pycom09g04540

Protein of unknown function (DUF568)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
3359141 .. 3360463
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g04540.1

Sequence Viewer

Length: 1323 bp
ATGATGATCAATTACATCAACCTCAATACCAAACACTTAAATGTTAACAAAAGCTTGCCAACCAATTCTACATCCCTAGCTTCCACTCTCTTTGATATTCAACCCTTCTTCCCAGCCATCAATATGCTCTTCCTCCTGTCCCTTTTCCTTCTCTTTTCCTTTCCCTATGTCACATTTTCTGCCCATTGCACCACCACCACCTCCACTAAAACCTTTCAAAAATGCATCACACTCCCTACCCAACAAGCCTCCATAGCATGGACTTTCCATCCCCACAATGCCACCCTAGACCTTGTTTTCTATGGTACTTTCATATCCCCTTCCGGGTGGGTCGGGTGGGGCATCAACCCGACCTCTGCGGAAATGACTGGCACACGTGCTCTGATCGCCTTTCCGGACCCTAGCACCGGTCAAATAGTCGTCCTCCCTTACCTCTTAGACCCAACCACAAAGCTCCAAAAACGCCCTCTCCTCTCCCGCCCTCTTGACATCCACATTCTCTCCTCGTCTGCCACCCTATACGGTGGAAAATTGGCCACCGTCCACGGCGGCGCTTCCATCCAAATATTCGCTACATTGAAACTCACGCCGAACAAGACAAAGCTCCACCACGTGTGGAACCGTGGTCTCTACGTCCAAGGCTACTCGCCGACCATACACCCAACCACCGCTAACGACCTTTCATCCATAACAACTTTTGATGTCATGTCAGGCACTACGGCCACACACCACTCCAACATTGGCACACTCAGAACAGTGCATGGCATCATGAACGCCATTGCATGGGGCATCATGCTTCCCATTGGAGCAGTGCTTGCACGCTACCTCAGGCACATACAATCATTAGGTCCCACATGGTTCTATGTGCACGCTGGGGTCCAACTGTTTGCCTTTTTCCTAGGGACTGTAGGGTTTGCTATTGGGATTAGGCTTGGGGATATGTCACCTGGGGTCCAGTATGGGCTCCACAGGAAGCTAGGGTTTGCTGCATTTTGCTTGGGAGCGCTTCAAACCCTAGCACTACTGTTTCGACCTAAAACTACAAACAAGTACAGGAAGTACTGGAAATCTTACCACCATTTAGTTGGGTATGCATGTGTGGTGCTGGGTGTGGTGAATGTTTTCCAAGGTTTTGAGGTGATGGGAGAAGGGAGGTCTTTTGCGAAACTGGTTTATTGCTTGGGATTGTCTACACTGATTGGGGTTTGCATTGCTTTGGAGGTGAATTCTTGGGTGGTTTTTTGTAGAAAATCAAAGGAGGAGAAGATGAGGAGGGAAGGTATATTTGGAACGTCGGATAAAGGCAGCGGAATCTTCAGATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

441

Amino Acids

48.53

Weight (kDa)

9.77

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 122 - 234 2.4e-21 Protein of unknown function (DUF568)
Cytochrom_B561 PF03188 283 - 378 1.3e-07 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012003)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 258, 783
AccI GTMKAC 1 cut(s) 1190
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 5 cut(s) 359, 478, 549, 669, 1308
AcoI YGGCCR 2 cut(s) 534, 720
AcsI RAATTY 1 cut(s) 1225
AcuI CTGAAG 1 cut(s) 1300
AcvI CACGTG 2 cut(s) 377, 613
AdeI CACNNNGTG 1 cut(s) 613
AfaI GTAC 3 cut(s) 307, 1052, 1061
AfeI AGCGCT 1 cut(s) 1005
AfiI CCNNNNNNNGG 4 cut(s) 258, 324, 407, 783
AflIII ACRYGT 2 cut(s) 374, 612
AgeI ACCGGT 1 cut(s) 407
AgsI TTSAA 4 cut(s) 101, 218, 580, 1010
AjnI CCWGG 1 cut(s) 946
AjuI GAANNNNNNNTTGG 2 cut(s) 1269, 1301
AluBI AGCT 5 cut(s) 54, 80, 454, 604, 976
AluI AGCT 5 cut(s) 54, 80, 454, 604, 976
Alw21I GWGCWC 2 cut(s) 382, 870
Alw26I GTCTC 1 cut(s) 632
Alw44I GTGCAC 1 cut(s) 866
Aor13HI TCCGGA 1 cut(s) 394
Aor51HI AGCGCT 1 cut(s) 1005
AoxI GGCC 2 cut(s) 534, 720
ApaLI GTGCAC 1 cut(s) 866
ApeKI GCWGC 2 cut(s) 986, 1305
ApoI RAATTY 1 cut(s) 1225
AsiGI ACCGGT 1 cut(s) 407
Asp700I GAANNNNTTC 1 cut(s) 1121
AspA2I CCTAGG 1 cut(s) 898
AspLEI GCGC 2 cut(s) 554, 1006
AspS9I GGNCC 4 cut(s) 397, 848, 877, 952
AsuC2I CCSGG 1 cut(s) 325
AsuHPI GGTGA 4 cut(s) 936, 1126, 1150, 1234
AvaII GGWCC 4 cut(s) 397, 848, 877, 952
AvrII CCTAGG 1 cut(s) 898
AxyI CCTNAGG 1 cut(s) 827
BaeGI GKGCMC 1 cut(s) 870
BalI TGGCCA 1 cut(s) 536
BanII GRGCYC 1 cut(s) 966
BbrPI CACGTG 2 cut(s) 377, 613
Bbv12I GWGCWC 2 cut(s) 382, 870
BbvI GCAGC 2 cut(s) 973, 1317
BccI CCATC 4 cut(s) 125, 276, 566, 1135
BceAI ACGGC 2 cut(s) 562, 735
BciT130I CCWGG 1 cut(s) 948
BclI TGATCA 1 cut(s) 6
BcnI CCSGG 1 cut(s) 325
BcoDI GTCTC 1 cut(s) 632
BfaI CTAG 6 cut(s) 77, 287, 402, 899, 977, 1016
BfmI CTRYAG 1 cut(s) 906
BfoI RGCGCY 2 cut(s) 555, 1007
BisI GCNGC 3 cut(s) 550, 987, 1306
BlnI CCTAGG 1 cut(s) 898
BlsI GCNGC 3 cut(s) 551, 988, 1307
BmcAI AGTACT 1 cut(s) 1061
Bme1390I CCNGG 2 cut(s) 325, 948
Bme18I GGWCC 4 cut(s) 397, 848, 877, 952
BmgT120I GGNCC 4 cut(s) 397, 848, 877, 952
BmiI GGNNCC 6 cut(s) 399, 620, 850, 878, 953, 965
BmrFI CCNGG 2 cut(s) 325, 948
BmsI GCATC 4 cut(s) 234, 351, 774, 798
BpuMI CCSGG 1 cut(s) 325
BsaAI YACGTR 2 cut(s) 377, 613
BsaI GGTCTC 1 cut(s) 632
BsaJI CCNNGG 6 cut(s) 544, 622, 637, 898, 947, 1126
BsaWI WCCGGW 2 cut(s) 394, 407
BsaXI ACNNNNNCTCC 6 cut(s) 453, 483, 485, 515, 1264, 1294
Bsc4I CCNNNNNNNGG 4 cut(s) 258, 324, 407, 783
Bse118I RCCGGY 1 cut(s) 407
Bse1I ACTGG 4 cut(s) 373, 955, 1067, 1173
Bse21I CCTNAGG 1 cut(s) 827
Bse3DI GCAATG 3 cut(s) 184, 777, 1209
BseAI TCCGGA 1 cut(s) 394
BseBI CCWGG 1 cut(s) 948
BseDI CCNNGG 6 cut(s) 544, 622, 637, 898, 947, 1126
BseGI GGATG 5 cut(s) 71, 268, 489, 558, 683
BseLI CCNNNNNNNGG 4 cut(s) 258, 324, 407, 783
BseMI GCAATG 3 cut(s) 184, 777, 1209
BseMII CTCAG 2 cut(s) 763, 841
BseNI ACTGG 4 cut(s) 373, 955, 1067, 1173
BseRI GAGGAG 4 cut(s) 461, 493, 1274, 1285
BseSI GKGCMC 1 cut(s) 870
BseXI GCAGC 2 cut(s) 973, 1317
BseYI CCCAGC 3 cut(s) 112, 872, 1105
BshFI GGCC 2 cut(s) 536, 722
BshTI ACCGGT 1 cut(s) 407
BsiHKAI GWGCWC 2 cut(s) 382, 870
BsiSI CCGG 3 cut(s) 324, 395, 408
BslFI GGGAC 3 cut(s) 124, 834, 916
BslI CCNNNNNNNGG 4 cut(s) 258, 324, 407, 783
BsmAI GTCTC 1 cut(s) 632
BsmFI GGGAC 3 cut(s) 124, 834, 916
BsnI GGCC 2 cut(s) 536, 722
Bso31I GGTCTC 1 cut(s) 632
Bsp1286I GDGCHC 3 cut(s) 382, 870, 966
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 2 cut(s) 6, 384
BspACI CCGC 5 cut(s) 359, 478, 549, 669, 1308
BspANI GGCC 2 cut(s) 536, 722
BspCNI CTCAG 2 cut(s) 762, 840
BspEI TCCGGA 1 cut(s) 394
BspHI TCATGA 1 cut(s) 768
BspLI GGNNCC 6 cut(s) 399, 620, 850, 878, 953, 965
BspQI GCTCTTC 1 cut(s) 134
BspTNI GGTCTC 1 cut(s) 632
BsrDI GCAATG 3 cut(s) 184, 777, 1209
BsrFI RCCGGY 1 cut(s) 407
BsrI ACTGG 4 cut(s) 373, 955, 1067, 1173
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 6 cut(s) 544, 622, 637, 898, 947, 1126
BssMI GATC 2 cut(s) 6, 384
BssT1I CCWWGG 3 cut(s) 637, 898, 1126
Bst2UI CCWGG 1 cut(s) 948
Bst4CI ACNGT 7 cut(s) 524, 541, 623, 757, 885, 907, 1026
Bst6I CTCTTC 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 815
BstBAI YACGTR 2 cut(s) 377, 613
BstC8I GCNNGC 4 cut(s) 56, 816, 820, 870
BstDEI CTNAG 3 cut(s) 436, 749, 827
BstDSI CCRYGG 2 cut(s) 544, 622
BstF5I GGATG 5 cut(s) 71, 268, 489, 558, 683
BstH2I RGCGCY 2 cut(s) 555, 1007
BstHHI GCGC 2 cut(s) 554, 1006
BstKTI GATC 2 cut(s) 9, 387
BstMAI GTCTC 1 cut(s) 632
BstMBI GATC 2 cut(s) 6, 384
BstMWI GCNNNNNNNGC 3 cut(s) 254, 386, 815
BstNI CCWGG 1 cut(s) 948
BstNSI RCATGY 1 cut(s) 1098
BstSCI CCNGG 2 cut(s) 323, 946
BstSFI CTRYAG 1 cut(s) 906
BstSLI GKGCMC 1 cut(s) 870
BstV1I GCAGC 2 cut(s) 973, 1317
BstXI CCANNNNNNTGG 1 cut(s) 1085
Bsu36I CCTNAGG 1 cut(s) 827
BsuRI GGCC 2 cut(s) 536, 722
BtgI CCRYGG 2 cut(s) 544, 622
BtsCI GGATG 5 cut(s) 71, 268, 489, 558, 683
BtsI GCAGTG 1 cut(s) 816
BtsIMutI CAGTG 3 cut(s) 762, 816, 1193
Cac8I GCNNGC 4 cut(s) 56, 816, 820, 870
CciI TCATGA 1 cut(s) 768
CfoI GCGC 2 cut(s) 554, 1006
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 4 cut(s) 397, 848, 877, 952
Csp6I GTAC 3 cut(s) 306, 1051, 1060
CspAI ACCGGT 1 cut(s) 407
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
CviAII CATG 8 cut(s) 258, 706, 761, 769, 783, 793, 855, 1095
CviQI GTAC 3 cut(s) 306, 1051, 1060
DdeI CTNAG 3 cut(s) 436, 749, 827
DpnI GATC 2 cut(s) 8, 386
DpnII GATC 2 cut(s) 6, 384
DraIII CACNNNGTG 1 cut(s) 613
EaeI YGGCCR 2 cut(s) 534, 720
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco130I CCWWGG 3 cut(s) 637, 898, 1126
Eco24I GRGCYC 1 cut(s) 966
Eco31I GGTCTC 1 cut(s) 632
Eco47I GGWCC 4 cut(s) 397, 848, 877, 952
Eco47III AGCGCT 1 cut(s) 1005
Eco57I CTGAAG 1 cut(s) 1300
Eco72I CACGTG 2 cut(s) 377, 613
Eco81I CCTNAGG 1 cut(s) 827
EcoO109I RGGNCCY 1 cut(s) 848
EcoRI GAATTC 1 cut(s) 1225
EcoRII CCWGG 1 cut(s) 946
EcoT14I CCWWGG 3 cut(s) 637, 898, 1126
EcoT22I ATGCAT 2 cut(s) 227, 1096
EcoT38I GRGCYC 1 cut(s) 966
ErhI CCWWGG 3 cut(s) 637, 898, 1126
FaeI CATG 8 cut(s) 261, 709, 764, 772, 786, 796, 858, 1098
FaqI GGGAC 3 cut(s) 124, 834, 916
FatI CATG 8 cut(s) 257, 705, 760, 768, 782, 792, 854, 1094
FauI CCCGC 1 cut(s) 485
FbaI TGATCA 1 cut(s) 6
FblI GTMKAC 1 cut(s) 1190
Fnu4HI GCNGC 3 cut(s) 550, 987, 1306
FokI GGATG 5 cut(s) 58, 255, 476, 545, 670
FriOI GRGCYC 1 cut(s) 966
Fsp4HI GCNGC 3 cut(s) 550, 987, 1306
FspBI CTAG 6 cut(s) 77, 287, 402, 899, 977, 1016
GlaI GCGC 2 cut(s) 553, 1005
GluI GCNGC 3 cut(s) 550, 987, 1306
GsaI CCCAGC 3 cut(s) 116, 876, 1109
HaeII RGCGCY 2 cut(s) 555, 1007
HaeIII GGCC 2 cut(s) 536, 722
HapII CCGG 3 cut(s) 324, 395, 408
HhaI GCGC 2 cut(s) 554, 1006
Hin1II CATG 8 cut(s) 261, 709, 764, 772, 786, 796, 858, 1098
Hin6I GCGC 2 cut(s) 552, 1004
HinP1I GCGC 2 cut(s) 552, 1004
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 1 cut(s) 1311
HpaI GTTAAC 1 cut(s) 46
HpaII CCGG 3 cut(s) 324, 395, 408
HphI GGTGA 4 cut(s) 936, 1126, 1150, 1234
Hpy166II GTNNAC 4 cut(s) 46, 544, 868, 1191
Hpy188I TCNGA 4 cut(s) 384, 752, 1297, 1319
Hpy188III TCNNGA 3 cut(s) 395, 485, 769
Hpy8I GTNNAC 4 cut(s) 46, 544, 868, 1191
Hpy99I CGWCG 1 cut(s) 1297
HpyAV CCTTC 5 cut(s) 115, 158, 330, 1142, 1271
HpyCH4III ACNGT 7 cut(s) 524, 541, 623, 757, 885, 907, 1026
HpyCH4IV ACGT 4 cut(s) 376, 612, 633, 1292
HpyCH4V TGCA 9 cut(s) 189, 225, 760, 782, 818, 868, 989, 1094, 1209
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 386, 815
HpyF3I CTNAG 3 cut(s) 436, 749, 827
HpySE526I ACGT 4 cut(s) 376, 612, 633, 1292
Hsp92II CATG 8 cut(s) 261, 709, 764, 772, 786, 796, 858, 1098
HspAI GCGC 2 cut(s) 552, 1004
Kpn2I TCCGGA 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 6
KspAI GTTAAC 1 cut(s) 46
Kzo9I GATC 2 cut(s) 6, 384
LguI GCTCTTC 1 cut(s) 134
LmnI GCTCC 5 cut(s) 459, 609, 806, 969, 1001
Lsp1109I GCAGC 2 cut(s) 973, 1317
LweI GCATC 4 cut(s) 234, 351, 774, 798
MaeI CTAG 6 cut(s) 77, 287, 402, 899, 977, 1016
MaeII ACGT 4 cut(s) 376, 612, 633, 1292
MaeIII GTNAC 2 cut(s) 169, 942
MalI GATC 2 cut(s) 8, 386
MboI GATC 2 cut(s) 6, 384
MboII GAAGA 4 cut(s) 100, 121, 1276, 1306
MhlI GDGCHC 3 cut(s) 382, 870, 966
MlsI TGGCCA 1 cut(s) 536
MluCI AATT 4 cut(s) 10, 64, 530, 1225
MluNI TGGCCA 1 cut(s) 536
MmeI TCCRAC 3 cut(s) 759, 904, 1275
Mox20I TGGCCA 1 cut(s) 536
Mph1103I ATGCAT 2 cut(s) 227, 1096
MroI TCCGGA 1 cut(s) 394
MroXI GAANNNNTTC 1 cut(s) 1121
MscI TGGCCA 1 cut(s) 536
MseI TTAA 2 cut(s) 38, 45
MslI CAYNNNNRTG 2 cut(s) 39, 122
Msp20I TGGCCA 1 cut(s) 536
MspA1I CMGCKG 1 cut(s) 1308
MspI CCGG 3 cut(s) 324, 395, 408
MspR9I CCNGG 2 cut(s) 325, 948
MvaI CCWGG 1 cut(s) 948
MwoI GCNNNNNNNGC 3 cut(s) 254, 386, 815
NciI CCSGG 1 cut(s) 325
NdeII GATC 2 cut(s) 6, 384
NlaIII CATG 8 cut(s) 261, 709, 764, 772, 786, 796, 858, 1098
NlaIV GGNNCC 6 cut(s) 399, 620, 850, 878, 953, 965
NmuCI GTSAC 2 cut(s) 169, 942
NsiI ATGCAT 2 cut(s) 227, 1096
NspI RCATGY 1 cut(s) 1098
PagI TCATGA 1 cut(s) 768
PciSI GCTCTTC 1 cut(s) 134
PdmI GAANNNNTTC 1 cut(s) 1121
PfeI GAWTC 1 cut(s) 1311
PflMI CCANNNNNTGG 2 cut(s) 258, 783
PinAI ACCGGT 1 cut(s) 407
PkrI GCNGC 3 cut(s) 551, 988, 1307
PmaCI CACGTG 2 cut(s) 377, 613
PmlI CACGTG 2 cut(s) 377, 613
Ppu21I YACGTR 2 cut(s) 377, 613
PpuMI RGGWCCY 1 cut(s) 848
Psp5II RGGWCCY 1 cut(s) 848
Psp6I CCWGG 1 cut(s) 946
PspCI CACGTG 2 cut(s) 377, 613
PspFI CCCAGC 3 cut(s) 112, 872, 1105
PspGI CCWGG 1 cut(s) 946
PspN4I GGNNCC 6 cut(s) 399, 620, 850, 878, 953, 965
PspPI GGNCC 4 cut(s) 397, 848, 877, 952
PspPPI RGGWCCY 1 cut(s) 848
RsaI GTAC 3 cut(s) 307, 1052, 1061
RsaNI GTAC 3 cut(s) 306, 1051, 1060
RseI CAYNNNNRTG 2 cut(s) 39, 122
SapI GCTCTTC 1 cut(s) 134
SaqAI TTAA 2 cut(s) 38, 45
SatI GCNGC 3 cut(s) 550, 987, 1306
Sau3AI GATC 2 cut(s) 6, 384
Sau96I GGNCC 4 cut(s) 397, 848, 877, 952
ScaI AGTACT 1 cut(s) 1061
ScrFI CCNGG 2 cut(s) 325, 948
SduI GDGCHC 3 cut(s) 382, 870, 966
SfaNI GCATC 4 cut(s) 234, 351, 774, 798
SfcI CTRYAG 1 cut(s) 906
SinI GGWCC 4 cut(s) 397, 848, 877, 952
SmiMI CAYNNNNRTG 2 cut(s) 39, 122
Sse9I AATT 4 cut(s) 10, 64, 530, 1225
SsiI CCGC 5 cut(s) 359, 478, 549, 669, 1308
SspI AATATT 1 cut(s) 567
SspMI CTAG 6 cut(s) 77, 287, 402, 899, 977, 1016
StyD4I CCNGG 2 cut(s) 323, 946
StyI CCWWGG 3 cut(s) 637, 898, 1126
TaaI ACNGT 7 cut(s) 524, 541, 623, 757, 885, 907, 1026
TaiI ACGT 4 cut(s) 379, 615, 636, 1295
TaqI TCGA 1 cut(s) 1030
TasI AATT 4 cut(s) 10, 64, 530, 1225
TatI WGTACW 2 cut(s) 1050, 1059
TauI GCSGC 1 cut(s) 552
TfiI GAWTC 1 cut(s) 1311
Tru1I TTAA 2 cut(s) 38, 45
Tru9I TTAA 2 cut(s) 38, 45
TscAI CASTG 3 cut(s) 762, 816, 1200
TseFI GTSAC 2 cut(s) 169, 942
TseI GCWGC 2 cut(s) 986, 1305
Tsp45I GTSAC 2 cut(s) 169, 942
TspDTI ATGAA 3 cut(s) 301, 672, 785
TspRI CASTG 3 cut(s) 762, 816, 1200
Van91I CCANNNNNTGG 2 cut(s) 258, 783
VneI GTGCAC 1 cut(s) 866
VpaK11BI GGWCC 4 cut(s) 397, 848, 877, 952
XapI RAATTY 1 cut(s) 1225
XceI RCATGY 1 cut(s) 1098
XcmI CCANNNNNNNNNTGG 2 cut(s) 737, 1082
XmaJI CCTAGG 1 cut(s) 898
XmiI GTMKAC 1 cut(s) 1190
XmnI GAANNNNTTC 1 cut(s) 1121
XspI CTAG 6 cut(s) 77, 287, 402, 899, 977, 1016
ZrmI AGTACT 1 cut(s) 1061
Zsp2I ATGCAT 2 cut(s) 227, 1096
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.