Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011586

Physical Location & Seq

Genomic Coordinates Reverse (-)

60715224 .. 60719069

Gene Structure 3846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0476000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGACAAGTCACAGAAGAAGCAAGTCTACTTGTTCTACTGCGCCGAATGCGAAGACCTTGCTCGCCAGGTCGCTTCTCAGTCAGACCTCATTACTCTCCAGACCATCAAATGGAGGAACTTTGATGATGGGTTTCCAAACATTTTCATCAACAATGCACAAGAACTTCGAGGCCAACATGTTGCCTTTCTTGCGTCCTTCAGCTCCCAAGGAGTTATCTTTGAGCAGCTATCTGTAATATATGCACTCCCCAAGCTGTTTGTTGCATCCTTCTCTTTAGTATTGCCTTTCTTCCCAACCGGTTCCTTTGAACGAATGGAAGAAGAAGGGGATGTTGCGACTGCATTTACCATGGCGAGAATGTTGTCAAATATTCCCATATCAAAAGGTGGCCCAACCAGTTTAGTCATTTATGACATACACGCTTTACAGGAAAGATTTTACTTTGGGGACCATGTTTTGCCTTTGTTTGAGACTGGAATCCCTCTCTTAAAGGAACGGCTCCACCAGCTTCCTGACTCTAATAAGATTGTTGTGGCATTTCCTGACGATGGAGCTTGGAAGCGATTTCACAAGCAGTTGGATCATTTTCCCATGGTTGTCTGTAATAAGGTTCGTGAAGGTGATAAGAGGATAGTTCGAATCAAGGAGGGAAATCCTGCAGGGTTTCATGTAGTCATTGTTGATGACTTGGTTCAATCTGGAGGCACCTTAATCGAGTGCCAGAAAGTTTTGGCAGCTCATGGTGCAGCCAAGGTTAGTGCTTATGTCACCCATGGAGTATTTCCTAAGCGCTCGTGGGAGCGTTTCACTCACAAGAATGGAGAGGGACTGTTTGCCTACTTTTGGATCACAGATTCCTGCCCACTTACTGTCAAAGCCGTAGAAAATAAAGCACCCTTTGAGATCTTAAGTCTTGCAGGATCCATTGCTGATGCTCTACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

315

Amino Acids

35.35

Weight (kDa)

6.37

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran_N	PF13793	10 - 124	4.4e-07	N-terminal domain of ribose phosphate pyrophosphokinase
Pribosyltran	PF00156	209 - 259	2.2e-08	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011586)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43421
malus_domestica	MD17G1094400.v1.1
prunus_persica	Prupe.3G218800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159481 RchiOBHm_Chr2g0159781
rosa_laevigata	RLG00000021181
rosa_multiflora	Rmu_sc0002508.1_g000005 Rmu_sc0007710.1_g000001 Rmu_sc0016393.1_g000004
rosa_roxburghii	Rroxscaffold_2G00090240 Rroxscaffold_2G00090490
rosa_rugosa	Rorug02G0476000
rosa_samantha	Rh2AG543200 Rh2BG555900 Rh2BG558300 Rh2CG526200 Rh2CG528300 Rh2DG565300
rosa_wichuraiana	Rw2G044930 Rw2G045080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	707
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	27
AclWI	GGATC	4 cut(s)	591, 857, 918, 931
AcuI	CTGAAG	1 cut(s)	184
AfeI	AGCGCT	1 cut(s)	794
AfiI	CCNNNNNNNGG	3 cut(s)	111, 551, 846
AflII	CTTAAG	1 cut(s)	910
AflIII	ACRYGT	1 cut(s)	178
AgeI	ACCGGT	1 cut(s)	299
AgsI	TTSAA	2 cut(s)	311, 698
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	6 cut(s)	204, 229, 256, 511, 557, 740
AluI	AGCT	6 cut(s)	204, 229, 256, 511, 557, 740
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	4 cut(s)	591, 857, 918, 931
Aor51HI	AGCGCT	1 cut(s)	794
AoxI	GGCC	2 cut(s)	172, 391
ApeKI	GCWGC	3 cut(s)	226, 737, 749
AsiGI	ACCGGT	1 cut(s)	299
AspLEI	GCGC	2 cut(s)	44, 795
AspS9I	GGNCC	2 cut(s)	392, 451
AsuHPI	GGTGA	2 cut(s)	635, 763
AsuII	TTCGAA	1 cut(s)	640
AvaII	GGWCC	1 cut(s)	451
BamHI	GGATCC	1 cut(s)	923
BanI	GGYRCC	1 cut(s)	707
BarI	GAAGNNNNNNTAC	2 cut(s)	11, 43
BauI	CACGAG	1 cut(s)	796
BbsI	GAAGAC	1 cut(s)	60
BbvI	GCAGC	3 cut(s)	238, 749, 761
BccI	CCATC	3 cut(s)	113, 122, 545
BceAI	ACGGC	2 cut(s)	515, 866
BcgI	CGANNNNNNTGC	4 cut(s)	41, 75, 697, 731
BciT130I	CCWGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	467
BfmI	CTRYAG	1 cut(s)	660
BfoI	RGCGCY	1 cut(s)	796
BfrI	CTTAAG	1 cut(s)	910
BglII	AGATCT	1 cut(s)	906
BisI	GCNGC	3 cut(s)	227, 738, 750
BlsI	GCNGC	3 cut(s)	228, 739, 751
Bme1390I	CCNGG	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	2 cut(s)	392, 451
BmiI	GGNNCC	5 cut(s)	304, 452, 503, 709, 925
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	2 cut(s)	275, 925
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	2 cut(s)	83, 723
Bpu10I	CCTNAGC	1 cut(s)	789
Bpu14I	TTCGAA	1 cut(s)	640
BsaJI	CCNNGG	5 cut(s)	208, 351, 594, 753, 775
BsaWI	WCCGGW	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 551, 846
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	2 cut(s)	399, 481
Bse3DI	GCAATG	1 cut(s)	927
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	5 cut(s)	208, 351, 594, 753, 775
BseGI	GGATG	2 cut(s)	266, 337
BseLI	CCNNNNNNNGG	3 cut(s)	111, 551, 846
BseMI	GCAATG	1 cut(s)	927
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	2 cut(s)	399, 481
BseXI	GCAGC	3 cut(s)	238, 749, 761
BsgI	GTGCAG	1 cut(s)	768
BshFI	GGCC	2 cut(s)	174, 393
BshNI	GGYRCC	1 cut(s)	707
BshTI	ACCGGT	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	300
BslFI	GGGAC	2 cut(s)	464, 843
BslI	CCNNNNNNNGG	3 cut(s)	111, 551, 846
BsmAI	GTCTC	1 cut(s)	467
BsmFI	GGGAC	2 cut(s)	464, 843
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	2 cut(s)	174, 393
Bsp119I	TTCGAA	1 cut(s)	640
Bsp143I	GATC	4 cut(s)	583, 849, 906, 923
Bsp19I	CCATGG	3 cut(s)	351, 594, 775
BspANI	GGCC	2 cut(s)	174, 393
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	5 cut(s)	304, 452, 503, 709, 925
BspMAI	CTGCAG	1 cut(s)	664
BspPI	GGATC	4 cut(s)	591, 857, 918, 931
BspT104I	TTCGAA	1 cut(s)	640
BspT107I	GGYRCC	1 cut(s)	707
BspTI	CTTAAG	1 cut(s)	910
BsrDI	GCAATG	1 cut(s)	927
BsrFI	RCCGGY	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	399, 481
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	5 cut(s)	208, 351, 594, 753, 775
BssMI	GATC	4 cut(s)	583, 849, 906, 923
BssSI	CACGAG	1 cut(s)	796
BssT1I	CCWWGG	5 cut(s)	208, 351, 594, 753, 775
Bst2BI	CACGAG	1 cut(s)	796
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	2 cut(s)	834, 874
BstAFI	CTTAAG	1 cut(s)	910
BstBI	TTCGAA	1 cut(s)	640
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	78, 789
BstDSI	CCRYGG	3 cut(s)	351, 594, 775
BstF5I	GGATG	2 cut(s)	266, 337
BstH2I	RGCGCY	1 cut(s)	796
BstHHI	GCGC	2 cut(s)	44, 795
BstKTI	GATC	4 cut(s)	586, 852, 909, 926
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	4 cut(s)	583, 849, 906, 923
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 191, 508, 746
BstNI	CCWGG	1 cut(s)	68
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	660
BstV1I	GCAGC	3 cut(s)	238, 749, 761
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	2 cut(s)	906, 923
BstYI	RGATCY	2 cut(s)	906, 923
BsuRI	GGCC	2 cut(s)	174, 393
BtgI	CCRYGG	3 cut(s)	351, 594, 775
BtsCI	GGATG	2 cut(s)	266, 337
Cac8I	GCNNGC	1 cut(s)	64
CfoI	GCGC	2 cut(s)	44, 795
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	392, 451
CseI	GACGC	1 cut(s)	183
CspAI	ACCGGT	1 cut(s)	299
CviAII	CATG	7 cut(s)	179, 352, 455, 595, 671, 743, 776
DdeI	CTNAG	2 cut(s)	78, 789
DpnI	GATC	4 cut(s)	585, 851, 908, 925
DpnII	GATC	4 cut(s)	583, 849, 906, 923
Eco130I	CCWWGG	5 cut(s)	208, 351, 594, 753, 775
Eco47I	GGWCC	1 cut(s)	451
Eco47III	AGCGCT	1 cut(s)	794
Eco57I	CTGAAG	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	66
EcoT14I	CCWWGG	5 cut(s)	208, 351, 594, 753, 775
ErhI	CCWWGG	5 cut(s)	208, 351, 594, 753, 775
FaeI	CATG	7 cut(s)	182, 355, 458, 598, 674, 746, 779
FaqI	GGGAC	2 cut(s)	464, 843
FatI	CATG	7 cut(s)	178, 351, 454, 594, 670, 742, 775
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	3 cut(s)	227, 738, 750
FokI	GGATG	2 cut(s)	253, 344
Fsp4HI	GCNGC	3 cut(s)	227, 738, 750
GlaI	GCGC	2 cut(s)	43, 794
GluI	GCNGC	3 cut(s)	227, 738, 750
GsuI	CTGGAG	2 cut(s)	83, 723
HaeII	RGCGCY	1 cut(s)	796
HaeIII	GGCC	2 cut(s)	174, 393
HapII	CCGG	1 cut(s)	300
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	2 cut(s)	44, 795
Hin1II	CATG	7 cut(s)	182, 355, 458, 598, 674, 746, 779
Hin6I	GCGC	2 cut(s)	42, 793
HinP1I	GCGC	2 cut(s)	42, 793
HinfI	GANTC	4 cut(s)	480, 518, 642, 857
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	2 cut(s)	635, 763
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	5 cut(s)	100, 515, 545, 617, 702
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	4 cut(s)	208, 280, 320, 614
HpyCH4III	ACNGT	2 cut(s)	834, 874
HpyCH4V	TGCA	7 cut(s)	158, 245, 266, 344, 662, 749, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 191, 508, 746
HpyF3I	CTNAG	2 cut(s)	78, 789
Hsp92II	CATG	7 cut(s)	182, 355, 458, 598, 674, 746, 779
HspAI	GCGC	2 cut(s)	42, 793
Kzo9I	GATC	4 cut(s)	583, 849, 906, 923
LmnI	GCTCC	4 cut(s)	209, 507, 554, 802
Lsp1109I	GCAGC	3 cut(s)	238, 749, 761
LweI	GCATC	2 cut(s)	275, 925
MaeIII	GTNAC	2 cut(s)	9, 769
MalI	GATC	4 cut(s)	585, 851, 908, 925
MboI	GATC	4 cut(s)	583, 849, 906, 923
MboII	GAAGA	5 cut(s)	28, 65, 283, 332, 335
MflI	RGATCY	2 cut(s)	906, 923
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	1 cut(s)	561
MnlI	CCTC	8 cut(s)	98, 108, 164, 495, 624, 643, 698, 820
MseI	TTAA	3 cut(s)	491, 713, 911
MslI	CAYNNNNRTG	1 cut(s)	819
MspCI	CTTAAG	1 cut(s)	910
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	68
Mva1269I	GAATGC	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	4 cut(s)	48, 191, 508, 746
NcoI	CCATGG	3 cut(s)	351, 594, 775
NdeII	GATC	4 cut(s)	583, 849, 906, 923
NlaIII	CATG	7 cut(s)	182, 355, 458, 598, 674, 746, 779
NlaIV	GGNNCC	5 cut(s)	304, 452, 503, 709, 925
NmuCI	GTSAC	2 cut(s)	9, 769
NspI	RCATGY	1 cut(s)	182
NspV	TTCGAA	1 cut(s)	640
PciI	ACATGT	1 cut(s)	178
PctI	GAATGC	1 cut(s)	53
PfeI	GAWTC	3 cut(s)	480, 642, 857
PflMI	CCANNNNNTGG	1 cut(s)	111
PinAI	ACCGGT	1 cut(s)	299
PkrI	GCNGC	3 cut(s)	228, 739, 751
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
PscI	ACATGT	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	5 cut(s)	304, 452, 503, 709, 925
PspPI	GGNCC	2 cut(s)	392, 451
PstI	CTGCAG	1 cut(s)	664
PsuI	RGATCY	2 cut(s)	906, 923
RseI	CAYNNNNRTG	1 cut(s)	819
SaqAI	TTAA	3 cut(s)	491, 713, 911
SatI	GCNGC	3 cut(s)	227, 738, 750
Sau3AI	GATC	4 cut(s)	583, 849, 906, 923
Sau96I	GGNCC	2 cut(s)	392, 451
SbfI	CCTGCAGG	1 cut(s)	664
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	1 cut(s)	68
SdaI	CCTGCAGG	1 cut(s)	664
SfaNI	GCATC	2 cut(s)	275, 925
SfcI	CTRYAG	1 cut(s)	660
SfuI	TTCGAA	1 cut(s)	640
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	819
SmlI	CTYRAG	1 cut(s)	910
SmoI	CTYRAG	1 cut(s)	910
Sse8387I	CCTGCAGG	1 cut(s)	664
SspI	AATATT	1 cut(s)	373
StyD4I	CCNGG	1 cut(s)	66
StyI	CCWWGG	5 cut(s)	208, 351, 594, 753, 775
TaaI	ACNGT	2 cut(s)	834, 874
TaqI	TCGA	3 cut(s)	169, 640, 717
TfiI	GAWTC	3 cut(s)	480, 642, 857
Tru1I	TTAA	3 cut(s)	491, 713, 911
Tru9I	TTAA	3 cut(s)	491, 713, 911
TseFI	GTSAC	2 cut(s)	9, 769
TseI	GCWGC	3 cut(s)	226, 737, 749
Tsp45I	GTSAC	2 cut(s)	9, 769
TspDTI	ATGAA	2 cut(s)	136, 659
Van91I	CCANNNNNTGG	1 cut(s)	111
Vha464I	CTTAAG	1 cut(s)	910
VpaK11BI	GGWCC	1 cut(s)	451
XceI	RCATGY	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.