Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011586

Physical Location & Seq

Genomic Coordinates Reverse (-)

12236722 .. 12237944

Gene Structure 1223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00090490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAGAGCTGTGAAAGTGACGAAGGTGTTGAAAGCTTTTTGGTCGTTGTCCGGCGAAGGAACCCAGATATGACTAGTGCCAGAAGTCCGAGCAGAGGTCTCAAAATCTGCTGCCTTGTTACTGCTATTTTCTTAGTAATAGTCTTCGTCGTCATGACGATATTGGCACTCACTGTTTTCAAGCCTAAACGACCCGAGATCAATGCCCGACCCGTTGGCCTTGAAAACATTCAATATACACTCTTTCCGAATGTGACACTAAATGTGACGTTAAGCATGCTTGTCACGATAAATAATAGGAATTATGGAAGTTTTAGTTTCAAGAATGCCACGGCATATGTTACTTATCACGACACAGTTGTAGGCTTGGTTCCGATGGAGCATGCCTTTGTCCCTGCACGAGGGAAAATAAACATTACCACCTCTGTGGATCTTATGGGCGACAAGTTGATTTCAAACCCTCATTTCATGGAAGATGTGAATACTGGGATTTTTAATTTGATCTCGACTGCTGATTTACATGGGAAAGTGACTGTGCTCAAGTTCATGAAGTTTGGCGCTACTGCTTTTAGCACATGCGACATCTCATTTTCCGTAAAGAGCGAGCAAATTGATTCTAAGTGCAAATCCAAACTCAAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

214

Amino Acids

23.73

Weight (kDa)

8.98

Isoelectric Point (pI)

30.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011586)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43421
malus_domestica	MD17G1094400.v1.1
prunus_persica	Prupe.3G218800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159481 RchiOBHm_Chr2g0159781
rosa_laevigata	RLG00000021181
rosa_multiflora	Rmu_sc0002508.1_g000005 Rmu_sc0007710.1_g000001 Rmu_sc0016393.1_g000004
rosa_roxburghii	Rroxscaffold_2G00090240 Rroxscaffold_2G00090490
rosa_rugosa	Rorug02G0476000
rosa_samantha	Rh2AG543200 Rh2BG555900 Rh2BG558300 Rh2CG526200 Rh2CG528300 Rh2DG565300
rosa_wichuraiana	Rw2G044930 Rw2G045080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	438
AfiI	CCNNNNNNNGG	2 cut(s)	95, 401
AgsI	TTSAA	6 cut(s)	32, 181, 224, 233, 322, 456
AhlI	ACTAGT	1 cut(s)	74
AleI	CACNNNNGTG	1 cut(s)	425
AluBI	AGCT	2 cut(s)	9, 36
AluI	AGCT	2 cut(s)	9, 36
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	438
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	1 cut(s)	111
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	1 cut(s)	560
AvaI	CYCGRG	1 cut(s)	194
BauI	CACGAG	1 cut(s)	399
BbsI	GAAGAC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	1 cut(s)	370
BceAI	ACGGC	1 cut(s)	348
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BcoDI	GTCTC	1 cut(s)	104
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	561
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
BmeT110I	CYCGRG	1 cut(s)	194
BmiI	GGNNCC	2 cut(s)	62, 372
BmrI	ACTGGG	1 cut(s)	495
BmuI	ACTGGG	1 cut(s)	495
BpiI	GAAGAC	1 cut(s)	136
BpuEI	CTTGAG	1 cut(s)	524
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 401
Bse1I	ACTGG	1 cut(s)	490
BseDI	CCNNGG	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	95, 401
BseNI	ACTGG	1 cut(s)	490
BseXI	GCAGC	1 cut(s)	98
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	540
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	2 cut(s)	95, 401
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	331
BsnI	GGCC	1 cut(s)	219
Bso31I	GGTCTC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp143I	GATC	3 cut(s)	198, 430, 501
BspANI	GGCC	1 cut(s)	219
BspHI	TCATGA	2 cut(s)	153, 546
BspLI	GGNNCC	2 cut(s)	62, 372
BspPI	GGATC	1 cut(s)	438
BspTNI	GGTCTC	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	3 cut(s)	198, 430, 501
BssSI	CACGAG	1 cut(s)	399
Bst2BI	CACGAG	1 cut(s)	399
Bst4CI	ACNGT	3 cut(s)	175, 358, 535
BstC8I	GCNNGC	3 cut(s)	278, 384, 605
BstDEI	CTNAG	2 cut(s)	133, 618
BstDSI	CCRYGG	1 cut(s)	330
BstENI	CCTNNNNNAGG	1 cut(s)	399
BstH2I	RGCGCY	1 cut(s)	561
BstHHI	GCGC	1 cut(s)	560
BstKTI	GATC	3 cut(s)	201, 433, 504
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	3 cut(s)	198, 430, 501
BstNSI	RCATGY	3 cut(s)	280, 386, 579
BstV1I	GCAGC	1 cut(s)	98
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	430
BstXI	CCANNNNNNTGG	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	3 cut(s)	278, 384, 605
CciI	TCATGA	2 cut(s)	153, 546
CfoI	GCGC	1 cut(s)	560
CviAII	CATG	7 cut(s)	154, 277, 383, 469, 521, 547, 576
CviJI	RGCY	5 cut(s)	9, 36, 184, 219, 366
CviKI_1	RGCY	5 cut(s)	9, 36, 184, 219, 366
DdeI	CTNAG	2 cut(s)	133, 618
DpnI	GATC	3 cut(s)	200, 432, 503
DpnII	GATC	3 cut(s)	198, 430, 501
Eco31I	GGTCTC	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	194
EcoNI	CCTNNNNNAGG	1 cut(s)	399
FaeI	CATG	7 cut(s)	157, 280, 386, 472, 524, 550, 579
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	7 cut(s)	153, 276, 382, 468, 520, 546, 575
FauNDI	CATATG	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	559
GluI	GCNGC	1 cut(s)	112
HaeII	RGCGCY	1 cut(s)	561
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	1 cut(s)	52
HhaI	GCGC	1 cut(s)	560
Hin1II	CATG	7 cut(s)	157, 280, 386, 472, 524, 550, 579
Hin6I	GCGC	1 cut(s)	558
HinP1I	GCGC	1 cut(s)	558
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	1 cut(s)	614
HpaII	CCGG	1 cut(s)	52
Hpy188I	TCNGA	3 cut(s)	90, 249, 375
Hpy188III	TCNNGA	6 cut(s)	154, 286, 322, 350, 505, 547
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	17, 51
HpyCH4III	ACNGT	3 cut(s)	175, 358, 535
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	2 cut(s)	398, 624
HpyF3I	CTNAG	2 cut(s)	133, 618
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	7 cut(s)	157, 280, 386, 472, 524, 550, 579
HspAI	GCGC	1 cut(s)	558
Kzo9I	GATC	3 cut(s)	198, 430, 501
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	5 cut(s)	65, 78, 94, 408, 471
Lsp1109I	GCAGC	1 cut(s)	98
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	7 cut(s)	17, 118, 253, 265, 283, 340, 529
MalI	GATC	3 cut(s)	200, 432, 503
MboI	GATC	3 cut(s)	198, 430, 501
MboII	GAAGA	2 cut(s)	136, 485
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	540
MluCI	AATT	3 cut(s)	301, 496, 609
MnlI	CCTC	4 cut(s)	89, 395, 433, 471
MroXI	GAANNNNTTC	1 cut(s)	228
MseI	TTAA	2 cut(s)	272, 495
MslI	CAYNNNNRTG	1 cut(s)	425
MspI	CCGG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	331
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	3 cut(s)	198, 430, 501
NlaIII	CATG	7 cut(s)	157, 280, 386, 472, 524, 550, 579
NlaIV	GGNNCC	2 cut(s)	62, 372
NmuCI	GTSAC	5 cut(s)	17, 253, 265, 283, 529
NspI	RCATGY	3 cut(s)	280, 386, 579
OliI	CACNNNNGTG	1 cut(s)	425
PaeI	GCATGC	2 cut(s)	280, 386
PagI	TCATGA	2 cut(s)	153, 546
PctI	GAATGC	1 cut(s)	331
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	614
PkrI	GCNGC	1 cut(s)	113
PspN4I	GGNNCC	2 cut(s)	62, 372
PsrI	GAACNNNNNNTAC	2 cut(s)	354, 386
PsuI	RGATCY	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	425
SaqAI	TTAA	2 cut(s)	272, 495
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	3 cut(s)	198, 430, 501
SduI	GDGCHC	1 cut(s)	540
SetI	ASST	6 cut(s)	11, 28, 38, 100, 272, 425
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
SpeI	ACTAGT	1 cut(s)	74
SphI	GCATGC	2 cut(s)	280, 386
Sse9I	AATT	3 cut(s)	301, 496, 609
SspMI	CTAG	1 cut(s)	75
TaaI	ACNGT	3 cut(s)	175, 358, 535
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	1 cut(s)	506
TasI	AATT	3 cut(s)	301, 496, 609
TfiI	GAWTC	1 cut(s)	614
Tru1I	TTAA	2 cut(s)	272, 495
Tru9I	TTAA	2 cut(s)	272, 495
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	5 cut(s)	17, 253, 265, 283, 529
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	5 cut(s)	17, 253, 265, 283, 529
TspDTI	ATGAA	3 cut(s)	457, 535, 563
TspGWI	ACGGA	1 cut(s)	583
TspRI	CASTG	1 cut(s)	178
XagI	CCTNNNNNAGG	1 cut(s)	399
XceI	RCATGY	3 cut(s)	280, 386, 579
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.