 4 cut(s) 135, 283, 284, 930
BsmFI GGGAC 2 cut(s) 711, 793
BsmI GAATGC 1 cut(s) 866
BsnI GGCC 2 cut(s) 288, 910
Bsp1286I GDGCHC 3 cut(s) 61, 259, 507
Bsp1407I TGTACA 1 cut(s) 829
Bsp143I GATC 2 cut(s) 629, 753
Bsp19I CCATGG 1 cut(s) 637
BspACI CCGC 9 cut(s) 234, 236, 355, 387, 402, 432, 499, 501, 597
BspANI GGCC 2 cut(s) 288, 910
BspCNI CTCAG 2 cut(s) 639, 1137
BspFNI CGCG 3 cut(s) 236, 253, 501
BspLI GGNNCC 4 cut(s) 184, 430, 497, 727
BspPI GGATC 1 cut(s) 748
BspQI GCTCTTC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 1070
BsrGI TGTACA 1 cut(s) 829
BsrI ACTGG 1 cut(s) 944
BssECI CCNNGG 5 cut(s) 234, 499, 514, 637, 1003
BssMI GATC 2 cut(s) 629, 753
BssNI GRCGYC 2 cut(s) 429, 579
BssT1I CCWWGG 2 cut(s) 514, 637
Bst2UI CCWGG 2 cut(s) 825, 1004
Bst4CI ACNGT 5 cut(s) 325, 418, 532, 762, 784
Bst6I CTCTTC 3 cut(s) 11, 17, 26
BstACI GRCGYC 2 cut(s) 429, 579
BstAUI TGTACA 1 cut(s) 829
BstBAI YACGTR 2 cut(s) 490, 732
BstC8I GCNNGC 3 cut(s) 255, 503, 697
BstDEI CTNAG 4 cut(s) 626, 1041, 1131, 1145
BstDSI CCRYGG 3 cut(s) 234, 499, 637
BstF5I GGATG 2 cut(s) 366, 380
BstFNI CGCG 3 cut(s) 236, 253, 501
BstH2I RGCGCY 2 cut(s) 432, 899
BstHHI GCGC 2 cut(s) 431, 898
BstKTI GATC 2 cut(s) 632, 756
BstMBI GATC 2 cut(s) 629, 753
BstMWI GCNNNNNNNGC 5 cut(s) 131, 263, 692, 850, 1046
BstNI CCWGG 2 cut(s) 825, 1004
BstSCI CCNGG 2 cut(s) 823, 1002
BstSFI CTRYAG 1 cut(s) 1120
BstSLI GKGCMC 1 cut(s) 259
BstUI CGCG 3 cut(s) 236, 253, 501
BstV1I GCAGC 3 cut(s) 736, 850, 1037
BstXI CCANNNNNNTGG 2 cut(s) 764, 962
BsuRI GGCC 2 cut(s) 288, 910
BtgI CCRYGG 3 cut(s) 234, 499, 637
BtrI CACGTC 1 cut(s) 712
BtsCI GGATG 2 cut(s) 366, 380
BtsI GCAGTG 2 cut(s) 693, 1189
BtsIMutI CAGTG 2 cut(s) 693, 1189
Cac8I GCNNGC 3 cut(s) 255, 503, 697
CaiI CAGNNNCTG 1 cut(s) 892
CfoI GCGC 2 cut(s) 431, 898
Cfr13I GGNCC 3 cut(s) 286, 725, 909
Cfr42I CCGCGG 2 cut(s) 237, 502
CsiI ACCWGGT 1 cut(s) 823
Csp6I GTAC 6 cut(s) 66, 249, 339, 533, 830, 937
CviAII CATG 3 cut(s) 135, 422, 638
CviQI GTAC 6 cut(s) 66, 249, 339, 533, 830, 937
DdeI CTNAG 4 cut(s) 626, 1041, 1131, 1145
DinI GGCGCC 1 cut(s) 430
DpnI GATC 2 cut(s) 631, 755
DpnII GATC 2 cut(s) 629, 753
DraIII CACNNNGTG 2 cut(s) 490, 827
DrdI GACNNNNNNGTC 1 cut(s) 323
DriI GACNNNNNGTC 1 cut(s) 583
DseDI GACNNNNNNGTC 1 cut(s) 323
Eam1104I CTCTTC 3 cut(s) 11, 17, 26
Eam1105I GACNNNNNGTC 1 cut(s) 583
EarI CTCTTC 3 cut(s) 11, 17, 26
EciI GGCGGA 1 cut(s) 376
Eco130I CCWWGG 2 cut(s) 514, 637
Eco24I GRGCYC 1 cut(s) 507
Eco47I GGWCC 1 cut(s) 725
Eco57I CTGAAG 1 cut(s) 869
Eco72I CACGTG 2 cut(s) 490, 732
EcoRI GAATTC 1 cut(s) 1102
EcoRII CCWGG 2 cut(s) 823, 1002
EcoT14I CCWWGG 2 cut(s) 514, 637
EcoT38I GRGCYC 1 cut(s) 507
EgeI GGCGCC 1 cut(s) 430
EheI GGCGCC 1 cut(s) 430
ErhI CCWWGG 2 cut(s) 514, 637
FaeI CATG 3 cut(s) 138, 425, 641
FaqI GGGAC 2 cut(s) 711, 793
FatI CATG 3 cut(s) 134, 421, 637
FauI CCCGC 2 cut(s) 362, 494
Fnu4HI GCNGC 5 cut(s) 403, 432, 750, 864, 1026
FokI GGATG 2 cut(s) 353, 367
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 5 cut(s) 403, 432, 750, 864, 1026
FspBI CTAG 3 cut(s) 84, 410, 854
GlaI GCGC 2 cut(s) 430, 897
GluI GCNGC 5 cut(s) 403, 432, 750, 864, 1026
GsaI CCCAGC 1 cut(s) 208
HaeII RGCGCY 2 cut(s) 432, 899
HaeIII GGCC 2 cut(s) 288, 910
HapII CCGG 2 cut(s) 201, 907
HhaI GCGC 2 cut(s) 431, 898
Hin1I GRCGYC 2 cut(s) 429, 579
Hin1II CATG 3 cut(s) 138, 425, 641
Hin6I GCGC 2 cut(s) 429, 896
HinP1I GCGC 2 cut(s) 429, 896
HindIII AAGCTT 1 cut(s) 806
HinfI GANTC 1 cut(s) 889
HpaII CCGG 2 cut(s) 201, 907
HphI GGTGA 5 cut(s) 97, 813, 824, 1027, 1111
Hpy166II GTNNAC 3 cut(s) 535, 745, 830
Hpy188I TCNGA 7 cut(s) 182, 621, 629, 683, 888, 1161, 1174
Hpy188III TCNNGA 3 cut(s) 272, 362, 931
Hpy8I GTNNAC 3 cut(s) 535, 745, 830
HpyAV CCTTC 4 cut(s) 196, 207, 713, 1148
HpyCH4III ACNGT 5 cut(s) 325, 418, 532, 762, 784
HpyCH4IV ACGT 8 cut(s) 230, 337, 489, 510, 579, 711, 731, 741
HpyCH4V TGCA 2 cut(s) 844, 866
HpyF10VI GCNNNNNNNGC 5 cut(s) 131, 263, 692, 850, 1046
HpyF3I CTNAG 4 cut(s) 626, 1041, 1131, 1145
HpySE526I ACGT 8 cut(s) 230, 337, 489, 510, 579, 711, 731, 741
Hsp92I GRCGYC 2 cut(s) 429, 579
Hsp92II CATG 3 cut(s) 138, 425, 641
HspAI GCGC 2 cut(s) 429, 896
KasI GGCGCC 1 cut(s) 428
KspI CCGCGG 2 cut(s) 237, 502
Kzo9I GATC 2 cut(s) 629, 753
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 3 cut(s) 486, 683, 1022
Lsp1109I GCAGC 3 cut(s) 736, 850, 1037
LweI GCATC 2 cut(s) 228, 651
MabI ACCWGGT 1 cut(s) 823
MaeI CTAG 3 cut(s) 84, 410, 854
MaeII ACGT 8 cut(s) 230, 337, 489, 510, 579, 711, 731, 741
MaeIII GTNAC 4 cut(s) 46, 672, 688, 819
MalI GATC 2 cut(s) 631, 755
MboI GATC 2 cut(s) 629, 753
MboII GAAGA 3 cut(s) 4, 13, 169
MfeI CAATTG 1 cut(s) 1198
MhlI GDGCHC 3 cut(s) 61, 259, 507
MluCI AATT 5 cut(s) 154, 261, 926, 1102, 1198
MluI ACGCGT 1 cut(s) 251
Mly113I GGCGCC 1 cut(s) 429
MlyI GAGTC 1 cut(s) 883
MmeI TCCRAC 3 cut(s) 358, 781, 943
MroXI GAANNNNTTC 1 cut(s) 998
MseI TTAA 1 cut(s) 648
MspA1I CMGCKG 2 cut(s) 236, 501
MspI CCGG 2 cut(s) 201, 907
MspR9I CCNGG 2 cut(s) 825, 1004
MunI CAATTG 1 cut(s) 1198
Mva1269I GAATGC 1 cut(s) 866
MvaI CCWGG 2 cut(s) 825, 1004
MvnI CGCG 3 cut(s) 236, 253, 501
MwoI GCNNNNNNNGC 5 cut(s) 131, 263, 692, 850, 1046
NarI GGCGCC 1 cut(s) 429
NcoI CCATGG 1 cut(s) 637
NdeII GATC 2 cut(s) 629, 753
NlaIII CATG 3 cut(s) 138, 425, 641
NlaIV GGNNCC 4 cut(s) 184, 430, 497, 727
NmuCI GTSAC 3 cut(s) 46, 688, 819
PciSI GCTCTTC 1 cut(s) 11
PcsI WCGNNNNNNNCGW 1 cut(s) 703
PctI GAATGC 1 cut(s) 866
PdmI GAANNNNTTC 1 cut(s) 998
PflMI CCANNNNNTGG 1 cut(s) 135
PkrI GCNGC 5 cut(s) 404, 433, 751, 865, 1027
PleI GAGTC 1 cut(s) 883
PluTI GGCGCC 1 cut(s) 432
PmaCI CACGTG 2 cut(s) 490, 732
PmlI CACGTG 2 cut(s) 490, 732
PpsI GAGTC 1 cut(s) 883
Ppu21I YACGTR 2 cut(s) 490, 732
PshBI ATTAAT 1 cut(s) 648
Psp6I CCWGG 2 cut(s) 823, 1002
PspCI CACGTG 2 cut(s) 490, 732
PspFI CCCAGC 1 cut(s) 204
PspGI CCWGG 2 cut(s) 823, 1002
PspN4I GGNNCC 4 cut(s) 184, 430, 497, 727
PspPI GGNCC 3 cut(s) 286, 725, 909
PstNI CAGNNNCTG 1 cut(s) 892
RsaI GTAC 6 cut(s) 67, 250, 340, 534, 831, 938
RsaNI GTAC 6 cut(s) 66, 249, 339, 533, 830, 937
SacII CCGCGG 2 cut(s) 237, 502
SapI GCTCTTC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 648
SatI GCNGC 5 cut(s) 403, 432, 750, 864, 1026
Sau3AI GATC 2 cut(s) 629, 753
Sau96I GGNCC 3 cut(s) 286, 725, 909
ScaI AGTACT 1 cut(s) 938
SchI GAGTC 1 cut(s) 883
ScrFI CCNGG 2 cut(s) 825, 1004
SduI GDGCHC 3 cut(s) 61, 259, 507
SexAI ACCWGGT 1 cut(s) 823
SfaNI GCATC 2 cut(s) 228, 651
SfcI CTRYAG 1 cut(s) 1120
SfoI GGCGCC 1 cut(s) 430
Sfr303I CCGCGG 2 cut(s) 237, 502
SgrBI CCGCGG 2 cut(s) 237, 502
SinI GGWCC 1 cut(s) 725
Sse9I AATT 5 cut(s) 154, 261, 926, 1102, 1198
SsiI CCGC 9 cut(s) 234, 236, 355, 387, 402, 432, 499, 501, 597
SspDI GGCGCC 1 cut(s) 428
SspI AATATT 1 cut(s) 1191
SspMI CTAG 3 cut(s) 84, 410, 854
StyD4I CCNGG 2 cut(s) 823, 1002
StyI CCWWGG 2 cut(s) 514, 637
TaaI ACNGT 5 cut(s) 325, 418, 532, 762, 784
TaiI ACGT 8 cut(s) 233, 340, 492, 513, 582, 714, 734, 744
TaqI TCGA 3 cut(s) 165, 363, 706
TaqII GACCGA 1 cut(s) 713
TasI AATT 5 cut(s) 154, 261, 926, 1102, 1198
TatI WGTACW 2 cut(s) 829, 936
TauI GCSGC 2 cut(s) 405, 434
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TscAI CASTG 2 cut(s) 693, 1189
TseFI GTSAC 3 cut(s) 46, 688, 819
TseI GCWGC 3 cut(s) 749, 863, 1025
Tsp45I GTSAC 3 cut(s) 46, 688, 819
TspDTI ATGAA 2 cut(s) 178, 369
TspRI CASTG 2 cut(s) 693, 1189
Van91I CCANNNNNTGG 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 725
VspI ATTAAT 1 cut(s) 648
XapI RAATTY 2 cut(s) 926, 1102
XcmI CCANNNNNNNNNTGG 1 cut(s) 959
XmnI GAANNNNTTC 1 cut(s) 998
XspI CTAG 3 cut(s) 84, 410, 854
ZraI GACGTC 1 cut(s) 580
ZrmI AGTACT 1 cut(s) 938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.