Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011586

Physical Location & Seq

Genomic Coordinates Reverse (-)

72692234 .. 72693006

Gene Structure 773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021181

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGACTAGTGCCAGAAGTCCGAGCAGAGGTGTCAAAATCTGCTGCCTTGTTACTGCTATTTTCTTAGTAATAGCCCTCGTCGTCATGACGATATTGGCACTCACCGTTTTCAAGCCTAAACGACCCGAGATCAATGCCCGACCCGTTGGCCTTGAAAACATTCAATTTACACTCTTTCCGAATGTGACACTAAATGTGACGATAAGCATGCTCGTCACGATAAATAATAGGAATTATGGAAGTTTTAGTTTCAAGAACGCCACGGCATATGTTACTTATCACGACACAGTTGTAGGCTTGGTTCCGATGGAGCATGCCTTTGTCCCTGCACGAGGGAAAATAAACATTACCACCTCTGTGGATCTTATGGGCGACAAGTTGATTTCAAACCCTCATTTCATGGAAGATGTGAATACTGGGATTTTCAATTTGATCTCGACTGCTGATTTACATGGGAAAGTGACTGTGCTCAAGTTCATGAAGTTTGGTGCTACGGCTTTTAGCACATGCGACATCTCATTTTCCGTAAAGAGCGAGCAAATTGATTCCAAGTGCAAATCCAAACTCAAAATGTCAATGCTAATTAATGTCAAAACCTCGAGAGCTTTTTCTTCTGTAGACATGGATGAATTTCACCTTCTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

216

Amino Acids

23.76

Weight (kDa)

9.34

Isoelectric Point (pI)

25.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011586)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43421
malus_domestica	MD17G1094400.v1.1
prunus_persica	Prupe.3G218800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159481 RchiOBHm_Chr2g0159781
rosa_laevigata	RLG00000021181
rosa_multiflora	Rmu_sc0002508.1_g000005 Rmu_sc0007710.1_g000001 Rmu_sc0016393.1_g000004
rosa_roxburghii	Rroxscaffold_2G00090240 Rroxscaffold_2G00090490
rosa_rugosa	Rorug02G0476000
rosa_samantha	Rh2AG543200 Rh2BG555900 Rh2BG558300 Rh2CG526200 Rh2CG528300 Rh2DG565300
rosa_wichuraiana	Rw2G044930 Rw2G045080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	618
AclWI	GGATC	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	629
AfiI	CCNNNNNNNGG	2 cut(s)	26, 332
AgsI	TTSAA	6 cut(s)	112, 155, 164, 253, 387, 427
AhlI	ACTAGT	1 cut(s)	5
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	1 cut(s)	605
AluI	AGCT	1 cut(s)	605
Alw21I	GWGCWC	1 cut(s)	471
AlwI	GGATC	1 cut(s)	369
Ama87I	CYCGRG	2 cut(s)	125, 598
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	42
ApoI	RAATTY	1 cut(s)	629
AseI	ATTAAT	1 cut(s)	585
Asp700I	GAANNNNTTC	1 cut(s)	159
AsuHPI	GGTGA	2 cut(s)	94, 626
AvaI	CYCGRG	2 cut(s)	125, 598
BauI	CACGAG	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	301
BceAI	ACGGC	2 cut(s)	279, 510
BcgI	CGANNNNNNTGC	4 cut(s)	116, 150, 190, 224
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	615
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
BmeT110I	CYCGRG	2 cut(s)	125, 598
BmiI	GGNNCC	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	426
BmuI	ACTGGG	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	455
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 332
Bse1I	ACTGG	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	2 cut(s)	26, 332
BseNI	ACTGG	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	29
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	471
BsiHKCI	CYCGRG	2 cut(s)	125, 598
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	26, 332
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	150
BsoBI	CYCGRG	2 cut(s)	125, 598
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp143I	GATC	3 cut(s)	129, 361, 432
BspANI	GGCC	1 cut(s)	150
BspHI	TCATGA	2 cut(s)	84, 477
BspLI	GGNNCC	1 cut(s)	303
BspPI	GGATC	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	3 cut(s)	129, 361, 432
BssSI	CACGAG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	330
Bst4CI	ACNGT	3 cut(s)	106, 289, 466
BstC8I	GCNNGC	3 cut(s)	209, 315, 536
BstDEI	CTNAG	1 cut(s)	64
BstDSI	CCRYGG	1 cut(s)	261
BstENI	CCTNNNNNAGG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	631
BstKTI	GATC	3 cut(s)	132, 364, 435
BstMBI	GATC	3 cut(s)	129, 361, 432
BstNSI	RCATGY	3 cut(s)	211, 317, 510
BstSFI	CTRYAG	1 cut(s)	615
BstV1I	GCAGC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	361
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	631
Cac8I	GCNNGC	3 cut(s)	209, 315, 536
CciI	TCATGA	2 cut(s)	84, 477
CviAII	CATG	8 cut(s)	85, 208, 314, 400, 452, 478, 507, 622
CviJI	RGCY	6 cut(s)	74, 115, 150, 297, 497, 605
CviKI_1	RGCY	6 cut(s)	74, 115, 150, 297, 497, 605
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	3 cut(s)	131, 363, 434
DpnII	GATC	3 cut(s)	129, 361, 432
Eco88I	CYCGRG	2 cut(s)	125, 598
EcoNI	CCTNNNNNAGG	1 cut(s)	330
FaeI	CATG	8 cut(s)	88, 211, 317, 403, 455, 481, 510, 625
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	8 cut(s)	84, 207, 313, 399, 451, 477, 506, 621
FauNDI	CATATG	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	618
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	1 cut(s)	638
Fsp4HI	GCNGC	1 cut(s)	43
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	150
Hin1II	CATG	8 cut(s)	88, 211, 317, 403, 455, 481, 510, 625
HinfI	GANTC	1 cut(s)	545
HphI	GGTGA	2 cut(s)	94, 626
Hpy166II	GTNNAC	1 cut(s)	619
Hpy188I	TCNGA	3 cut(s)	21, 180, 306
Hpy188III	TCNNGA	7 cut(s)	85, 217, 253, 281, 436, 478, 600
Hpy8I	GTNNAC	1 cut(s)	619
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	1 cut(s)	647
HpyCH4III	ACNGT	3 cut(s)	106, 289, 466
HpyCH4V	TGCA	2 cut(s)	329, 555
HpyF3I	CTNAG	1 cut(s)	64
Hsp92II	CATG	8 cut(s)	88, 211, 317, 403, 455, 481, 510, 625
Kzo9I	GATC	3 cut(s)	129, 361, 432
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	3 cut(s)	25, 339, 402
Lsp1109I	GCAGC	1 cut(s)	29
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	6 cut(s)	49, 184, 196, 214, 271, 460
MalI	GATC	3 cut(s)	131, 363, 434
MboI	GATC	3 cut(s)	129, 361, 432
MboII	GAAGA	3 cut(s)	416, 603, 632
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	6 cut(s)	164, 232, 427, 540, 582, 629
MnlI	CCTC	6 cut(s)	20, 86, 326, 364, 402, 607
MroXI	GAANNNNTTC	1 cut(s)	159
MseI	TTAA	1 cut(s)	585
MslI	CAYNNNNRTG	1 cut(s)	356
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	3 cut(s)	129, 361, 432
NlaIII	CATG	8 cut(s)	88, 211, 317, 403, 455, 481, 510, 625
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	4 cut(s)	184, 196, 214, 460
NspI	RCATGY	3 cut(s)	211, 317, 510
OliI	CACNNNNGTG	1 cut(s)	356
PaeI	GCATGC	2 cut(s)	211, 317
PaeR7I	CTCGAG	1 cut(s)	598
PagI	TCATGA	2 cut(s)	84, 477
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	545
PkrI	GCNGC	1 cut(s)	44
PshBI	ATTAAT	1 cut(s)	585
PspN4I	GGNNCC	1 cut(s)	303
PsrI	GAACNNNNNNTAC	2 cut(s)	285, 317
PsuI	RGATCY	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	3 cut(s)	129, 361, 432
SduI	GDGCHC	1 cut(s)	471
SetI	ASST	5 cut(s)	31, 356, 599, 607, 639
SfcI	CTRYAG	1 cut(s)	615
Sfr274I	CTCGAG	1 cut(s)	598
SlaI	CTCGAG	1 cut(s)	598
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	2 cut(s)	470, 598
SmoI	CTYRAG	2 cut(s)	470, 598
SpeI	ACTAGT	1 cut(s)	5
SphI	GCATGC	2 cut(s)	211, 317
Sse9I	AATT	6 cut(s)	164, 232, 427, 540, 582, 629
SspMI	CTAG	1 cut(s)	6
TaaI	ACNGT	3 cut(s)	106, 289, 466
TaqI	TCGA	2 cut(s)	437, 599
TasI	AATT	6 cut(s)	164, 232, 427, 540, 582, 629
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TseFI	GTSAC	4 cut(s)	184, 196, 214, 460
TseI	GCWGC	1 cut(s)	42
Tsp45I	GTSAC	4 cut(s)	184, 196, 214, 460
TspDTI	ATGAA	5 cut(s)	388, 466, 494, 632, 642
TspGWI	ACGGA	1 cut(s)	514
VspI	ATTAAT	1 cut(s)	585
XagI	CCTNNNNNAGG	1 cut(s)	330
XapI	RAATTY	1 cut(s)	629
XceI	RCATGY	3 cut(s)	211, 317, 510
XhoI	CTCGAG	1 cut(s)	598
XmiI	GTMKAC	1 cut(s)	618
XmnI	GAANNNNTTC	1 cut(s)	159
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.