Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011586

Physical Location & Seq

Genomic Coordinates Reverse (-)

33611827 .. 33612491

Gene Structure 665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43421.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAGTATCTTACATGATCACCACTGCTTCTTCATTAGCCATCTTATCTCAAGGTTAGCAGTAGTCTCCCTGATTGTCATGACGATATTGGCGCTCACCGTTTTCAAGCCTAAACAACCCGAGATCAGTGCCCGACCCGTCGGAGTCGAAAACATTCAGTACACACTCTTTCCAAATGTGACGCTAAATGTGACACTAAGCATGCTCGTCACGATAAATAATAAGAACTATGGAAGCTTTAGTTTCAAGAATGCGACGGCATATGTTACTTACCACGACACAGTTGTAGCCTTGGTTCCAATGGAGCATGCTTTTGTCCCTGCACGAGGGAAAATAAACATTACCACCTCTGTAGATCTTATGGGCGACAAGCTGATCTCAAACCCTCATTTCATGGAAGATGTCACTAGTGGGATTTTCAATTTGATCTCTACTGCTGATTTACATGGAAAAGTGACTGTGCTCAAGTTCGTGAAGTTTGGCGCTACGGCTTTTAGCACCTGTGACATCTCATTTTCCATAAAAACCCAGCAAATCGATTCTAAATGCAAATCCAAACTGAAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

190

Amino Acids

20.94

Weight (kDa)

9.15

Isoelectric Point (pI)

20.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011586)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43421
malus_domestica	MD17G1094400.v1.1
prunus_persica	Prupe.3G218800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159481 RchiOBHm_Chr2g0159781
rosa_laevigata	RLG00000021181
rosa_multiflora	Rmu_sc0002508.1_g000005 Rmu_sc0007710.1_g000001 Rmu_sc0016393.1_g000004
rosa_roxburghii	Rroxscaffold_2G00090240 Rroxscaffold_2G00090490
rosa_rugosa	Rorug02G0476000
rosa_samantha	Rh2AG543200 Rh2BG555900 Rh2BG558300 Rh2CG526200 Rh2CG528300 Rh2DG565300
rosa_wichuraiana	Rw2G044930 Rw2G045080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgsI	TTSAA	3 cut(s)	106, 247, 421
AhlI	ACTAGT	1 cut(s)	407
AluBI	AGCT	2 cut(s)	237, 373
AluI	AGCT	2 cut(s)	237, 373
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	1 cut(s)	70
Ama87I	CYCGRG	1 cut(s)	119
Asp700I	GAANNNNTTC	1 cut(s)	153
AspLEI	GCGC	2 cut(s)	94, 485
AsuHPI	GGTGA	2 cut(s)	11, 88
AvaI	CYCGRG	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	133
BauI	CACGAG	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	465
BccI	CCATC	1 cut(s)	48
BceAI	ACGGC	2 cut(s)	273, 504
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BclI	TGATCA	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	70
BcuI	ACTAGT	1 cut(s)	407
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	351
BfoI	RGCGCY	2 cut(s)	95, 486
BglII	AGATCT	1 cut(s)	355
BmeT110I	CYCGRG	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	297
BpuEI	CTTGAG	2 cut(s)	34, 449
Bsa29I	ATCGAT	1 cut(s)	537
BsaJI	CCNNGG	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
BseCI	ATCGAT	1 cut(s)	537
BseDI	CCNNGG	1 cut(s)	291
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	133
BseYI	CCCAGC	1 cut(s)	528
BsgI	GTGCAG	1 cut(s)	306
BshVI	ATCGAT	1 cut(s)	537
BsiHKAI	GWGCWC	1 cut(s)	465
BsiHKCI	CYCGRG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmAI	GTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	302
BsmI	GAATGC	1 cut(s)	256
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	133, 465
Bsp143I	GATC	5 cut(s)	16, 123, 355, 375, 426
BspDI	ATCGAT	1 cut(s)	537
BspHI	TCATGA	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	297
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	5 cut(s)	16, 123, 355, 375, 426
BssSI	CACGAG	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	324
Bst4CI	ACNGT	3 cut(s)	100, 283, 460
BstC8I	GCNNGC	2 cut(s)	203, 309
BstDEI	CTNAG	1 cut(s)	197
BstENI	CCTNNNNNAGG	1 cut(s)	324
BstH2I	RGCGCY	2 cut(s)	95, 486
BstHHI	GCGC	2 cut(s)	94, 485
BstKTI	GATC	5 cut(s)	19, 126, 358, 378, 429
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	5 cut(s)	16, 123, 355, 375, 426
BstNSI	RCATGY	2 cut(s)	205, 311
BstSFI	CTRYAG	1 cut(s)	351
BstSLI	GKGCMC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
Bsu15I	ATCGAT	1 cut(s)	537
BsuTUI	ATCGAT	1 cut(s)	537
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	22, 133
Cac8I	GCNNGC	2 cut(s)	203, 309
CciI	TCATGA	1 cut(s)	78
CfoI	GCGC	2 cut(s)	94, 485
ClaI	ATCGAT	1 cut(s)	537
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	6 cut(s)	14, 79, 202, 308, 394, 446
CviJI	RGCY	6 cut(s)	39, 109, 237, 290, 373, 491
CviKI_1	RGCY	6 cut(s)	39, 109, 237, 290, 373, 491
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	5 cut(s)	18, 125, 357, 377, 428
DpnII	GATC	5 cut(s)	16, 123, 355, 375, 426
Eco130I	CCWWGG	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	119
EcoNI	CCTNNNNNAGG	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	6 cut(s)	17, 82, 205, 311, 397, 449
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	6 cut(s)	13, 78, 201, 307, 393, 445
FauNDI	CATATG	1 cut(s)	262
FbaI	TGATCA	1 cut(s)	16
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	2 cut(s)	93, 484
GsaI	CCCAGC	1 cut(s)	532
HaeII	RGCGCY	2 cut(s)	95, 486
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	2 cut(s)	94, 485
Hin1II	CATG	6 cut(s)	17, 82, 205, 311, 397, 449
Hin6I	GCGC	2 cut(s)	92, 483
HinP1I	GCGC	2 cut(s)	92, 483
HindIII	AAGCTT	1 cut(s)	235
HinfI	GANTC	2 cut(s)	144, 539
HphI	GGTGA	2 cut(s)	11, 88
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	4 cut(s)	79, 211, 247, 472
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	2 cut(s)	143, 259
HpyCH4III	ACNGT	3 cut(s)	100, 283, 460
HpyCH4V	TGCA	2 cut(s)	323, 549
HpyF3I	CTNAG	1 cut(s)	197
Hsp92II	CATG	6 cut(s)	17, 82, 205, 311, 397, 449
HspAI	GCGC	2 cut(s)	92, 483
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	5 cut(s)	16, 123, 355, 375, 426
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	4 cut(s)	83, 333, 514, 542
MaeI	CTAG	1 cut(s)	408
MaeIII	GTNAC	7 cut(s)	178, 190, 208, 265, 403, 454, 503
MalI	GATC	5 cut(s)	18, 125, 357, 377, 428
MboI	GATC	5 cut(s)	16, 123, 355, 375, 426
MboII	GAAGA	2 cut(s)	22, 410
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	2 cut(s)	133, 465
MluCI	AATT	1 cut(s)	421
MlyI	GAGTC	1 cut(s)	153
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	3 cut(s)	320, 358, 396
MroXI	GAANNNNTTC	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	256
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	5 cut(s)	16, 123, 355, 375, 426
NlaIII	CATG	6 cut(s)	17, 82, 205, 311, 397, 449
NlaIV	GGNNCC	1 cut(s)	297
NmuCI	GTSAC	6 cut(s)	178, 190, 208, 403, 454, 503
NspI	RCATGY	2 cut(s)	205, 311
PaeI	GCATGC	2 cut(s)	205, 311
PagI	TCATGA	1 cut(s)	78
PctI	GAATGC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	539
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	528
PspN4I	GGNNCC	1 cut(s)	297
PsrI	GAACNNNNNNTAC	2 cut(s)	279, 311
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
Sau3AI	GATC	5 cut(s)	16, 123, 355, 375, 426
SchI	GAGTC	1 cut(s)	153
SduI	GDGCHC	2 cut(s)	133, 465
SetI	ASST	5 cut(s)	56, 239, 350, 375, 503
SfcI	CTRYAG	1 cut(s)	351
SmlI	CTYRAG	2 cut(s)	49, 464
SmoI	CTYRAG	2 cut(s)	49, 464
SpeI	ACTAGT	1 cut(s)	407
SphI	GCATGC	2 cut(s)	205, 311
Sse9I	AATT	1 cut(s)	421
SspMI	CTAG	1 cut(s)	408
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	3 cut(s)	100, 283, 460
TaqI	TCGA	2 cut(s)	147, 537
TasI	AATT	1 cut(s)	421
TatI	WGTACW	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	539
TscAI	CASTG	2 cut(s)	29, 133
TseFI	GTSAC	6 cut(s)	178, 190, 208, 403, 454, 503
Tsp45I	GTSAC	6 cut(s)	178, 190, 208, 403, 454, 503
TspDTI	ATGAA	2 cut(s)	22, 382
TspRI	CASTG	2 cut(s)	29, 133
XagI	CCTNNNNNAGG	1 cut(s)	324
XceI	RCATGY	2 cut(s)	205, 311
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.