Rroxscaffold_2G00092670

Protein of unknown function (DUF568)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012003
Physical Location & Seq
Forward (+)
14186312 .. 14187274
963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00092670.1

Sequence Viewer

Length: 963 bp
ATGACAGGTACGCGTGCCCTAATTGCCTTTCCTGACCCTAACACGGGCCAAATAGTCCTACTACCTTACATCATAGACCCAACAGTCAAACTCCAACGTACCCCTCTCCTCTCCCGCCCTCTCGACATCCACCTCATTTCCTCCTCCGCCACCCTATACGGCGGCAAACTAGCCACCGTCCATGATGGTGCCGCTGTCCAAATCTACGCCACATTGAAGCTCACACCAAACAAGACAAAGCTCCACCACGTGTGGAACCGCGGGCTCTACGTCCAAGGCTACTCCCCAACCGTACACCCAACTAACCAAAATGACCTCTCCTCCATAACAACCTTTGACGTCAGGTCAGGCTCAACCGCCACACGCCACACTAACATTCTGACCCTCAGATCAGCCCATGGCATCATTAATGCTGTTTCTTGGGGGATAATGTTACCCATCGGAGCAGTGACAGCTCGCTACCTTCGGCACGTCCAATCACTCGGTCCCACGTGGTTCTACGTCCACGCTGCGATCCAACTGTTTGCTTTTGTGTTAGGGACGGTAGGGTTTGCTATTGGGGTCAAGCTTGGTGATATGTCACCTGGTGTACAATATAGTCTGCACAGGAAGCTAGGGTTCGCTGCATTCTGCTTGGGAGGGCTTCAGACTCTGGCGCTGTTGTTCCGGCCGAAGACTACAACCAAATTCAGGAAGTACTGGAAGTCTTACCACCATTTTGTTGGATATGCTTGTGTGGTGCTTGGGGTTGTGAATGTGTTCCAGGGTTTTGAGGTGATGGGAGCAGCAAGGTCTTATGCTAAGTTGGCTTATTGTTTGGGGCTTTCAACATTGCTTGGTGTTTGTATAGCATTGGAGGTGAATTCTTGGGTGGTGTTCTGTAGGAAATCTAAGGAGGAGAAACTGAGGAGGGAAGGTCTGATTGGAGGGTCTGATAAAGGCAGTGGAATATTCCACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

320

Amino Acids

35.03

Weight (kDa)

9.93

Isoelectric Point (pI)

31.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 1 - 113 4.9e-21 Protein of unknown function (DUF568)
Cytochrom_B561 PF03188 164 - 257 1.6e-09 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012003)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04850
fragaria_vesca FvH4_6g41290
malus_domestica MD09G1120800.v1.1 MD17G1111800.v1.1
prunus_persica Prupe.3G202700_v2.0.a1
pyrus_communis pycom09g04540 pycom17g10370
rosa_chinensis RchiOBHm_Chr2g0156851
rosa_laevigata RLG00000020946
rosa_multiflora Rmu_co8482377.1_g000001 Rmu_sc0008149.1_g000001 Rmu_ssc0000286.1_g000024
rosa_roxburghii Rroxscaffold_2G00092670
rosa_rugosa Rorug02G0456600
rosa_samantha Rh2AG522200 Rh2BG535600 Rh2CG507100 Rh2DG544600
rosa_wichuraiana Rw2G043120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
AatII GACGTC 1 cut(s) 342
AccB1I GGYRCC 1 cut(s) 188
AccII CGCG 2 cut(s) 13, 261
AciI CCGC 7 cut(s) 115, 147, 162, 192, 259, 261, 357
AclWI GGATC 1 cut(s) 508
AcoI YGGCCR 1 cut(s) 668
AcsI RAATTY 2 cut(s) 686, 862
AcuI CTGAAG 1 cut(s) 629
AcvI CACGTG 2 cut(s) 250, 492
AcyI GRCGYC 1 cut(s) 339
AdeI CACNNNGTG 2 cut(s) 250, 587
AfaI GTAC 5 cut(s) 10, 100, 294, 591, 698
AfiI CCNNNNNNNGG 3 cut(s) 43, 44, 690
AflIII ACRYGT 2 cut(s) 11, 249
AgsI TTSAA 2 cut(s) 217, 828
AhdI GACNNNNNGTC 1 cut(s) 343
AjiI CACGTC 1 cut(s) 472
AjnI CCWGG 2 cut(s) 583, 762
AjuI GAANNNNNNNTTGG 2 cut(s) 906, 938
AluBI AGCT 5 cut(s) 220, 241, 455, 568, 613
AluI AGCT 5 cut(s) 220, 241, 455, 568, 613
AlwI GGATC 1 cut(s) 508
AlwNI CAGNNNCTG 1 cut(s) 652
AoxI GGCC 2 cut(s) 46, 668
ApeKI GCWGC 3 cut(s) 509, 623, 785
ApoI RAATTY 2 cut(s) 686, 862
AseI ATTAAT 1 cut(s) 408
Asp700I GAANNNNTTC 1 cut(s) 758
AspLEI GCGC 1 cut(s) 658
AspS9I GGNCC 2 cut(s) 46, 485
AsuHPI GGTGA 4 cut(s) 573, 584, 787, 871
AvaII GGWCC 1 cut(s) 485
BaeGI GKGCMC 1 cut(s) 19
BanI GGYRCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 267
BbrPI CACGTG 2 cut(s) 250, 492
BbsI GAAGAC 1 cut(s) 680
BbvI GCAGC 3 cut(s) 496, 610, 797
BccI CCATC 3 cut(s) 179, 446, 772
BceAI ACGGC 1 cut(s) 175
BciT130I CCWGG 2 cut(s) 585, 764
BfaI CTAG 2 cut(s) 170, 614
BfmI CTRYAG 1 cut(s) 880
BfoI RGCGCY 1 cut(s) 659
BisI GCNGC 5 cut(s) 163, 192, 510, 624, 786
BlsI GCNGC 5 cut(s) 164, 193, 511, 625, 787
BmcAI AGTACT 1 cut(s) 698
Bme1390I CCNGG 2 cut(s) 585, 764
Bme18I GGWCC 1 cut(s) 485
BmeRI GACNNNNNGTC 1 cut(s) 343
BmgBI CACGTC 1 cut(s) 472
BmgT120I GGNCC 2 cut(s) 46, 485
BmiI GGNNCC 3 cut(s) 190, 257, 487
BmrFI CCNGG 2 cut(s) 585, 764
BmsI GCATC 1 cut(s) 411
BpiI GAAGAC 1 cut(s) 680
BsaAI YACGTR 2 cut(s) 250, 492
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 4 cut(s) 259, 274, 397, 763
BsaXI ACNNNNNCTCC 4 cut(s) 305, 335, 901, 931
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 44, 690
Bse1I ACTGG 1 cut(s) 704
Bse3DI GCAATG 1 cut(s) 830
BseBI CCWGG 2 cut(s) 585, 764
BseDI CCNNGG 4 cut(s) 259, 274, 397, 763
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 3 cut(s) 43, 44, 690
BseMI GCAATG 1 cut(s) 830
BseMII CTCAG 2 cut(s) 400, 896
BseNI ACTGG 1 cut(s) 704
BseRI GAGGAG 5 cut(s) 98, 133, 310, 911, 922
BseSI GKGCMC 1 cut(s) 19
BseX3I CGGCCG 1 cut(s) 668
BseXI GCAGC 3 cut(s) 496, 610, 797
BsgI GTGCAG 1 cut(s) 587
Bsh1236I CGCG 2 cut(s) 13, 261
Bsh1285I CGRYCG 1 cut(s) 671
BshFI GGCC 2 cut(s) 48, 670
BshNI GGYRCC 1 cut(s) 188
BsiEI CGRYCG 1 cut(s) 671
BsiSI CCGG 1 cut(s) 667
BslFI GGGAC 2 cut(s) 471, 553
BslI CCNNNNNNNGG 3 cut(s) 43, 44, 690
BsmFI GGGAC 2 cut(s) 471, 553
BsmI GAATGC 1 cut(s) 626
BsnI GGCC 2 cut(s) 48, 670
Bsp1286I GDGCHC 2 cut(s) 19, 267
Bsp1407I TGTACA 1 cut(s) 589
Bsp143I GATC 2 cut(s) 389, 513
Bsp19I CCATGG 1 cut(s) 397
BspACI CCGC 7 cut(s) 115, 147, 162, 192, 259, 261, 357
BspANI GGCC 2 cut(s) 48, 670
BspCNI CTCAG 2 cut(s) 399, 897
BspFNI CGCG 2 cut(s) 13, 261
BspLI GGNNCC 3 cut(s) 190, 257, 487
BspPI GGATC 1 cut(s) 508
BspT107I GGYRCC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 830
BsrGI TGTACA 1 cut(s) 589
BsrI ACTGG 1 cut(s) 704
BssECI CCNNGG 4 cut(s) 259, 274, 397, 763
BssMI GATC 2 cut(s) 389, 513
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 2 cut(s) 274, 397
Bst2UI CCWGG 2 cut(s) 585, 764
Bst4CI ACNGT 5 cut(s) 85, 178, 292, 522, 544
BstACI GRCGYC 1 cut(s) 339
BstAUI TGTACA 1 cut(s) 589
BstBAI YACGTR 2 cut(s) 250, 492
BstC8I GCNNGC 3 cut(s) 15, 263, 457
BstDEI CTNAG 4 cut(s) 386, 801, 891, 905
BstDSI CCRYGG 2 cut(s) 259, 397
BstF5I GGATG 1 cut(s) 126
BstFNI CGCG 2 cut(s) 13, 261
BstH2I RGCGCY 1 cut(s) 659
BstHHI GCGC 1 cut(s) 658
BstKTI GATC 2 cut(s) 392, 516
BstMBI GATC 2 cut(s) 389, 513
BstMCI CGRYCG 1 cut(s) 671
BstMWI GCNNNNNNNGC 4 cut(s) 23, 452, 610, 806
BstNI CCWGG 2 cut(s) 585, 764
BstSCI CCNGG 2 cut(s) 583, 762
BstSFI CTRYAG 1 cut(s) 880
BstSLI GKGCMC 1 cut(s) 19
BstUI CGCG 2 cut(s) 13, 261
BstV1I GCAGC 3 cut(s) 496, 610, 797
BstV2I GAAGAC 1 cut(s) 680
BstXI CCANNNNNNTGG 1 cut(s) 722
BstZI CGGCCG 1 cut(s) 668
BsuRI GGCC 2 cut(s) 48, 670
BtgI CCRYGG 2 cut(s) 259, 397
BtrI CACGTC 1 cut(s) 472
BtsCI GGATG 1 cut(s) 126
BtsI GCAGTG 2 cut(s) 453, 949
BtsIMutI CAGTG 2 cut(s) 453, 949
Cac8I GCNNGC 3 cut(s) 15, 263, 457
CaiI CAGNNNCTG 1 cut(s) 652
CfoI GCGC 1 cut(s) 658
Cfr13I GGNCC 2 cut(s) 46, 485
Cfr42I CCGCGG 1 cut(s) 262
CsiI ACCWGGT 1 cut(s) 583
Csp6I GTAC 5 cut(s) 9, 99, 293, 590, 697
CviAII CATG 2 cut(s) 182, 398
CviQI GTAC 5 cut(s) 9, 99, 293, 590, 697
DdeI CTNAG 4 cut(s) 386, 801, 891, 905
DpnI GATC 2 cut(s) 391, 515
DpnII GATC 2 cut(s) 389, 513
DraIII CACNNNGTG 2 cut(s) 250, 587
DrdI GACNNNNNNGTC 1 cut(s) 83
DriI GACNNNNNGTC 1 cut(s) 343
DseDI GACNNNNNNGTC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 668
EagI CGGCCG 1 cut(s) 668
Eam1105I GACNNNNNGTC 1 cut(s) 343
EciI GGCGGA 1 cut(s) 136
EclXI CGGCCG 1 cut(s) 668
Eco130I CCWWGG 2 cut(s) 274, 397
Eco24I GRGCYC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 485
Eco52I CGGCCG 1 cut(s) 668
Eco57I CTGAAG 1 cut(s) 629
Eco72I CACGTG 2 cut(s) 250, 492
EcoRI GAATTC 1 cut(s) 862
EcoRII CCWGG 2 cut(s) 583, 762
EcoT14I CCWWGG 2 cut(s) 274, 397
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 2 cut(s) 274, 397
FaeI CATG 2 cut(s) 185, 401
FaqI GGGAC 2 cut(s) 471, 553
FatI CATG 2 cut(s) 181, 397
FauI CCCGC 2 cut(s) 122, 254
Fnu4HI GCNGC 5 cut(s) 163, 192, 510, 624, 786
FokI GGATG 1 cut(s) 113
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 5 cut(s) 163, 192, 510, 624, 786
FspBI CTAG 2 cut(s) 170, 614
GlaI GCGC 1 cut(s) 657
GluI GCNGC 5 cut(s) 163, 192, 510, 624, 786
HaeII RGCGCY 1 cut(s) 659
HaeIII GGCC 2 cut(s) 48, 670
HapII CCGG 1 cut(s) 667
HhaI GCGC 1 cut(s) 658
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 2 cut(s) 185, 401
Hin6I GCGC 1 cut(s) 656
HinP1I GCGC 1 cut(s) 656
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 1 cut(s) 649
HpaII CCGG 1 cut(s) 667
HphI GGTGA 4 cut(s) 573, 584, 787, 871
Hpy166II GTNNAC 3 cut(s) 295, 505, 590
Hpy188I TCNGA 6 cut(s) 381, 389, 443, 648, 921, 934
Hpy188III TCNNGA 3 cut(s) 32, 122, 691
Hpy8I GTNNAC 3 cut(s) 295, 505, 590
HpyAV CCTTC 2 cut(s) 473, 908
HpyCH4III ACNGT 5 cut(s) 85, 178, 292, 522, 544
HpyCH4IV ACGT 7 cut(s) 97, 249, 270, 339, 471, 491, 501
HpyCH4V TGCA 2 cut(s) 604, 626
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 452, 610, 806
HpyF3I CTNAG 4 cut(s) 386, 801, 891, 905
HpySE526I ACGT 7 cut(s) 97, 249, 270, 339, 471, 491, 501
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 2 cut(s) 185, 401
HspAI GCGC 1 cut(s) 656
KspI CCGCGG 1 cut(s) 262
Kzo9I GATC 2 cut(s) 389, 513
LmnI GCTCC 3 cut(s) 246, 443, 782
Lsp1109I GCAGC 3 cut(s) 496, 610, 797
LweI GCATC 1 cut(s) 411
MabI ACCWGGT 1 cut(s) 583
MaeI CTAG 2 cut(s) 170, 614
MaeII ACGT 7 cut(s) 97, 249, 270, 339, 471, 491, 501
MaeIII GTNAC 3 cut(s) 432, 448, 579
MalI GATC 2 cut(s) 391, 515
MboI GATC 2 cut(s) 389, 513
MboII GAAGA 1 cut(s) 685
MfeI CAATTG 1 cut(s) 958
MhlI GDGCHC 2 cut(s) 19, 267
MluCI AATT 4 cut(s) 21, 686, 862, 958
MluI ACGCGT 1 cut(s) 11
MlyI GAGTC 1 cut(s) 643
MmeI TCCRAC 3 cut(s) 118, 541, 703
MroXI GAANNNNTTC 1 cut(s) 758
MseI TTAA 1 cut(s) 408
MslI CAYNNNNRTG 1 cut(s) 186
MspA1I CMGCKG 2 cut(s) 194, 261
MspI CCGG 1 cut(s) 667
MspR9I CCNGG 2 cut(s) 585, 764
MunI CAATTG 1 cut(s) 958
Mva1269I GAATGC 1 cut(s) 626
MvaI CCWGG 2 cut(s) 585, 764
MvnI CGCG 2 cut(s) 13, 261
MwoI GCNNNNNNNGC 4 cut(s) 23, 452, 610, 806
NcoI CCATGG 1 cut(s) 397
NdeII GATC 2 cut(s) 389, 513
NlaIII CATG 2 cut(s) 185, 401
NlaIV GGNNCC 3 cut(s) 190, 257, 487
NmuCI GTSAC 2 cut(s) 448, 579
PctI GAATGC 1 cut(s) 626
PdmI GAANNNNTTC 1 cut(s) 758
PkrI GCNGC 5 cut(s) 164, 193, 511, 625, 787
PleI GAGTC 1 cut(s) 643
PmaCI CACGTG 2 cut(s) 250, 492
PmlI CACGTG 2 cut(s) 250, 492
PpsI GAGTC 1 cut(s) 643
Ppu21I YACGTR 2 cut(s) 250, 492
PshBI ATTAAT 1 cut(s) 408
Psp6I CCWGG 2 cut(s) 583, 762
PspCI CACGTG 2 cut(s) 250, 492
PspGI CCWGG 2 cut(s) 583, 762
PspN4I GGNNCC 3 cut(s) 190, 257, 487
PspPI GGNCC 2 cut(s) 46, 485
PstNI CAGNNNCTG 1 cut(s) 652
RsaI GTAC 5 cut(s) 10, 100, 294, 591, 698
RsaNI GTAC 5 cut(s) 9, 99, 293, 590, 697
RseI CAYNNNNRTG 1 cut(s) 186
SacII CCGCGG 1 cut(s) 262
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 5 cut(s) 163, 192, 510, 624, 786
Sau3AI GATC 2 cut(s) 389, 513
Sau96I GGNCC 2 cut(s) 46, 485
ScaI AGTACT 1 cut(s) 698
SchI GAGTC 1 cut(s) 643
ScrFI CCNGG 2 cut(s) 585, 764
SduI GDGCHC 2 cut(s) 19, 267
SexAI ACCWGGT 1 cut(s) 583
SfaNI GCATC 1 cut(s) 411
SfcI CTRYAG 1 cut(s) 880
Sfr303I CCGCGG 1 cut(s) 262
SgrBI CCGCGG 1 cut(s) 262
SinI GGWCC 1 cut(s) 485
SmiMI CAYNNNNRTG 1 cut(s) 186
Sse9I AATT 4 cut(s) 21, 686, 862, 958
SsiI CCGC 7 cut(s) 115, 147, 162, 192, 259, 261, 357
SspI AATATT 1 cut(s) 951
SspMI CTAG 2 cut(s) 170, 614
StyD4I CCNGG 2 cut(s) 583, 762
StyI CCWWGG 2 cut(s) 274, 397
TaaI ACNGT 5 cut(s) 85, 178, 292, 522, 544
TaiI ACGT 7 cut(s) 100, 252, 273, 342, 474, 494, 504
TaqI TCGA 1 cut(s) 123
TaqII GACCGA 1 cut(s) 473
TasI AATT 4 cut(s) 21, 686, 862, 958
TatI WGTACW 2 cut(s) 589, 696
TauI GCSGC 2 cut(s) 165, 194
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 2 cut(s) 453, 949
TseFI GTSAC 2 cut(s) 448, 579
TseI GCWGC 3 cut(s) 509, 623, 785
Tsp45I GTSAC 2 cut(s) 448, 579
TspRI CASTG 2 cut(s) 453, 949
VpaK11BI GGWCC 1 cut(s) 485
VspI ATTAAT 1 cut(s) 408
XapI RAATTY 2 cut(s) 686, 862
XcmI CCANNNNNNNNNTGG 1 cut(s) 719
XmnI GAANNNNTTC 1 cut(s) 758
XspI CTAG 2 cut(s) 170, 614
ZraI GACGTC 1 cut(s) 340
ZrmI AGTACT 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.