Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0011586

Physical Location & Seq

Genomic Coordinates Forward (+)

70102796 .. 70103816

Gene Structure 1021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG526200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGACTAGTGCCAGAAGTCCGAGCAGAGGTCTCAAAATTTGTTGCCTTGTTTCTGCTATTTTCTTAGTAATAGTCCTCGTCGTCATGACGATATTGGCACTCACCGTTTTCAAGCCTAAACGACCTGAGATCAATGCCCGACCCGTTGGCCTTGAAAACATTCAATATACACTCTTTCCGAATGTGACACTAAATGTGACGCTAAGCATGCTCGTCACGATAAATAATAGGAATTACGGAAGTTTTAGTTTCAAGAACGCCACGGCATATGTTACTTATCACGATACAGTTGTAGGCTTGGTTCCGATGGAGCATGCCTTTGTCCCTGCACGAGGGAAAATAAACATTACCACCTCTGTGGATCTTATGGGCGACAAGTTGATTTCAAACCCTCATTTCATGGAAGATGTGAATACTGGGATATTCAATTTGATCTCGACTGCTGATTTACATGGGAAAGTGACTGTGCTCAAGTTCATGAAGTTTGGCGCTACGGCTTTTAGCACATGCGACATCTCATTTTCCATAAAGAGCGAGCAAATTGATTCTAAATGCAAATCCAAACTCAAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

191

Amino Acids

21.06

Weight (kDa)

9.46

Isoelectric Point (pI)

22.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011586)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43421
malus_domestica	MD17G1094400.v1.1
prunus_persica	Prupe.3G218800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159481 RchiOBHm_Chr2g0159781
rosa_laevigata	RLG00000021181
rosa_multiflora	Rmu_sc0002508.1_g000005 Rmu_sc0007710.1_g000001 Rmu_sc0016393.1_g000004
rosa_roxburghii	Rroxscaffold_2G00090240 Rroxscaffold_2G00090490
rosa_rugosa	Rorug02G0476000
rosa_samantha	Rh2AG543200 Rh2BG555900 Rh2BG558300 Rh2CG526200 Rh2CG528300 Rh2DG565300
rosa_wichuraiana	Rw2G044930 Rw2G045080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	36
AfiI	CCNNNNNNNGG	2 cut(s)	26, 332
AgsI	TTSAA	6 cut(s)	112, 155, 164, 253, 387, 427
AhlI	ACTAGT	1 cut(s)	5
AleI	CACNNNNGTG	1 cut(s)	356
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	1 cut(s)	369
AoxI	GGCC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	491
AsuHPI	GGTGA	1 cut(s)	94
BaeI	ACNNNNGTAYC	2 cut(s)	276, 309
BauI	CACGAG	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	471
BccI	CCATC	1 cut(s)	301
BceAI	ACGGC	2 cut(s)	279, 510
BcoDI	GTCTC	1 cut(s)	35
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	492
BlpI	GCTNAGC	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	426
BmuI	ACTGGG	1 cut(s)	426
Bpu1102I	GCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	455
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 332
Bse1I	ACTGG	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	26, 332
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	421
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	471
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	26, 332
BsmAI	GTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp143I	GATC	3 cut(s)	129, 361, 432
Bsp1720I	GCTNAGC	1 cut(s)	203
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	1 cut(s)	118
BspHI	TCATGA	2 cut(s)	84, 477
BspLI	GGNNCC	1 cut(s)	303
BspPI	GGATC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	3 cut(s)	129, 361, 432
BssSI	CACGAG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	330
Bst4CI	ACNGT	3 cut(s)	106, 289, 466
BstC8I	GCNNGC	3 cut(s)	209, 315, 536
BstDEI	CTNAG	3 cut(s)	64, 126, 203
BstDSI	CCRYGG	1 cut(s)	261
BstENI	CCTNNNNNAGG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	492
BstHHI	GCGC	1 cut(s)	491
BstKTI	GATC	3 cut(s)	132, 364, 435
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	3 cut(s)	129, 361, 432
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstNSI	RCATGY	3 cut(s)	211, 317, 510
BstX2I	RGATCY	1 cut(s)	361
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	261
Cac8I	GCNNGC	3 cut(s)	209, 315, 536
CciI	TCATGA	2 cut(s)	84, 477
CfoI	GCGC	1 cut(s)	491
CseI	GACGC	1 cut(s)	208
CviAII	CATG	7 cut(s)	85, 208, 314, 400, 452, 478, 507
CviJI	RGCY	4 cut(s)	115, 150, 297, 497
CviKI_1	RGCY	4 cut(s)	115, 150, 297, 497
DdeI	CTNAG	3 cut(s)	64, 126, 203
DpnI	GATC	3 cut(s)	131, 363, 434
DpnII	GATC	3 cut(s)	129, 361, 432
Eco31I	GGTCTC	1 cut(s)	35
EcoNI	CCTNNNNNAGG	1 cut(s)	330
FaeI	CATG	7 cut(s)	88, 211, 317, 403, 455, 481, 510
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	7 cut(s)	84, 207, 313, 399, 451, 477, 506
FauNDI	CATATG	1 cut(s)	268
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	1 cut(s)	490
HaeII	RGCGCY	1 cut(s)	492
HaeIII	GGCC	1 cut(s)	150
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	1 cut(s)	491
Hin1II	CATG	7 cut(s)	88, 211, 317, 403, 455, 481, 510
Hin6I	GCGC	1 cut(s)	489
HinP1I	GCGC	1 cut(s)	489
HinfI	GANTC	1 cut(s)	545
HphI	GGTGA	1 cut(s)	94
Hpy188I	TCNGA	3 cut(s)	21, 180, 306
Hpy188III	TCNNGA	6 cut(s)	85, 217, 253, 281, 436, 478
Hpy99I	CGWCG	1 cut(s)	83
HpyCH4III	ACNGT	3 cut(s)	106, 289, 466
HpyCH4V	TGCA	2 cut(s)	329, 555
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
HpyF3I	CTNAG	3 cut(s)	64, 126, 203
Hsp92II	CATG	7 cut(s)	88, 211, 317, 403, 455, 481, 510
HspAI	GCGC	1 cut(s)	489
Kzo9I	GATC	3 cut(s)	129, 361, 432
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	4 cut(s)	25, 138, 339, 402
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	5 cut(s)	184, 196, 214, 271, 460
MalI	GATC	3 cut(s)	131, 363, 434
MboI	GATC	3 cut(s)	129, 361, 432
MboII	GAAGA	1 cut(s)	416
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	4 cut(s)	36, 232, 427, 540
MnlI	CCTC	5 cut(s)	20, 86, 326, 364, 402
MroXI	GAANNNNTTC	1 cut(s)	159
MslI	CAYNNNNRTG	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	208
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	3 cut(s)	129, 361, 432
NlaIII	CATG	7 cut(s)	88, 211, 317, 403, 455, 481, 510
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	4 cut(s)	184, 196, 214, 460
NspI	RCATGY	3 cut(s)	211, 317, 510
OliI	CACNNNNGTG	1 cut(s)	356
PaeI	GCATGC	2 cut(s)	211, 317
PagI	TCATGA	2 cut(s)	84, 477
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	545
PspN4I	GGNNCC	1 cut(s)	303
PsrI	GAACNNNNNNTAC	2 cut(s)	285, 317
PsuI	RGATCY	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	356
Sau3AI	GATC	3 cut(s)	129, 361, 432
SduI	GDGCHC	1 cut(s)	471
SetI	ASST	3 cut(s)	31, 127, 356
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
SpeI	ACTAGT	1 cut(s)	5
SphI	GCATGC	2 cut(s)	211, 317
Sse9I	AATT	4 cut(s)	36, 232, 427, 540
SspMI	CTAG	1 cut(s)	6
TaaI	ACNGT	3 cut(s)	106, 289, 466
TaqI	TCGA	1 cut(s)	437
TasI	AATT	4 cut(s)	36, 232, 427, 540
TfiI	GAWTC	1 cut(s)	545
TseFI	GTSAC	4 cut(s)	184, 196, 214, 460
Tsp45I	GTSAC	4 cut(s)	184, 196, 214, 460
TspDTI	ATGAA	3 cut(s)	388, 466, 494
TspGWI	ACGGA	1 cut(s)	252
XagI	CCTNNNNNAGG	1 cut(s)	330
XapI	RAATTY	1 cut(s)	36
XceI	RCATGY	3 cut(s)	211, 317, 510
XmnI	GAANNNNTTC	1 cut(s)	159
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.